Rouard, M. et al. Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana). Genome Biol. Evol. 10, 31293140 (2018).
CAS PubMed PubMed Central Google Scholar
Langhe, E. D., Vrydaghs, L., Maret, P. D., Perrier, X. & Denham, T. Why bananas matter: an introduction to the history of banana domestication. Ethnobot. Res. Appl. 7, 322326 (2008).
Google Scholar
D'Hont, A. et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488, 213217 (2012).
Article CAS PubMed Google Scholar
Wang, Z. et al. Musa balbisiana genome reveals subgenome evolution and functional divergence. Nat. Plants 5, 810821 (2019).
Article CAS PubMed PubMed Central Google Scholar
Davey, M. W. et al. A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids. BMC Genomics 14, 683 (2013).
Article CAS PubMed PubMed Central Google Scholar
de Jesus, O. N. et al. Genetic diversity and population structure of Musa accessions in ex situ conservation. BMC Plant Biol. 13, 41 (2013).
Article PubMed PubMed Central Google Scholar
Martin, G. et al. Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. Plant J. 102, 10081025 (2020).
Article CAS PubMed PubMed Central Google Scholar
Kallow, S. et al. Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives. BMC Plant Biol. 21, 415 (2021).
Article CAS PubMed PubMed Central Google Scholar
Martin, G. et al. Chromosome reciprocal translocations have accompanied subspecies evolution in bananas. Plant J. 104, 16981711 (2020).
Article CAS PubMed PubMed Central Google Scholar
Baurens, F. C. et al. Recombination and large structural variations shape interspecific edible bananas genomes. Mol. Biol. Evol. 36, 97111 (2019).
Article CAS PubMed Google Scholar
Belser, C. et al. Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing. Commun. Biol. 4, 1047 (2021).
Article CAS PubMed PubMed Central Google Scholar
Belser, C. et al. Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps. Nat. Plants 4, 879887 (2018).
Article CAS PubMed Google Scholar
Cenci, A. et al. Unravelling the complex story of intergenomic recombination in ABB allotriploid bananas. Ann. Bot. 127, 720 (2021).
Article CAS PubMed Google Scholar
Martin, G. et al. Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea. Plant J. 113, 802818 (2023).
Article CAS PubMed Google Scholar
Lescot, T. Genetic diversity of banana in figures. FruiTrop 189, 5862 (2008).
Google Scholar
Stokstad, E. Banana fungus puts Latin America on alert. Science 365, 207208 (2019).
Article CAS PubMed Google Scholar
Maxmen, A. CRISPR might be the bananas only hope against a deadly fungus. Nature 574, 15 (2019).
Article CAS PubMed Google Scholar
Busche, M. et al. Genome sequencing of Musa acuminata dwarf Cavendish reveals a duplication of a large segment of chromosome 2. G3 10, 3742 (2020).
Article PubMed Google Scholar
Carreel, F. et al. Ascertaining maternal and paternal lineage within Musa by chloroplast and mitochondrial DNA RFLP analyses. Genome 45, 679692 (2002).
Article CAS PubMed Google Scholar
Christelov, P. et al. Molecular and cytological characterization of the global Musa germplasm collection provides insights into the treasure of banana diversity. Biodivers. Conserv. 26, 801824 (2017).
Article Google Scholar
Wang, X., Yu, R. & Li, J. Using genetic engineering techniques to develop banana cultivars with Fusarium wilt resistance and ideal plant architecture. Front. Plant Sci. 11, 617528 (2020).
Article PubMed Google Scholar
Stokstad, E. GM banana shows promise against deadly fungus strain. Science 358, 979 (2017).
Article CAS PubMed Google Scholar
Dale, J. et al. Transgenic Cavendish bananas with resistance to Fusarium wilt tropical race 4. Nat. Commun. 8, 1496 (2017).
Article PubMed PubMed Central Google Scholar
Tripathi, L., Ntui, V. O. & Tripathi, J. N. CRISPR/Cas9-based genome editing of banana for disease resistance. Curr. Opin. Plant Biol. 56, 118126 (2020).
Article CAS PubMed Google Scholar
Ahmad, F. et al. Genetic mapping of Fusarium wilt resistance in a wild banana Musa acuminata ssp. malaccensis accession. Theor. Appl. Genet. 133, 34093418 (2020).
Article CAS PubMed PubMed Central Google Scholar
L, P. et al. Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening. Nat. Plants 4, 784791 (2018).
Article PubMed Google Scholar
Thomas, B. C., Pedersen, B. & Freeling, M. Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res. 16, 934946 (2006).
Article CAS PubMed PubMed Central Google Scholar
Koren, S. et al. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Res. 27, 722736 (2017).
Article CAS PubMed PubMed Central Google Scholar
Walker, B. J. et al. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS ONE 9, e112963 (2014).
Article PubMed PubMed Central Google Scholar
Nurk, S. et al. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads. Genome Res. 30, 12911305 (2020).
Article CAS PubMed PubMed Central Google Scholar
Koren, S. et al. De novo assembly of haplotype-resolved genomes with trio binning. Nat. Biotechnol. 36, 11741182 (2018).
Article CAS Google Scholar
Rhie, A., Walenz, B. P., Koren, S. & Phillippy, A. M. Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies. Genome Biol. 21, 245 (2020).
Article CAS PubMed PubMed Central Google Scholar
Alonge, M. et al. RaGOO: fast and accurate reference-guided scaffolding of draft genomes. Genome Biol. 20, 224 (2019).
Article PubMed PubMed Central Google Scholar
Schneeberger, K. et al. Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proc. Natl Acad. Sci. USA 108, 1024910254 (2011).
Article CAS PubMed PubMed Central Google Scholar
Zhang, X., Zhang, S., Zhao, Q., Ming, R. & Tang, H. Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data. Nat. Plants 5, 833845 (2019).
Article CAS PubMed Google Scholar
Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289293 (2009).
Article CAS PubMed PubMed Central Google Scholar
Li, H. Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics 34, 30943100 (2018).
Article CAS PubMed PubMed Central Google Scholar
Hu, J., Fan, J., Sun, Z. & Liu, S. NextPolish: a fast and efficient genome polishing tool for long-read assembly. Bioinformatics 36, 22532255 (2020).
Article CAS PubMed Google Scholar
Holt, C. & Yandell, M. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics 12, 491 (2011).
Article PubMed PubMed Central Google Scholar
Stanke, M., Diekhans, M., Baertsch, R. & Haussler, D. Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 24, 637644 (2008).
Article CAS PubMed Google Scholar
Brna, T., Lomsadze, A. & Borodovsky, M. GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins. NAR Genom. Bioinform. 2, lqaa026 (2020).
Article PubMed PubMed Central Google Scholar
Kriventseva, E. V. et al. OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs. Nucleic Acids Res. 47, D807D811 (2019).
Article CAS PubMed Google Scholar
Haas, B. J. et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat. Protoc. 8, 14941512 (2013).
Article CAS PubMed Google Scholar
Simo, F. A. et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31, 32103212 (2015).
Article PubMed Google Scholar
Jones, P. et al. InterProScan 5: genome-scale protein function classification. Bioinformatics 30, 12361240 (2014).
Article CAS PubMed PubMed Central Google Scholar
Kent, W. J. BLATthe BLAST-like alignment tool. Genome Res. 12, 656664 (2002).
CAS PubMed PubMed Central Google Scholar
Xu, Z. & Wang, H. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons. Nucleic Acids Res. 35, W265W268 (2007).
Article PubMed PubMed Central Google Scholar
Flynn, J. M. et al. RepeatModeler2 for automated genomic discovery of transposable element families. Proc. Natl Acad. Sci. USA 117, 94519457 (2020).
Article CAS PubMed PubMed Central Google Scholar
Spannagl, M. et al. PGSB PlantsDB: updates to the database framework for comparative plant genome research. Nucleic Acids Res. 44, D1141D1147 (2016).
Article CAS PubMed Google Scholar
Tarailo-Graovac, M. & Chen, N. Using RepeatMasker to identify repetitive elements in genomic sequences. Curr. Protoc. Bioinformatics Chapter 4, 10.1 10.14 (2009).
Jurka, J. et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110, 462467 (2005).
Read more:
Origin and evolution of the triploid cultivated banana genome - Nature.com
- Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations - Nature.com - April 15th, 2024 [April 15th, 2024]
- Is Left-Handedness Tied to Your Genetics? Possibly, New Study Suggests - Technology Networks - April 15th, 2024 [April 15th, 2024]
- A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global ... - Nature.com - April 15th, 2024 [April 15th, 2024]
- Clemson researchers pave the way for precision medicine with AI - Clemson News - April 15th, 2024 [April 15th, 2024]
- ACMG Foundation for Genetic and Genomic Medicine Elects Four Highly Accomplished Medical Genetics ... - PR Newswire - April 15th, 2024 [April 15th, 2024]
- Katie Gallagher MS '15, CGC Named Director of the Joan H. Marks Graduate Program in Human Genetics at Sarah ... - Sarah Lawrence College - April 15th, 2024 [April 15th, 2024]
- The genomic architecture of inherited DNA variants - Baylor College of Medicine | BCM - April 15th, 2024 [April 15th, 2024]
- Clemson genetics major named Truman Scholar for her work in combatting rare diseases - ABC NEWS 4 - April 15th, 2024 [April 15th, 2024]
- Otago University Discovers Cause of Rare Genetic Condition - Mirage News - April 15th, 2024 [April 15th, 2024]
- Genetic Analysis Guides Conservation of Endangered Bumble Bee - Entomology Today - April 15th, 2024 [April 15th, 2024]
- First insights into the genetic bottleneck characterizing early sheep husbandry in the Neolithic period - EurekAlert - April 15th, 2024 [April 15th, 2024]
- Protein-truncating variants in BSN are associated with severe adult-onset obesity, type 2 diabetes and fatty liver disease - Nature.com - April 7th, 2024 [April 7th, 2024]
- A deep dive into the genetics of alcohol consumption - Medical Xpress - April 7th, 2024 [April 7th, 2024]
- Right-wing authoritarianism appears to have a genetic foundation - PsyPost - April 7th, 2024 [April 7th, 2024]
- UC Irvine-led research team builds first tandem repeat expansions genetic reference maps - UCI News - April 7th, 2024 [April 7th, 2024]
- A Deep Dive Into the Genetics of Alcohol Consumption - University of California San Diego - April 7th, 2024 [April 7th, 2024]
- Untold story of bird evolution revealed through genetics - Earth.com - April 7th, 2024 [April 7th, 2024]
- Genetic Test for Opioid Addiction Risk Should Be Withdrawn, Experts Tell FDA - Medpage Today - April 7th, 2024 [April 7th, 2024]
- Scientists Discover 17 New Genetic Variants Linked to Alzheimer's Disease - SciTechDaily - April 7th, 2024 [April 7th, 2024]
- An hereditary liver disease cured with the help of gene scissors - EurekAlert - April 7th, 2024 [April 7th, 2024]
- World Anthropology Day showcases multifaceted programs | Binghamton News - Binghamton University - April 7th, 2024 [April 7th, 2024]
- Resilience to periodic disturbances and the long-term genetic stability in Acropora coral | Communications Biology - Nature.com - April 7th, 2024 [April 7th, 2024]
- Rare genetic variants found to have a large impact on obesity risk - Drug Target Review - April 7th, 2024 [April 7th, 2024]
- INTERACT COALITION FORMED TO ADVANCE PATIENT ACCESS TO GENETIC TESTING FOR HEREDITARY ... - PR Newswire - April 7th, 2024 [April 7th, 2024]
- Christensen Genetics - AG INFORMATION NETWORK OF THE WEST - AGInfo Ag Information Network - April 7th, 2024 [April 7th, 2024]
- New form of EDS identified by mutation in THBS2 gene - Ehlers-Danlos News - April 7th, 2024 [April 7th, 2024]
- Genetics of estrogen production linked to endometrial cancer risk in postmenopausal women - News-Medical.Net - February 13th, 2024 [February 13th, 2024]
- Cord Blood Registry (CBR) by CooperSurgical and Fulgent Genetics Launch Innovative Genetic Testing - PR Newswire - February 13th, 2024 [February 13th, 2024]
- Gene Variant Linked to Lower Levels of Hormonal Birth Control - The Scientist - February 13th, 2024 [February 13th, 2024]
- CooperSurgical, Fulgent partner on genetic screening panels - Medical Device Network - February 13th, 2024 [February 13th, 2024]
- UM Today | Faculty of Science | The intersection of genetics and advocacy - UM Today - February 13th, 2024 [February 13th, 2024]
- Genome-wide association study identifies human genetic variants associated with fatal outcome from Lassa fever - Nature.com - February 13th, 2024 [February 13th, 2024]
- Secrets of human genetics could optimize medical care - Earth.com - February 13th, 2024 [February 13th, 2024]
- Significance of genetic mutations in toxic tort cases - Rhode Island Lawyers Weekly - February 13th, 2024 [February 13th, 2024]
- Why Should Farmers Invest in New Genetics? A Recent Panel Discussion Offered Some Good Reasons - Seed World - February 13th, 2024 [February 13th, 2024]
- The Role of Genetics and Maternal Factors in Retinopathy of Prematurity: A Comparative Study - Medriva - February 13th, 2024 [February 13th, 2024]
- 'The Idea That Who You Are Is Only Genetics Is the Essence of Evil' - Books - Haaretz - February 13th, 2024 [February 13th, 2024]
- IPK researchers provide genetic explanations for shade-induced biomass allocation in wheat - EurekAlert - February 13th, 2024 [February 13th, 2024]
- River Valley Beef Cattle Conference to explore state of hay availability, cattle genetics and more - Stuttgart Daily Leader - February 13th, 2024 [February 13th, 2024]
- Harnessing human evolution to advance precision medicine - EurekAlert - February 13th, 2024 [February 13th, 2024]
- Twins are a mirror to each other and a window into the mysteries of genetics - WAMU 88.5 - February 13th, 2024 [February 13th, 2024]
- Unveiling the Disparity in Cardiovascular Health: Biological Factors, Dyslipidemia, and Genetics - Medriva - February 13th, 2024 [February 13th, 2024]
- Parental traits offer new clues to predicting neurodevelopmental disorders in children - News-Medical.Net - February 13th, 2024 [February 13th, 2024]
- Cheetahs Are Extremely Inbred: 50 Interesting Genetics Facts You May Have Missed At School - Bored Panda - February 4th, 2024 [February 4th, 2024]
- Five Best: Books on Genetics - WSJ - The Wall Street Journal - February 4th, 2024 [February 4th, 2024]
- 4 new US sites added to global Parkinson's genetics study - Parkinson's News Today - February 4th, 2024 [February 4th, 2024]
- Animal Genetics Market revenue to exceed USD 43.4 Billion by 2036, says Research Nester - Yahoo Finance - February 4th, 2024 [February 4th, 2024]
- Nobel Laureate and World-Renowned Geneticist to Speak at 2024 Commencement - News Center - Feinberg News Center - February 4th, 2024 [February 4th, 2024]
- Efforts are underway to improve genetics in cattle herds to better sustainability - RFD-TV - February 4th, 2024 [February 4th, 2024]
- First report on the molecular phylogenetics and population genetics of Aedes aegypti in Iran - Parasites & Vectors - Parasites & Vectors - February 4th, 2024 [February 4th, 2024]
- What can your DNA say about your risk of opioid addiction? - National Geographic - February 4th, 2024 [February 4th, 2024]
- The Born in Guangzhou Cohort Study enables generational genetic discoveries - Nature.com - February 4th, 2024 [February 4th, 2024]
- Invitae Partners with BridgeBio Pharma to Harness Genetic Insights for the Discovery of Rare Disease Therapeutics - PR Newswire - February 4th, 2024 [February 4th, 2024]
- Rare disorder causing extra fingers and toes identified - EurekAlert - February 4th, 2024 [February 4th, 2024]
- Retinal OCT and Genetics Identify Links Between Ocular and Systemic Health - Photonics.com - February 4th, 2024 [February 4th, 2024]
- Researchers discover mechanism that protects tissue after faulty gene expression - News-Medical.Net - February 4th, 2024 [February 4th, 2024]
- Genetics or lifestyle: What makes the greatest difference in health? - Agweek - February 4th, 2024 [February 4th, 2024]
- Why Some Folks Get COVID, and Others Never Do - HealthDay - February 4th, 2024 [February 4th, 2024]
- From plant genetics to fresh produce to be showcased in Berlin - FreshPlaza.com - February 4th, 2024 [February 4th, 2024]
- Adolescent Stress Alters Brain Genes, Affecting Adult Behavior - Neuroscience News - February 4th, 2024 [February 4th, 2024]
- Significance of genetic mutations in toxic tort cases - Massachusetts Lawyers Weekly - February 4th, 2024 [February 4th, 2024]
- New genetic test in England aims to make blood transfusions safer - Sickle Cell Disease News - February 4th, 2024 [February 4th, 2024]
- Unlocking tree genetic diversity: advanced hyperspectral phenotyping for enhanced Scots pine selection - EurekAlert - January 19th, 2024 [January 19th, 2024]
- The Role of Genetics in Cancer Care Continues to Expand - OncLive - January 19th, 2024 [January 19th, 2024]
- Family faces multiple diagnoses for genetic condition NF1 - Sanford Health News - January 19th, 2024 [January 19th, 2024]
- Unique gene variants tied to glaucoma found in Black patients - Livescience.com - January 19th, 2024 [January 19th, 2024]
- Myriad Genetics to Acquire Precise Tumor, Precise Liquid and Laboratory from Intermountain Precision Genomics - GlobeNewswire - January 19th, 2024 [January 19th, 2024]
- Reflections on the Idea of Social and Behavioral Genetics - The Hastings Center - January 19th, 2024 [January 19th, 2024]
- Building trust and saving lives: A community approach to genetic education - Medical University of South Carolina - January 19th, 2024 [January 19th, 2024]
- SOPHiA GENETICS and Karkinos Healthcare Forge Strategic Partnership to Advance Cancer Research in India India ... - PR Newswire - January 19th, 2024 [January 19th, 2024]
- 2024 Brevant Brand Corn Class Offers New Genetics and Traits - CropLife - January 19th, 2024 [January 19th, 2024]
- Genetics Reveal Poor Oral Health in Mesolithic Era - Mirage News - January 19th, 2024 [January 19th, 2024]
- Nova Siri Genetics strengthens its presence in Huelva, growing by 34% - FreshPlaza.com - January 19th, 2024 [January 19th, 2024]
- Controversial New Research Find That Bisexuals Are a Bunch of Rascals - Futurism - January 8th, 2024 [January 8th, 2024]
- Mayo Clinic Q&A: Weight loss and genetics - Chicago Tribune - January 8th, 2024 [January 8th, 2024]
- Nutrigene Launches Personalised Development Program to Intersect Genetics and Learning through DNA - JCN Newswire - January 8th, 2024 [January 8th, 2024]
- The DNA of privacy and the privacy of DNA - Federal Trade Commission News - January 8th, 2024 [January 8th, 2024]
- Development of a human genetics-guided priority score for 19365 genes and 399 drug indications - Nature.com - January 8th, 2024 [January 8th, 2024]
- Myriad Genetics, Inc.'s (NASDAQ:MYGN) Intrinsic Value Is Potentially 221% Above Its Share Price - Yahoo Finance - January 8th, 2024 [January 8th, 2024]
- Educational attainment of East Asians are linked to genetics - KBR - January 8th, 2024 [January 8th, 2024]