Gene expression altered by direction of forces acting on cell | Illinois – University of Illinois News

CHAMPAIGN, Ill. Tissues and cells in the human body are subjected to a constant push and pull strained by other cells, blood pressure and fluid flow, to name a few. The type and direction of the force on a cell alters gene expression by stretching different regions of DNA, researchers at University of Illinois, Urbana-Champaign and collaborators in China found in a new study.

The findings could provide insights into physiology and diseases such as fibrosis, cardiovascular disease and malignant cancer, the researchers said.

Force is everywhere in the human body, and both external and internal forces can influence your body far more than you may have thought, said study leader Ning Wang, a professor of mechanical science and engineering at Illinois. These strains profoundly influence cellular behaviors and physiological functions, which are initiated at the level of gene expression.

The effects of physical forces and signals on cells, tissues and organs have been less studied than those of chemical signals and responses, yet physical forces play an important role in how cells function and respond to their environment, Wang said.

Most studies seeking to understand the mechanics of cells apply force using a microscope cantilever probe to tap a cells surface or a focused laser beam to move a tiny particle across the surface. However, these techniques can only move in one dimension. This incomplete picture leaves fundamental questions unanswered, Wang said for example, the difference in the responses to shear stress from blood flow and stretching from blood pressure.

Wang and his collaborators developed a method that allows them to move a magnetic bead in any direction, giving them a picture of the ways forces act on a cell in 3D. They call it three-dimensional magnetic twisting cytometry.

They found that the force from the magnetic bead caused a rapid increase in expression for certain genes, but the amount of the increase depended on the direction the bead moved. When the bead rolled along the long axis of the cell, the increase was the lowest, but when the force was applied perpendicularly across the short axis of the cell gene activity increased the most. When the bead was moved at a 45-degree angle or rotated in the same plane as the cell to induce shear stress, the response was intermediate.

These observations show that gene upregulation and activation are very sensitive to the mode of the applied force, when the magnitude of the force remains unchanged, Wang said.

In further experiments, the researchers found that the reason for the difference lies in the method that the forces are relayed to the cells nucleus, where DNA is housed. Cells have a network of support structures called the cytoskeleton, and the main force-bearing elements are long fibers of the protein actin. When they bend due to a force, they relay that force to the nucleus and stretch the chromosomes.

These actin fibers run lengthwise along the cell. So when the force strains them widthwise, they deform more, stretching the chromosomes more and causing greater gene activity, the researchers found. They published their findings in the journal Nature Communications.

A stress fiber is like a tense violin string. When a stress is applied across the short axis of the cell, its just like when a person plucks a violin string vertically from the strings direction to produce a louder, more forceful sound, Wang said.

The researchers next step will be to create disease models to see how different forces might help explain the mechanism of certain diseases, and to identify possible therapeutic targets or applications.

In certain diseases, such as aortic valve calcification, arterial atherosclerosis, liver fibrosis or malignant tumors, these cellular responses and adaptation go awry, causing the tissues and organs to function abnormally, Wang said. This is the first time that the mechanism of living cells different biological responses to the direction of forces at the level of genes has been revealed, so perhaps with our three-dimensional approach we can understand these diseases better.

The U.S. National Institutes of Health and the National Science Foundation of China supported this work. Wang is affiliated with the Beckman Institute for Advanced Science and Technology, the Cancer Center at Illinois, the Carle Illinois College of Medicine, the Carl R. Woese Institute for Genomic Biology, the department of bioengineering and the Holonyak Micro and Nanotechnology Lab at Illinois.

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McMurry University announces annual alumni recognition awards – Abilene Reporter-News

McMurry University, in a news release, announced the selections made by theAlumni Association Board of Directors for the school's annual awards recognizing past graduates.

Dr. Paul E. Stubbs, who recently retired after50 years of owning and operating family dental practices in Austin and Georgetown, will receive the Distinguished Alumni Award.

Stubbs receiveda bachelor of arts degree in biology from McMurry in 1961. He also holds a master of science degree in physiology fromWayne State University College of Medicine and a doctor of dental surgery degree fromBaylor College of Dentistry.

In addition to serving on theon the faculty of McMurry College Biology Department, Stubbs, has served as presidentof both the Austin District Dental Society and Texas Dental Association board of directors. He also served the American Dental Association as chairman of theCouncil on Access, Prevention and Interprofessional Relations.

Stubbs was appointed by the governor to serve on the State Board of Dental Examiners, and was president of theWestern Regional Examining Board in 2008, and was the WREBChief Examiner for dental and dental hygiene board examinations until 2016. He received theGold Medal Service Award from the Texas Dental Association in 2013.

Stubbs, who is also a fellow in theAmerican College of Dentists and the International College of Dentists, served as ICD president in 2013, and was named a Master Fellow in 2018.

The board also namedShaun Martin, a 1999 graduate, as named the recipient of this year'sYoung Alumni Achievement Award.

Martin holds a bachelor of arts degree in communication and psychology (summa cum laude) from McMurry, and also received a master of science degree from Texas Tech University in Lubbock.

After 10 years working for Hendrick Health System, Martin served as executive director ofJunior Achievement of Abilene for three years before, in 2014,joining Atmos Energy as manager of public affairs.

Martin is servingas civic leader toGen. Maryanne Miller in the Air Force's Air Mobility Command and vice chairman of the Abilene Chamber of Commerce Military Affairs Committee. He is also on a variety of community boards, including those of the Abilene Industrial Foundation, Taylor County Expo Center and Civic Abilene.

TheAlumni Association also named five recipients of this year's Outstanding Alumni Awards. They are:Rochelle McSherry Johnson, 1986; Don Taylor, 1956;Sarah Sheppard Shaver, 2002;Tyler McCracken, 2008; andSara von Ende Orr, 1993.

The awards will be presented Oct. 17 in a closed ceremony, which will be livestreamed for theMcMurry Alumni Association.

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Celebrity Chef Carla Hall and University Chancellor Dr. Robert Jones Elected to National 4-H Council Board of Trustees – PRNewswire

CHEVY CHASE, Md., Sept. 29, 2020 /PRNewswire/ --National 4-H Council has announced the election of two new Trustees to its Board, Carla Hall and Dr. Robert Jones. Both Trustees and 4-H alums share a deep passion for diversity in agriculture and food equity, and will further support the organization's diversity, equity and inclusion efforts.

Celebrity Chef, Cookbook Author and Tennessee 4-H alumna Carla Hall, who can currently be seen hosting Food Network's Halloween Baking Championship, was introduced to television audiences as a competitor on Bravo's "Top Chef" and "Top Chef: All Stars." She co-hosted ABC's Emmy award-winning lifestyle series, The Chew for over seven years and currently serves as a Culinary Contributor on "Good Morning America." She has an ongoing partnership with Food Network and will host additional series and specials with them this year and beyond. In addition to her television appearances, Hall hosts a podcast on the Wondery Platform called "Say Yes with Carla Hall." Hall's latest cookbook, "Carla Hall's Soul Food: Everyday and Celebration," was published in 2018, landing on annual "Best Cookbook" lists across the country and receiving an NAACP Image Awards nomination. Hall's passion for diversity in food culture, agriculture and equity in food access is rooted in her philosophy that food connects us all.

"As a chef, I have an opportunity to share my passion for food and mindful cooking with the world," says Carla Hall. "I'm excited to continue my work with 4-H in this new role and join their efforts to empower all young people as they navigate the effects of the ongoing pandemic, digital divide and widening opportunity gap," added Hall. "By providing youth and their communities across the country with access to hands-on learning experiences in food, nutrition and wellness, they'll all have an opportunity to develop healthy living skills for a lifetime, no matter their circumstances."

A Georgia native and 4-H alumnus, Dr. Robert Jones earned a bachelor's degree in agronomy from Fort Valley State College, a master's degree in crop physiology from the University of Georgia, and a doctorate in crop physiology from the University of Missouri, Columbia. He began his academic career as a faculty member at the University of Minnesota in 1978, where he spent 34 years before becoming the President of the University at Albany, one of SUNY system's leading research universities. Dr. Jones now serves as the first African-American Chancellor of the University of Illinois at Urbana-Champaign.

"It is no exaggeration to say that the first step in my career was joining my local 4-H club. Those meetings were the first organized events in my life outside of church or school and they set me on a course that changed the trajectory of my life," said Jones. "I found educational opportunities that opened up a world that I never knew existed. I believe that mission is even more vital and more critical today when limited access to childhood educational opportunities leads to unacceptable upper limits on a life and career. 4-H taught me to dream big. And it is my privilege to be able to pay that gift forward today," added Jones.

As Trustees, both Hall and Dr. Jones will support National 4-H Council's strategic priorities, which include growing investment and participation in Cooperative Extension's 4-H program from six million to 10 million youth by 2025 as well as a collaboration with Historically Black Colleges and Universities (HBCUs). Given her focus on nutrition, Hall also plans to promote wellness, youth voice and hands-on skills development amongst young people.

"As passionate advocates for young people, agriculture and promoting diversity, equity and inclusion, both Dr. Jones and Ms. Hall will move us even closer to our goal of providing all children with the opportunities they deserve so they can reach their full potential," says Jennifer Sirangelo, president and CEO of National 4-H Council. "Our new Trustees' expertise will help us to drive National 4-H Council's new campaign, Opportunity4All, which aims to rally support for Cooperative Extension's 4-H program and eliminate the opportunity gap that affects 55 million kids across America," added Sirangelo.

Carla Hall: Chef and Author Washington, D.C.Hall first won over audiences when she competed on Bravo's Top Chef and Top Chef: All Stars, where she shared her philosophy to always cook with love. She spent seven years co-hosting ABC's Emmy award winning, popular lifestyle series The Chew, and she currently appears as a Culinary Contributor on Good Morning America. In addition to her television appearances, Hall hosts a podcast on the Wondery Platform, Say Yes with Carla Hall. Her latest cookbook, Carla Hall's Soul Food: Everyday and Celebration, landed on annual 'Best Cookbook' lists across the country and received an NAACP Image Awards nomination.

Born in Nashville, TN, Hall graduated from Howard University's Business School and worked as an accountant for two years, before deciding to switch gears to work as a runway model. It was during that time, as she traveled through Europe, that she realized her deep-rooted passion for food could be her career path. Hall is very active with a number of charities and not-for-profit organizations that reflect her passion for causes close to her heart, in particular advocating for the physical and mental well being of children.

Dr. Robert Jones: Chancellor, University of Illinois at Urbana-ChampaignIllinoisDr. Jones became Chancellor of the University of Illinois at Urbana-Champaign in 2016, having previously served as President of the University at Albany, State University of New York (SUNY). A Georgia native who studied agronomy and crop physiology, Dr. Jones is an experienced and accomplished scientist and researcher, a member of the American Academy of Arts and Sciences, and a fellow of the American Society of Agronomy and the Crop Science Society of America.

During his distinguished, 34-year career at the University of Minnesota, amongst other duties, Dr. Jones had administrative and budgetary responsibilities for the offices for public engagement, equity and diversity, and played a leadership role in establishing the nation's first urban research and outreach/engagement center (UROC), which was designed to help find a solution to complex challenges in economically depressed urban communities. The center was named in Dr. Jones' honor in 2015.

About 4H4H, the nation's largest youth development organization, grows confident young people who are empowered for life today and prepared for career tomorrow. 4H programs empower nearly six million young people across the U.S. through experiences that develop critical life skills. 4H is the youth development program of our nation's Cooperative Extension System and USDA and serves every county and parish in the U.S. through a network of 110 public universities and more than 3000 local Extension offices. Globally, 4H collaborates with independent programs to empower one million youth in 50 countries. The research-backed 4H experience grows young people who are four times more likely to contribute to their communities; two times more likely to make healthier choices; two times more likely to be civically active; and two times more likely to participate in STEM programs.

Learn more about 4H at http://www.4H.org, find us on Facebook at http://www.facebook.com/4H and on Twitter at https://twitter.com/4H.

SOURCE National 4-H Council

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Keio University Research: Combating COVID-19: Nationwide genomic analysis to study possible reasons for the low COVID-19 mortality rate in Japan -…

https://research-highlights.keio.ac.jp/

On 21 May, 2020, the Joint Research Coronavirus Task Force was launched in Japan to promote the development of a mucosal vaccine for COVID-19 based on advanced genomic analysis.

"We will analyze 600 blood samples taken from Japanese COVID-19 patients located in approximately 100 hospitals throughout Japan," explains Takanori Kanai of the Keio University School of Medicine, who leads the task force. "One of the goals of the research is to try to understand why the mortality rate due to COVID-19 has remained significantly lower in Japan than the United States and European countries. We think it may be related to genetic differences. We want to resolve this issue and share our results with our colleagues around the world."

Background and goals

This research is being undertaken by experts affiliated with Keio University, Tokyo Medical and Dental University, Osaka University, the Institute of Medical Science at the University of Tokyo, the National Center for Global Health and Medicine, the Tokyo Institute of Technology, Kitasato University, and Kyoto University.

"Our research team includes specialists in infectious diseases as well as other fields such as molecular genetics, computational science, and gastroenterology, which is my area of expertise, and is not directly related to epidemiology or infectious diseases," says Kanai. "This project was conceived by a small group of medical doctors and researchers without experience of handling infectious diseases. But the actual project is interdisciplinary, with members including ICU and medical care staff at university hospitals, community healthcare practitioners, immunologists, and even members of the general public. Ultimately, we want to contribute to society through medicine and science."

Working hypotheses for possible reasons for fewer COVID-19 deaths in Japan and Asia

The members of the task force compiled the following list of potential reasons for the low mortality rate in Japan: Japan's world-class medical system; a history of regular face mask use and attention to hygiene (including hand washing) in daily life; a culture of avoiding physical contact akin to social distancing; low expression of virus receptors; BCG vaccination; and differences in immune response due to differences in racial HLA and other polymorphisms.

Gathering samples and genetic information

The task force's goals are to establish a medical response system to predict who is at risk of contracting severe COVID-19 and develop a vaccine using proprietary technology. Genomic analysis technology is being employed to elucidate the genetic basis of the mechanisms that trigger COVID-19 infections to worsen, and thereby develop methods to fight the disease and develop a mucosal vaccine.

The team is focusing on the fact that the number of COVID-19 deaths per capita is far smaller in the Japanese population than it is in Western countries. The 600 blood samples are being studied by methods including high-resolution HLA analysis, SNP array and whole-genome sequence analysis, and T-cell repertoire analysis.

"Our analysis is being used to compare severe cases with mild and asymptomatic cases to identify genes that may be responsible for the exacerbation of COVID-19 in Japanese patients," explains Kanai. "Regarding vaccine development, predicting the target epitope is a major challenge. We are planning to use supercomputer simulations to identify potential antigens for SARS-CoV-2 based on our results for determining the genes that lead to severe cases of COVID-19 in Japanese patients."

Initial findings will be announced in September 2020

The task force plans to announce the initial findings of their research in September 2020. This will include the identities of the genes associated with triggering severe cases of COVID-19 among Japanese people that could be used to predict potential severity during early diagnostics.

"We want to use our results to produce guidelines to mitigate the dangers of overloading the medical care system during potential second or possibly third waves of COVID-19," says Kanai. "Furthermore, our immunological genetic information will be valuable for designing potential vaccines for SARS-CoV-2 for many Japanese people. We will share our results with colleagues in other countries so that they can use them to develop strategies to combat COVID-19 for their own populations."

About the researcher

Takanori Kanai Professor

Department of Gastroenterology and Hepatology, School of Medicine

Takanori Kanai graduated from the Keio University School of Medicine in 1988. Between 1989 and 2003 he held teaching positions at the Keio University School of Medicine, Keio Cancer Center, and Tokyo Medical and Dental University (TMDU). He has also held distinguished positions including as a committee member of the Harvard Medical Institute Educational Program at TMDU; Section Editor of the journal Inflammatory Bowel Diseases; Associate Editor of Journal of Gastroenterology; Editorial Board Member, American Journal of Physiology and Gastrointestinal and Liver Physiology; and Clinical Professor of Medicine (Visiting), TMDU. At the Keio University School of Medicine, he was appointed as an associate professor in 2007 and a professor in 2013, and he has been serving as a vice dean since 2017.

Links

COVID-19 taskforce https://www.covid19-taskforce.jp/en/home/

Takanori Kanai informationhttps://k-ris.keio.ac.jp/html/100002919_en.html

Further informationKeio UniversityOffice of Research Development and Sponsored Projects2-15-45 Mita, Minato-ku, Tokyo 108-8345 JapanE-mail: [emailprotected]

WebsitesKeio Universityhttps://www.keio.ac.jp/en/

Keio Research Highlightshttps://research-highlights.keio.ac.jp/

About Keio University

Keio University is a private, comprehensive university with six major campuses in the Greater Tokyo area along with a number of affiliated academic institutions. Keio prides itself on educational and research excellence in a wide range of fields and its state-of-the-art university hospital.

Keio was founded in 1858, and it is Japan's first modern institution of higher learning. Over the last century and a half, it has evolved into and continues to maintain its status as a leading university in Japan through its ongoing commitment to producing leaders of the future. Founder Yukichi Fukuzawa, a highly respected educator and one of the most important intellectuals of modern Japan, aspired for Keio to be a pioneer of new discoveries and contribute to society through learning.

SOURCE Keio University

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Neuroscience mindfulness lectures remind us to stay in the moment – The Signpost

WSUs Neuroscience Lecture Series explores mindfulness this fall, its effects on anxiety, addiction and overall health, timed to coincide with a season of numerous challenges of mental and emotional wellbeing.

Dr. Joel Skaria, a psychology and neuroscience professor, kicked off the lecture series on Sept. 16 on Zoom to address the importance of remaining mindful, or mentally and emotionally present, in times of stress or uncertainty. He spoke of his own experiences and how mindfulness practices helped him get through the period shortly after he graduated college before he was an established professional.

I was working through what I wanted to do, Skaria said. Processing these big, existential questions in that time of uncertainty. My thoughts were kind of leading me to catastrophic thoughts about the future and ruminating on past mistakes. Maybe I should have gone to law school or done this or that

Anxious thinking is a slippery slope, caused by mental time travel, or projecting ourselves into an unnerving vision of the future or into an embarrassing past memory. When we practice mindfulness, we have the ability to tell ourselves, regardless of what actions I could have taken or what is going to exist in the future, I have the ability to focus my attention on things that I think are important now, and I want to foster my ability of paying attention to the present moment, Skaria said.

The lecture series and the neuroscience program are supported by the college of health professions, science and social and behavioral science, which all relate to the wide-ranging studies in neuroscience. The program brings many different perspectives and disciplines together at Weber State.

Its one of the only true inter-college programs on campus, said Dr. Aminda OHare, director of the neuroscience program and the organizer of the lecture series. Dr. Jim Hutchins of the health professions department is another of the primary neuroscience faculty, approaching from a health and medicine perspective. Dr. Elizabeth Sandquist from the zoology department approaches with the interest of behavioral neuroscience. She uses zebra fish and stem cell models in order to better understand human neural activity by proxy.

Im what you would call a cognitive and effective neuroscientist, OHare said. My own research looks at mindfulness, meditation, how it can change your relationship to anxiety and attention. I study how our emotions impact our ability to think.

Dr. OHare is in her second year at Weber, after previously teaching at the University of Massachusetts Dartmouth, and took over as director of the program in May. OHare will speak at her own lecture in the series on Oct. 6 at 3 p.m.

If you talk to any of my students, theyll tell you that I start my classes with mindfulness practices, OHare said.

OHare says that almost every college student is, to some degree, effected by anxiety, which can be combatted through mindfulness. None of us are going to have a stress-free life, but the goal is to help people build skills that can make us a bit more resilient, a bit more skillful at coping when life does get stressful, OHare said.

Also featured in the series is Dr. Judson Brewer, author of The Craving Mind: From Cigarettes to Cupcakes to Smartphones, the Mechanisms Underlying How Mindfulness Helps Change Habits and Overcome Addiction, who gave a TED Talk in 2016 on breaking bad habits. Dr. Brewers perspective seems to be an evolutionary one: certain behaviors that enabled our survival in the distant past are hard-wired in our brains and sometimes work against us in the lifestyle of modern humanity.

Through a recurring system of trigger, behavior and reward, Brewer said in the TED Talk, our behaviors are enforced regardless of whether they are healthy. He uses mindfulness practice to help people break out of addictive behavior, substance abuse and eating disorders. Mindfulness is just about being really interested in getting close and personal with whats actually happening in our bodies and minds from moment to moment. Dr. Brewer will present on Oct. 23 at 2 p.m.

To close out the series, Jason Cowell, vice-chair of psychology at the University of Wisconsin-Green Bay, will present in November. Cowell is interested in neural processes of young children, especially related to empathy. He studies morality and how morality develops in children, using neuroscience as a tool to look at how their perception of morality changes over time, OHare said of Cowell.

His lecture will be via Zoom on Nov. 19 at 2 p.m.

With all of these diverse and seemingly unrelated topics covered with neuroscience, it may be hard for someone on the outside to see who the neuroscience program is made for. I think its a great compliment to any field where understanding humans is really valuable, OHare said. It gives a really good backbone to any kind of human professions, be it medicine, social services, education. It is understanding the human condition at the level of mechanics, the actual hardware and software that we have going on.

All students who are interested are welcome to attend the lecture series by registering on the WSU website.

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How undergraduate research labs have made the transition to virtual research – The Vanderbilt Hustler

In compliance with both Vanderbilt and VUMC safety protocol, research labs across campus have been adapting to new guidelines, providing a different environment for undergraduate students working on research.

Truman McDaniel

The Annette and Irwin Eskind Family Biomedical Library and Learning Center supports the education, research and patient care mission of Vanderbilt University and the Vanderbilt University Medical Center, according to its website. (Hustler Multimedia/Truman McDaniel)

Tucker ApgarSeptember 29, 2020

With the transition to online classes and activities, research labs have transitioned to a virtual learning environment in compliance with Vanderbilts Return to Campus policies.

The research ramp-up team, formed with the efforts of staff and faculty across the ten undergraduate and graduate schools, implemented a four-phase policy for resuming research activities on and off campus. Currently, Vanderbilt is in Phase II+ for resuming research activity on campus where researchers can update their on-campus research protocol.

The research policy applies to all research activities, including arts and humanities, social sciences, engineering and natural sciences. Per the research website, in order to get involved with on-campus or off-campus research as an undergraduate, a Principle Investigator (PI) or mentor must fill out a form to receive approval from the appropriate supervisory entity.

Depending on the type of research, some students have been able to continue their work with minimal interference. Kaelon McNeece, a sophomore researching metabolic rate sensors, said that he has continued working on his project from his off-campus apartment. However, he noticed how other students in his research group Syburre were affected because their research was suited to a lab environment.

Most of my work has stayed pretty much the same and I have been given all the supplies I need, McNeence said. But there are other members whose work is an exclusively wet lab, dealing with biological specimens that cannot be taken home and need to be kept in a controlled environment. Some of these students wont be able to access their lab for a while so their work now consists of writing and reading papers.

In the neuroscience department, research is a necessary component of the learning environment curriculum where majors must complete two semesters of independent research. In response to the decrease in research opportunities, Elizabeth Catania, director of undergraduate research and independent studies in neuroscience, said that she has been coordinating with labs to ensure that students can still get the same opportunities.

In Phase II+, theres still not full capacity in the lab, Catania said. And for some labs they cant take in any more people, so that was something we were worried about. But I will say the neuroscience department has been very successful getting students into labs as our research numbers have remained similar to those in the past two years.

For labs like Research on Conflict and Collective Action Lab (ROCCA) , sophomore and lab assistant Chloe Hall stated that undergraduate students have taken advantage of the shift to virtual learning. Drake White, a junior also working in the ROCCA lab, commented on how the lab specifically used previous experience with online research before COVID-19.

This year has definitely been an adjustment, but the majority of ROCCAs research is conducted online through literature readings, accessing data and creating data from online sources, so the transition has been pretty smooth, White said.

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Observation offers a better understanding of how neurons communicate with each other – News-Medical.Net

Reviewed by Emily Henderson, B.Sc.Sep 29 2020

The dialogue between neurons is of critical importance for all nervous system activities, from breathing to sensing, thinking to running. Yet neuronal communication is so fast, and at such a small scale, that it is exceedingly difficult to explain precisely how it occurs.

A preliminary observation in the Neurobiology course at the Marine Biological Laboratory (MBL), enabled by a custom imaging system, has led to a clear understanding of how neurons communicate with each other by modulating the "tone" of their signal, which previously had eluded the field. The report, led by Grant F. Kusick and Shigeki Watanabe of Johns Hopkins University School of Medicine, is published this week in Nature Neuroscience.

In 2016 Watanabe, then on the Neurobiology course faculty, introduced students to the debate over how many synaptic vesicles can fuse in response to one action potential. To probe this controversy, they used a "zap-and-freeze" imaging technology conceived by co-authors M. Wayne Davis, Watanabe and Erik Jorgensen, and built by Leica for testing in the Neurobiology course. They zapped a neuron with electricity to induce an action potential, then quickly froze the neuron and took an image. They saw multiple vesicles fusing at once at many synapses, the first novel finding of this Nature Neuroscience report.

But there was more. Back at Johns Hopkins, Kusick and Watanabe decided to walk through the neurotransmission process with zap-and-freeze, taking images every 3 milliseconds after the action potential. That's when they found an answer to an even larger question - how do neurons change the tone of their neurotransmission signal?

At any given time, only a few synaptic vesicles are in "docked" position, meaning loaded and ready to release neurotransmitter. Immediately after an action potential, the number of docked vesicles decreases by 40 percent, so after 2 to 3 action potentials, the docked vesicles would be depleted.

(That is, their signal or "voice" would become weaker and weaker, as more action potentials are induced.) But they found that, within 14 milliseconds following an action potential, new vesicles are swiftly recruited to the docked pool that can fuse and release neurotransmitter, and this recruitment is transient such that neurotransmission can be strong or weak on a millisecond time scale. This is the first close-up look at neural communication that adds up from a temporal perspective.

What this means is that we have identified a mechanism that neurons use to communicate through intonations. Each docked vesicle is like a word that neurons can use for communication at any given moment. It has been known for decades that neurons can speak more than a few words at a time, and they can also change the tone of these words. The question was how. We've shown that neurons continuously bring in more words, but by simply changing the number of vesicles, they can raise or lower the voice. If you are asking a question, you will raise the intonation at the end of a sentence - neurons do so by changing the number of docked vesicles ready to go."

Shigeki Watanabe, Johns Hopkins University School of Medicine

The "zap and freeze" electron microscopy technology is the 21st-century version of the "freeze slammer" developed by John Heuser, Tom Reese et al., and used at MBL nearly 50 years ago to demonstrate how neurons communicate with each other.

Source:

Journal reference:

Kusick G. F., et al. (2020) Synaptic vesicles transiently dock to refill release sites. Nature Neuroscience. doi.org/10.1038/s41593-020-00716-1.

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Editorial: Human behavior and the need to focus on rail safety – Chicago Daily Herald

When it comes to railroad safety, Illinois apparently has some issues with human behavior. Let safety specialist Steve Laffey of the Illinois Commerce Commission set the stage: "Illinois remains the hub of the national network, so while freight train volume was down by about 10% to 15% nationally and Metra and Amtrak also ran fewer trains, human behavior doesn't change."

That was Laffey speaking to our transportation and projects writer Marni Pyke for Monday's "In Transit" column about troubling safety statistics from the first half of 2020. That data compiled by the Federal Railroad Administration found, among other things, that while rail-crossing crashes declined nearly 20% during the pandemic-reduced travel period between last January and June, they went down just 2.2% in Illinois. That's an insignificant figure when you realize it reflects a difference of just one collision. In 2019, there were 45 rail-crossing crashes between January and June; this year, there were 44.

In the matter of deaths, the results are not much brighter. While crashes did decrease significantly between the lockdown months of March and the end of May, deaths did not. Four rail-crash fatalities occurred during the period in both years, but nonfatal injuries actually increased this year -- one in 2019; five in 2020.

These statistics come as National Rail Safety Week ended Sunday, and as long as we're noting uncomfortable comparisons, let's add one more -- nearby states.

The paltry decline in Illinois' crash rate compares to reductions in Indiana and Wisconsin of 23% and 24%, respectively. The rate went down close to half -- 45% -- in Michigan.

States are not in a competition to see which can perform best on the grimness scale, of course. But our neighbors' experience does highlight an important lesson that must be appreciated by every Illinoisan -- and especially every suburbanite, considering how much trains are a part of our transportation mosaic. Safety starts with each of us as individuals. Rail safety measures may differ from state to state, but with significant expenditures in infrastructure and technology in recent years and increased penalties intended to deter unsafe behaviors, Illinois is by no means indifferent to risk.

So, whatever the state's investment, individuals must make an investment of their own, a personal one, a recognition of the inherent danger posed at every rail line and every crossing. Trains, experts emphasize, are moving faster than it may appear, and it takes a long distance for them to stop -- as much as a mile.

Respect these facts. Protect yourself and your family. Let your conscious human behavior be your best safeguard against needless tragedy on the rails.

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Editorial: Human behavior and the need to focus on rail safety - Chicago Daily Herald

Beyond the bench: A conversation with Tony Zador – Spectrum

Anthony Zador

Professor, Cold Spring Harbor Laboratory

When Tony Zador is thinking about the brain, hes often exercising his body. A professor of neurosciences at Cold Spring Harbor Laboratory in New York, Zador has run five miles a day, seven days a week since he was 18. Thats when the ideas sort of click into place, he says.

His bagel-fueled afternoon jaunts have continued unabated during the coronavirus pandemic, helping to drive forward his research on how the brains disparate parts give rise to the complexity of human behavior and experience. Zadors lab created a brain-mapping technique known as BARseq an update to the earlier MAPseq that can trace connections and gene expression in individual neurons. The tool may help researchers understand how brains are connected differently in autistic people.

Spectrum spoke to Zador about the enigma of the human brain, the aha moments of running and why a ski resort is a good place for a scientific conference.

Spectrum: What question drives your research?

Tony Zador: Ultimately, its: How do you go from three pounds of brain to thought? We know an awful lot about the parts that make up brains the neurons, the synapses, the molecules and in spite of all that, we dont know how to put the pieces together to form a simple, coherent model of how that gives rise to thought and emotions and actions and memories. Its really frustrating, because its like youve got a bunch of Tinkertoys and you know that you have all the right pieces, and you dont know how to put them together quite right.

Theres a great cartoon of a bunch of Scrabble tiles, and the caption is something like, I just bought a book from Ikea. Thats kind of how I feel. We understand so much about the pieces, and yet we dont know how to put them together in quite the right way.

S: Is there a person youd like to work with whom you havent worked with yet?

TZ: Im really lucky that I have super smart people in my lab, but I also collaborate all the time with all sorts of people who later become friends or who were already friends. Just now Im really excited because Im just starting a grant with Ed Boyden. Weve been friends for years and talking about doing something together, and so now it looks like we can maybe do something that brings our technologies together and will allow us to do things that we wouldnt otherwise be able to do.

S: What does your daily routine look like?

TZ: My days arent that different now during COVID-19, except that the meetings, instead of being face to face in my office, are over Zoom. I have kids, so my daily routine used to start with being woken up earlier than I would like, to get my kids off to school, but now I get to sleep in a bit more. Usually I try to put off my meetings so I dont have them first thing, and I answer emails or maybe even think a little, but thats rare. Mostly I dont have time for that.

I occasionally have some time to work on reviewing papers, writing papers, writing grants, all those things. I dont have great study habits, so Im not very efficient, and an awful lot of my time when Im supposed to be doing something in particular is spent procrastinating and not doing it. Sometimes I go down scientific rabbit holes, and in some sense thats inefficient but probably good in the long run, because those are when I get excited about new ideas.

I run pretty much every day. I use that time to relax but also often to think through scientific things. Especially if Im doing something math-related, which is a lot of what I do, thats when those ideas sort of click into place. If Im stuck on something I go for a run, and when I get back I at least have an idea of what I should do next.

S: When and where are you most productive?

TZ: It depends. There are different stages of any project. For me, the creative time is at night Im a night owl. I get so little sleep because I wait until everyone is asleep, including the kids, and then I work until 2 or 3 a.m. Thats when I get most excited about tracking down ideas. Thats not necessarily when Im most productive in terms of writing sentences for a paper or something. That is more like a couple of hours after Ive woken up. But that assumes that Im productive, which Im really not these days.

Different people have different styles. Ive basically come to realize the trick is to embrace what you might think are your weaknesses as your strengths and find collaborators who complement your weaknesses. My strength is that I get excited early on in a project when the project is just being conceived. I love the excitement of doing something new. Once I come remotely close to mastering anything, I kind of start losing interest in it.

S: Do you have a favorite conference?

TZ: Ive actually started a bunch of conferences, so theyre among my favorites. When I was a postdoctoral researcher I started a conference called NIC, which was Neural Information and Coding. It was a small, invitation-only conference that was always at a ski resort. We would have meetings in the morning, then ski throughout the day, and then meet again in the evening. That eventually grew into a much larger conference called Cosyne Computational and Systems Neuroscience which has ballooned up to almost 1,000 people.

The most fun meetings are the smallest meetings. Its exactly the meeting I wish had been around when I was a graduate student or a postdoc.

I just started a new meeting for neuroscience and artificial intelligence, NAISys. It was going to be held at the end of March, and it was postponed until mid-November. It will bring together people interested in what real brains can tell us about how to build better artificial neural networks.

S: What are you reading right now?

TZ: You mean other than countless papers on immunology because of COVID? Im reading several books. One is called Other Minds, by Peter Godfrey-Smith. Its all about how smart octopuses are, and how theyre like this weird alien intelligence. Even though Im a neuroscientist, I knew almost nothing about octopuses. Theyre really smart, and the way their nervous system is organized is really different. Related to that, I just finished a book called, Are We Smart Enough to Know How Smart Animals Are? by Frans de Waal. Its just spectacular.

I was an M.D.-Ph.D., and even though I didnt go on to do a residency, the book all medical students had to read was a novel by a guy named Samuel Shem called The House of God. It captured deep truths about what its like to be a medical intern. Its basically a somewhat fictionalized year in the life of a medical intern at MGH, which stood for Mans Greatest Hospital. Fairly recently, he came out with a sequel called Mans Fourth Best Hospital, and I just started reading that, so Im excited.

S: What do you eat or drink while youre working?

TZ: I drink endless cups of coffee, and because I cant run on a full stomach, and it takes a very long time after eating for me to not have a full stomach, I basically eat bagels until I go for a run. So the answer is coffee and bagels.

Continued here:
Beyond the bench: A conversation with Tony Zador - Spectrum

Studies with monkeys find early attachment brings generations of benefits – ScienceBlog.com

To understand the importance of early-life attachment to mothers and how it affects the likelihood of success across generations, we can learn a lot from monkeys, say scientists.

In a long-term study of rhesus monkeys, Yale researchers have quantified the health and social benefits of secure mother-rearing and attachment. The working paper,published in the National Bureau of Economic Research, suggests that the benefits of early attachment persist for generations.

The study was led by Amanda Dettmer, associate research scientist at Yale, along with economists including Nobel laureate James Heckman from the University of Chicago, and represents a unique collaboration between primatology and economics.

Its really novel to show intergenerational effects, said Dettmer, a primatologist and behavioral neuroscientist. And its a really novel collaboration between two very different fields of study.

For the study, the scientists observed 650 mother-infant pairs. At birth, monkeys were randomly assigned to be reared by their mothers or reared in a nursery. Those monkeys who were nursery reared had human caregivers for the first 40 days and were then either assigned to a cloth surrogate with daily peer playtime, or housed together with four other monkey peers. After eight months, all monkeys were housed and treated identically. This randomization occurred in subsequent generations as well.

According to Dettmer, rhesus monkeys can reveal important insights for understanding human behavior. They share 93% of their DNA with humans, develop attachment at infancy, and have similar social structures to humans. They are very valid models for human conditions, but they develop four times faster, she said. We can get answers much faster than we can from humans.

Unlike in studies of humans, in which children cannot be randomly assigned to particular early life experiences, this experimental paradigm allowed researchers to test causality rather than simply correlation between early social experiences and later health outcomes. And because the researchers had access to data collected over four decades, they were also able to show how these early-life advantages benefited generations of descendants.

Researchers found that in cases where monkeys were reared by their mothers and descended from generations of monkeys reared by their mothers, they were most likely to have healthier outcomes later in life and to require less veterinary care. These monkeys also scored higher on dominance measures achieving a higher social ranking as evidenced through easier access to food and sweets and grooming from preferred partners.

These were the monkeys who got the banana first, Dettmer said.

Nursery-reared monkeys whose mothers were reared by their mothers did not realize the same benefits. That is, researchers found that the benefits of mother-rearing were only positive for the offspring of mothers who themselves were reared by mothers. Parenting, the authors conclude, is the primary channel of intergenerational transmission of early-life advantage.

Dettmer noted that monkeys assigned to nurseries were still given an extremely enriched environment with access to caregivers around the clock as well as daily playtime and stimulating cognitive assessments. But the absence of a mother caregiver had a lasting impact, she said.

Heckman haspreviously shownthat investments in a childs early years via quality early childhood programs yielded benefits across their lifespan.

The current paper looks at how investments in early care and secure attachments provides benefits that persist across generations. The monkeys who were nursery-reared can be equated with children who are unable to develop secure attachments, said Dettmer, such as might be experienced by those in foster care.

Dettmers lab is continuing research, not only into the health and behavioral outcomes of early attachment but also into changes that might be happening at the biological level. We want to see how early experiences influence DNA methylation and how that, too, helps to explain differences, she said.

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Studies with monkeys find early attachment brings generations of benefits - ScienceBlog.com