Category Archives: Immunology

$1.05 Million Grant from Chan Zuckerberg Initiative for Penn Researchers – UPENN Almanac

$1.05 Million Grant from Chan Zuckerberg Initiative for Penn Researchers

Two teams of researchers, one from the Perelman School of Medicine at the University of Pennsylvania, and the other from Penn and Childrens Hospital of Philadelphia (CHOP), were each awarded $525,000 in funding to explore emerging ideas regarding the role of inflammation in disease.

The number of overweight or obese infants and young children, from birth to five years, increased from 32 million globally in 1990 to 41 million in 2016. A similar prevalence is observed in older children and adolescents. The vast majority of overweight or obese children live in developing countries or belong to underprivileged communities.

One team of researchers, led by Jorge Henao-Mejia, an assistant professor of pathology and laboratory medicine, Sarah Henrickson, an assistant professor of pediatrics, and Golnaz Vahedi, an assistant professor of genetics, plans to use the award to investigate the impacts of childhood obesity on immune function. Dr. Henao-Mejia is also affiliated with the department of pathology at CHOP, and Dr. Henrickson is an attending physician of allergy and immunology at CHOP.

This award will allow us to map the impact of obesity in the immune system in children and the long-term immunological consequences of this disorder, Dr. Henao-Mejia said. As inflammation plays a critical role in the majority of obesity associated diseases, our research will be the first step to elucidate alterations in the immune system that contribute to disease progression in obese children.

Another team, led by Kellie Ann Jurado, Presidential Assistant Professor of Microbiology, Monica Mainigi, William Shippen, Jr. Assistant Professor of Human Reproduction, and Donegeun (Dan) Huh, associate professor of bioengineering at the School of Engineering and Applied Science, plans to explore how maternal and fetal cells respond to specific inflammatory signals and analyze the network of placental cells and immune cells that impact pregnancy outcomes in chronic inflammatory diseases.

The grant partners three investigators with diverse expertisean experimental immunobiologist, a reproductive and infertility clinician-scientist, and a bioengineer who specializes in biometric technology to investigate the role of the maternal inflammation on early pregnancy establishment.

We know that communication between the mother and the fetuss immune system is critical in pregnancy, Dr. Mainigi said. Results from this study will provide insight into immunological mechanisms that govern pregnancy, an understanding essential for proper diagnosis, prevention and treatment of infertility and pregnancy complications.

The Chan Zuckerberg Initiative has awarded grants to 29 teams of researchers around the world to study how inflammation influences disease.

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$1.05 Million Grant from Chan Zuckerberg Initiative for Penn Researchers - UPENN Almanac

Every healthcare worker should be tested for COVID-19 every few weeks, expert says – Newstalk 106-108 fm

An immunology expert has called for all healthcare and nursing home workers to be tested for COVID-19 every two to three weeks - saying its a no-brainer to help limit transmission of the virus.

Dr Tomas Ryan, Assistant Professor at the school of biochemistry and immunology at Trinity College Dublin, says international studies have shown that mass testing of health workers is the best investment in testing a country can make.

Latest figures show that7,842 of the confirmed coronavirus cases here are associated with healthcare workers - nearly 30% of the total.

Speaking on The Pat Kenny Show, Dr Ryan said thats an extraordinarily high number.

Every healthcare worker should be tested for COVID-19 every few weeks, expert says

00:00:00 / 00:00:00

He said: There have been some very disturbing studies coming out from the UK showing that between 3% and 5% of all healthcare workers in England have the virus and 50% of those people are totally asymptomatic.

Healthcare workers are spreading the virus in our hospitals theyre spreading it to other healthcare workers, and theyre spreading it to patients. Then patients are leaving hospital and spreading it to other people.

We absolutely need to be testing every healthcare worker - and I would say every nursing home or care worker - every two to three weeks, regardless of whether they have symptoms or whether theyve had contact with someone who has had symptoms.

If you do routine testing of all healthcare workers or people in these high-risk scenarios, you reduce transmission in the overall population by 30% - its a no-brainer: we should just do it, but were not doing it.

Dr Ryan also addressed the high rate of COVID-19 clusters in nursing homes - saying its been one of the tragedies of the pandemic in this country.

He said that Ireland is not unique in Europe in having experienced such problems in nursing homes, but explained that other countries - particularly in Asia - took quick action to deal with the issue, including instructing staff to wear face masks at all times.

He told Pat: What I do think is that the State - NPHET - should have taken consolidated, preempted action in adequately instructing and advising nursing homes.

I think that visitor restrictions should have been put in place in early March in a very clear manner for all nursing homes - I think that would have made a huge amount of difference, as well as staff education and masks.

We should have stopped all visitors to nursing homes on February 29th, when the first case came into Ireland.

Nursing Homes Ireland stopped visits in their private nursing homes in early March - but Dr Ryan suggested that seems to have been contradicted by NPHET shortly after.

Dr Ryan said it was bizarre for health officials to suggest visitors did not bring cases of the virus into nursing homes.

He also observed: Sometimes I think NPHET and indeed the Department of Health underestimate how scientifically-literate a population we currently have in Ireland.

Everybody is very well-informed on the basic biology of COVID-19. We know it spreads pre-symptomatically - weve known that from March.

His comments come as the Dil COVID committee today hears from representatives from the sector about the situation in nursing homes.

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Every healthcare worker should be tested for COVID-19 every few weeks, expert says - Newstalk 106-108 fm

Stony Brook Team to Test Effectiveness of Inhibitor Drugs on COVID-19 – Stony Brook News

The effectiveness of two inhibitor drugs in the treatment of COVID-19 will be tested by a team of researchers in the Department of Microbiology and Immunology at the Renaissance School of Medicine.

Led byNancy Reich, PhD, a Professor in the Department of Microbiology and Immunology and recent President of the International Cytokine and Interferon Society, the research will test the efficacy ofinterferon-lambda and bradykinin inhibitors both FDA-approved drugs for other uses in the treatment and prevention of COVID-19 in laboratory models. The collaborative work will be supported by a $450,000 grant, effective June 1, from the G. Harold and Leila Y. Mathers Foundation.

Safe and effective vaccines take months to years to develop, if even attainable. For this reason, there is an urgent need to identify first-line, broad-spectrum, therapeutic agents that will block viral replication and will alleviate the effects of severe inflammatory responses caused by COVID-19, said Dr. Reich, Principal Investigator.

She and colleagues believe these two drugs have promise in the treatment against COVID-19 because interferon is a natural antiviral hormone known to be the only cytokine that inhibits virus replication, and bradykinin inhibitors are effective in reducing the lung inflammatory responses to viral infection.

The research will take two approaches. One is to test the effectiveness of interferon-lambda to block viral replication. Interferon-lambda protects the epithelial cells that line the lung and digestive system and reduce viral load. The second approach is to block the severe pulmonary edema that occurs with COVID-19. To reduce the leakiness of blood vessels that causes inflammation, they will test inhibitors of bradykinin, a natural and potent mediator of vascular permeability.

In addition to the laboratory investigation, Dr. Reich said that the team will evaluate primary human lung cells and cells from other affected human tissues to define the molecular mechanisms by which COVID-19 takes over the infected cells and suppresses natural defense mechanisms.

The departmental effortinvolves collaborators with expertise in infections and immune defense. These include: Dr. Nancy Reich, Dr. Patrick Hearing and Dr. Erich Mackow, who will investigate molecular aspects of COVID-19; and Dr. Janet Hearing and Dr. Hwan Kim who are certified to work in high containment biosafety laboratories.

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Stony Brook Team to Test Effectiveness of Inhibitor Drugs on COVID-19 - Stony Brook News

Preliminary study on the effects of treatment for breast cancer: immunological markers as they relate to quality of life and neuropsychological…

Participants

IRB approval for this study was obtained from both Indiana Wesleyan University and Lutheran Hospital (Fort Wayne, IN) and informed written consent was obtained from all women prior to study participation. All patients were recently diagnosed with Stage 1 to 3a breast cancer (using the Tumor, Node, Metastasis (TNM) Stage Grouping System) at the Lutheran Hospital Breast Center and Womens Health clinic in Fort Wayne, Indiana (see Table1). They were contacted over a two-month period, and 20 of them (66%) agreed to participate. Following initial surgery (lumpectomy and/or mastectomy) all participating women (active treatment group) in the present study underwent radiation therapy (N=20). Depending on the staging and recommended treatment guidelines, most active treatment women then had chemotherapy (Cyclophosphamide, Methotrexate, Fluorouracil or CMF) or Taxotere (Docetaxel) (Table 1). These were all women in the active treatment group with a positive lymph node biopsy during surgery (N=9) as per the hospital oncology department standard of care for breast cancer at that time. Unfortunately, the molecular subtype of breast cancer (e.g., triple negative, HER2+, HR+) was not available for the active patient or breast cancer survivor (remission) groups in the present study. Though data on molecular subtype of breast cancer is not available, some patients in both groups received tamoxifen (Table 1), suggesting a hormone-dependent (luminal) disease. Those not receiving the drug most likely belonged to HER2-positive or triple-negative subtype.

Women were excluded if their medical chart review revealed significant neuropsychological risk from a history of central nervous system disease or infection (e.g., meningitis, HIV, stroke), seizures, prior cancer diagnoses, or traumatic brain injury or accident.

Through a breast cancer survivors support group meeting monthly at the Lutheran Hospital Breast Center, a comparison group was enrolled. These were all women who had completed treatment for breast cancer at least a year previously (N=26), including chemotherapy (N=18). All present women in the active treatment group given chemotherapy completed the full course of treatment in accordance with the American Cancer Association guidelines for early stage breast cancer, either CMF or Taxotere. The cancer survivor comparison group members were also excluded if a medical history revealed any of the exclusion neuropsychological risk factors as noted above for the active treatment group. Although the breast cancer survivor comparison group could report their treatment history, we did not have access to their original disease stage at diagnosis. The two groups were equivalent on age and education, all were Caucasian and the majority were married, employed, and with at least some college education (Table 1).

Zung Self-Rating Depression Scale [19, 20]. The Zung Self-Rating Depression Scale (Zung SDS) is a self-administered 20-item questionnaire that includes a variety of statements associated with depressed moods and is a helpful tool used to assess depression in individuals. The inventory looks at various symptoms of depression such as insomnia, fatigue, suicidal thoughts, and anxiety. The 20 items are based on a Likert scale and the four possible responses range from None or little of the time to Most or all of the time. The higher the score, the more depressed the respondent.

The State-Trait Anxiety Inventory [21,22,23]. The State-Trait Anxiety Inventory (STAI) is a measure that looks specifically at anxiety. It measures a persons current anxiety (state) and characteristic anxiety (trait). The full STAI is a 40-item self-report anxiety inventory, but a shortened version of the STAI consisting of five items was used in this study [21, 22]. The higher the score, the more anxious the respondent.

Hope Quality of Life Scale Breast Cancer Patient Version [24,25,26,27]. This version of the Quality of Life Scale (Ferrell, Dow, & Grant, 1995) is based on previous versions created by the City of Hope National Medical Center. The assessment is a 46-item questionnaire that looks at the four domains of quality of life: physical well-being, psychological well-being, social well-being, and spiritual well-being. This instrument has been validated and reliability has been insured over multiple uses in hospital studies [26,27,28]. The higher the score, the better the quality of life.

Pittsburgh Sleep Quality Index [29, 30]. A modified version of the Pittsburgh Sleep Quality Index (PSQI) was used to evaluate sleep quality in the patients. The PSQI is broken down into seven parts for scoring. They are subjective sleep quality, sleep latency, sleep duration, habitual sleep efficiency, sleep disturbances, use of medication, and daytime dysfunction. The higher the score on these seven components the more likely the person is to have sleep disturbances. We also included the Sleep Hygiene Likert Scale optional items with this questionnaire.

Functional Assessment of Cancer Therapy - General (FACT-G) [31]. This assessment is a comprehensive compilation of questions which measures health-related quality of life (QOL) in patients with cancer and other chronic illnesses. This study used the FACT-G in conjunction with the subscale for assessing specific problems related to anemia in cancer patients (FACT-An), a subscale which is represented by questions addressing the cardinal symptom of anemia, which is fatigue. This measure also helped gauge the impact of cancer treatment, such as chemotherapy, on other measures of emotional, psychological, and spiritual well-being. For two of the scales (Physical, Functional) higher scores indicate poorer functionality. For the other two scales (Social/Family Well-being, Emotional Well-being), higher scores indicate higher well-being.

Fatigue Symptom Inventory (FSI) and the Multidimensional Fatigue Symptom Inventory (MFSI) [32,33,34]. The MFSI (Hann, et al., 1998) is a 14-item self-report measure designed to measure the daily patterns of fatigue including intensity, frequency, and impact on overall quality of life. The MFSI (Stein, Martin, Hann, & Jacobsen, 1998) is an 83-item self-report measure that evaluates the principal manifestations of fatigue; and includes the subscales of global, somatic, affective, cognitive, and behavioral manifestations of fatigue. These instruments have been validated in a variety of clinical contexts with cancer patients, and provide for a sensitive overview of the impact of the disease on patients overall quality of life as well as activities of daily living (ADL) [32, 34]. Lower scores indicate less intense symptoms of fatigue, so the lower the score the better.

Spiritual Beliefs Inventories (SBI) [35, 36]. In a landmark publication which gained credibility for the inclusion of spiritual well-being assessment within the broader evaluation of quality of life (QOL) issues in psycho-oncology research, Holland and her co-workers (Holland et al., 1998) developed and published the Spiritual Beliefs Inventory. Unlike previous spiritual well-being inventories (e.g., the Spiritual Well-Being Scale in Paloutzian and Ellison, 1991) used in health-related research (e.g., Carson & Green, 1992; Kaczorowski, 1989), the SBI does not rely exclusively on spiritual and religious beliefs, but also includes a social support measure derived from involvement with church or religious groups. The result of their efforts is a well-validated 15-item questionnaire that is a brief, yet robust, measure of the more universal aspects of religious, spiritual, and religious community social support coping with a life-threatening illness as well as the subsequent QOL impact. Also included was the Paloutzian and Ellison 20-item Spiritual Well-Being scale (SWB) that was developed to look at just spiritual and religious beliefs [37]. For both instruments, a higher score indicates a stronger sense of spiritual wellbeing.

Bottomley Social Support Breast Cancer Scale [38,39,40]. This is a cancer-specific questionnaire that is well validated in the clinical cancer-care context and also quick and easy to use in a busy clinical environment. The Bottomley Social Support Scale has good construct validity with the Hospital Anxiety and Depression Scale. It is reliable, allowing medical and support staff to assess the levels of social support and implement any appropriate social support interventions and sensitive to the duress of breast cancer treatment and care [41]. The higher the score, the less the perceived social support on the part of the respondent.

Automated Neuropsychological Assessment Metric (ANAM) [42]. This is a computerized neuropsychological assessment battery developed by researchers at the Walter Reed Medical Center for use in human performance factor studies (e.g., neuropsychological effects of fatigue, chronic stress, sleeplessness, toxic exposure). It takes about 45 to 60min to complete for the average adult. The components of the assessment are derived from well-validated brain/behavior tests such as those encompassed in the Halstead-Reitan Neuropsychological Assessment Battery and the Wechsler Adult scales for both intelligence and memory. The principal measures that we were taken from this assessment pertain to executive functioning and problem solving (Tower of Hanoi Task, Symbolic Logical Reasoning Test), encoding and memory, and a continuous performance task measure of attentional capacity and response time. Furthermore, the ANAM battery has been validated in the hospital or clinic setting [42,43,44]. For all of the ANAM tests, the higher the score the better the performance with the exception of simple reaction time.

Twenty-five ml blood samples were drawn (210ml Na-heparin, 15ml clot) immediately before the computerized questionnaire and ANAM assessment at each of our four study assessment points. Blood was placed in heparinized tubes and was evaluated for hematocrit (percent of red blood cells) and total plasma protein (g/dl). Standard Wrights staining procedure was used to obtain complete blood counts (CBC). The heparinized samples were then separated into the leukocyte and erythrocyte fractions by Histopaque-1077 gradient centrifugation. FITC-conjugated murine monoclonal antibodies were used to label and measure total T cell count (CD3), helper T cell (CD4+), cytotoxic T cell (CD8+), B cell (CD19+), and NK cell (CD16+) using flow cytometry. Each of these assays was conducted at the Indiana Wesleyan University (IWU) research laboratory facility under the direction of Burton Webb. To accomplish this, blood specimens at room temperature were transported from the Lutheran Hospital Fort Wayne study site (about a 1-h drive) within 24h of the blood draw by an IWU student lab assistant trained in the safe handling of biohazard material, employed by Dr. Webb in his lab on a work-study program. Upon receipt at IWU, the blood specimens were immediately processed and placed in deep freeze frozen storage (70C) for later analysis. Dr. Webb, who at the time taught immunology to first-year medical students at Indiana University-Purdue University Indianapolis (IUPUI) Medical School-Muncie, supervised all immunology specimen processing and assay procedures directly in his laboratory at Indiana Wesleyan University, Marion.

Neuman and colleagues documented a relationship between immunological response and mental health [45]. A protocol similar to theirs for assessing the integrity of immunological response as it relates to psychological, emotional, neuropsychological, and spiritual well-being in the breast cancer patients was used. Blood samples were drawn immediately before the ANAM (computerized neuropsychological assessment) battery. Blood placed in heparinized tubes were evaluated for microhematocrit % (percent of red blood cells) using a centrifuge; and plasma protein values (g/dl) using a standard refractometer were determined from these samples. A radioimmunoassay kit was used to measure plasma cortisol (a stress hormone emitted by the adrenal cortex) and Toxicity-preventing activity (TxPA) (a serum albumin factor correlated with cardiovascular risk), along with lipid density measures. Standard staining procedures were used to obtain total white blood cells (WBC) as well as specific types of WBC important in combating disease and infections (mononuclear cells or lymphocytes, neutrophils, and monocytes). Fluorescein-labeled murine monoclonal antibodies were used to label and measure CD3, CD4, CD8, CD19, and CD16/CD56 lymphocytes using fluorescence-activated cell sorting (FACS) scan. NK (natural killer) white blood cells were also measured, since these provide protection against cancer cells and are related to blood vessel constriction following a stressor condition (Neumann & Chi, 1999). These assays were completed at the Indiana University Medical School Muncie Center for Medical Education immunology laboratory.

For the newly diagnosed breast cancer group, the first assessment point was at enrollment, within the first few weeks of diagnosis, usually following lumpectomy surgery and just before radiation treatment. The second assessment point was generally after surgery and during or just after radiation therapy, usually about one to 2 months after initial diagnosis for the active treatment group and enrollment for the remission breast cancer survivor group (Fig.1). The third assessment point was at 2 months after treatment had started (after the conclusion of radiation therapy and in the initial stages of chemotherapy if recommended). The fourth assessment point occurred a month following completion of all chemotherapy if recommended. This was usually at the six- to eight-month point for the active treatment group and about 6 months following enrollment for the remission group. The second, third, and fourth assessments occurred 23days after treatment (radiation and/or chemotherapy).

legend. The approximate timing of the 4 principal assessment domains (Spiritual Well-being, Quality of Life, Computerized Neurocognitive Performance, Immunological Biomarkers) is depicted for both the active treatment and remission (breast cancer survivor) groups in the present study. Timing of the assessments coincided with the approximate course of treatment from diagnosis/enrollment (Assessment 1), initial surgery and radiation treatment (Assessment 2), continuation/completion of radiation and initiation of chemotherapy (if needed) (Assessment 3), and completion of radiation and/or chemotherapy if needed (Assessment 4)

For the breast cancer survivor comparison group, the assessments occurred at enrollment, 1 month, 2 months, and at 6 months. The completed surveys and computerized ANAM neuropsychological assessment were completed in a quiet counseling room at the Womens Cancer Center at Lutheran Hospital. Each blood drawn was completed by a registered nurse immediately following the assessments. Specimens then were processed at Muncie Center for Biomedical Education, where immunological biomarkers were assayed using flow cytometry.

Descriptive statistics at enrollment for active treatment breast cancer group and the breast cancer post-treatment (remission) comparison group not on active treatment, were compared using item averages for all questions (reverse coded where necessary) for each of the questionnaire measures (psychosocial, emotional wellbeing, quality of life, spiritual wellbeing, physical symptoms of cancer treatment). Statistically significant differences between the two groups were compared for these measures at p<0.05 using an independent samples Tukey t test (nonparametric). The ANAM neuropsychological performance measures were computed automatically as age- and gender-based standardized scores using the ANAM norms built into the software package for American adults. Adjusting for age and years of formal education at enrollment (diagnosis), partial correlation coefficients were computed for the emotional wellbeing, quality of life, physical and health symptoms, and spiritual wellbeing measures when correlated with the immunology T cell biomarkers (CD4, CD8, CD16) for the active treatment and for the cancer survivor comparison groups separately. The most significant correlations were visually depicted in a scatterplot in the study figures.

Active treatment women were also compared across principal outcomes based on type of treatment prescribed (chemotherapy and radiation versus radiation only). For the active treatment subgroup comparisons (chemotherapy and radiation versus radiation only), an ANOVA repeated-measures analysis was used to evaluate whether a significant group by time interaction effect was apparent, indicating a greater degree of change over time for one treatment subgroup compared to the other. The most significant questionnaire-based (psychosocial support, quality of life, emotional wellbeing, spirituality, physical symptoms) time by treatment subgroup interaction effects was then depicted in the form of visual plot. The same was done with the most significant time by treatment subgroup interaction effect for the immunology biomarkers (CD4, CD8, CD16). IBM SPSS statistical software version 21 was used for all analyses, graphs, and plots [46].

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Preliminary study on the effects of treatment for breast cancer: immunological markers as they relate to quality of life and neuropsychological...

Deal Watch: Roche And Vividion Will Investigate E3 Ligases In Cancer, Immunology – Scrip

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Deal Watch: Roche And Vividion Will Investigate E3 Ligases In Cancer, Immunology - Scrip

Your chances of COVID-19 recovery could be compromised by ‘scars’ left behind by past lung infections | Daily Sabah – Daily Sabah

Patients recovering from severe lung infections develop "immunological scars" that stifle their body's immune response and heighten their risk of contracting pneumonia, a common killer of COVID-19 sufferers, researchers said Monday.

Studies in both humans and mice showed that the body's immune response is temporarily switched off after some severe infections, rendering patients more vulnerable to new bacterial or viral diseases.

A team of researchers from the University of Melbourne's Peter Doherty Institute for Infection and Immunity and the University Hospital of Nantes found that the cells that form the immune system's first line of defense macrophages were "paralyzed" after severe infections.

Macrophages neutralize bacteria and raise an internal alarm that sends immune cells rushing to the site of infection. Once the threat is taken care of, the macrophages down tools and the body goes back to running as normal. But by analyzing blood samples from patients who had suffered severe infections, researchers found that their macrophages had been deactivated. This left patients at greater risk of contracting potentially fatal secondary infections such as pneumonia while in the hospital.

Turkey sees around 90,000 people infected with pneumonia annually around 22% of those die. This high rate is attributed to the misuse of antibiotics, which creates the perfect ground for pneumococcal bacteria to resist standard drugs. According to the World Health Organization's (WHO) 2019 report, pneumonia is also fourth on the list of biggest killers worldwide.

Researchers also identified the trigger or "switch" for reanimating the macrophages, a receptor known as SIRP-alpha. This was found to restore the macrophages to their "full capacity."

The team said their findings could influence how hospital infections are treated including rethinking the systematic use of antibiotics, to which superbugs are increasingly resistant.

"We believe an alternative approach is to recharge the immune system to take it out of its paralyzed state or to prevent paralysis in the first place so that patients will be able to protect themselves against secondary infections without resorting to antibiotics," said Jose Villadangos from the Peter Doherty Institute.

"Turning off the newly described switch may be such an approach," said Villadangos, lead author of the study published in Nature Immunology.

The research may have significant implications on how COVID-19 cases are treated in the future.

Most COVID-19 deaths occur due to a cytokine storm, a process whereby the body's own immune response runs wild causing acute and often fatal inflammation.

Antoine Roquilly, from the University Hospital of Nantes, said better understanding the SIRP-alpha and other immune switches that temporarily shut down the body's immune response "may prevent the storm from occurring and improve the survival of these patients."

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Your chances of COVID-19 recovery could be compromised by 'scars' left behind by past lung infections | Daily Sabah - Daily Sabah

Interferon therapy may speed recovery from COVID-19 – Reuters

NEW YORK (Reuters Health) - Treatment with the antiviral interferon alfa-2b (IFN-a2b) appears to speed up virus clearance and lower levels of key inflammatory markers in patients with COVID-19, according to an exploratory study conducted in Wuhan, China.

This study provides the first compelling evidence of a potential treatment that is approved and we have decades of experience with, Dr. Eleanor Fish of the Toronto General Hospital Research Institute and the University of Toronto Department of Immunology, in Canada, told Reuters Health by phone.

In a paper in Frontiers of Immunology, Dr. Fish and colleagues report the clinical course of 77 adults with confirmed COVID-19 who were treated with inhaled IFN-a2b (5 mU b.i.d), arbidol (200 mg t.i.d) or the combination of both broad-spectrum antivirals. All patients had only moderate illness; none required intensive care or oxygen supplementation or intubation.

Compared with arbidol alone (27.9 days), IFN-a2b treatment, with (20.3 days) or without arbidol (21.1 days), was associated with significantly accelerated viral clearance from the respiratory tract and reduced duration of elevated blood levels of the inflammatory markers interleukin-6 and C-reactive protein, the researchers report.

With IFN-a2b, we achieved accelerated viral clearance by about seven days, which is faster than with remdesivir, and we showed a reduction in circulating levels of inflammatory markers, which really exacerbate disease, Dr. Fish told Reuters Health.

Age, co-morbidities and sex did not negate the effects of IFN treatment on viral clearance times or on the reduction in the inflammatory markers.

This was an exploratory study, but I see absolutely no reason why these exploratory studies should not have relevancy. Very often they are dismissed because they are not the gold-standard randomized controlled trial, which are very difficult to do during an outbreak, Dr. Fish commented.

She and her colleagues previously demonstrated the therapeutic benefit of interferon during the Toronto SARS outbreak of 2002 and 2003. In that study, IFN treatment seemed to speed up the resolution of lung abnormalities in SARS-infected patients.

Interferons are broad-spectrum antivirals that should be considered as first responders for all acute virus infections that are severe, Dr. Fish said. The beauty is you dont have to know the virus. Because they are polytrophic, they target many different facets and stages of a virus lifecycle and in addition they muster and activate immune cells to help clear the virus.

In response to any and all viruses, the very first we do is make interferons. That, if nothing else, should tell you they are important. In addition, viruses have evolved to very specifically block interferon production. So coming in with interferon has the potential to override or swing the balance in favor of the host, she explained.

Dr. Fish noted that the biggest fear with interferon is the potential to generate a cytokine storm, but there is absolutely no evidence of that from the SARS outbreak in Toronto or in COVID-19 patients. If anything, the evidence was in the other direction, that we reduce the inflammatory response. Fear of cytokine storm I really think needs to be put to bed once and for all, Dr. Fish said.

Why inhaled interferon in this study? We went with what we could mobilize quickly and in Wuhan that was nebulized interferon, Dr. Fish said. Its unclear now which route of administration is going to be most efficient. We are doing trials now to answer that.

Dr. Fish also sees a potential prophylactic role for interferon for healthcare workers, others severely at risk, the elderly, the immunocompromised, and post-exposure individuals.

She and her coauthors report no conflicts of interest.

SOURCE: bit.ly/3dZyTzt Frontiers in Immunology, published online May 15, 2020.

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Interferon therapy may speed recovery from COVID-19 - Reuters

Focusing on the Genes that Matter Most: 10x Genomics Launches Targeted Gene Expression Solution – GlobeNewswire

PLEASANTON, Calif., May 20, 2020 (GLOBE NEWSWIRE) -- Building on its earlier reveal at the Advances in Genome Biology and Technology (AGBT) General Meeting, 10x Genomics, Inc. (Nasdaq: TXG) today launched its Targeted Gene Expression Solution for single cell and shortly following for spatial genomic research. Targeted Gene Expression gives scientists the ability to focus their research on the cell types and biomarkers that matter most to their research, enabling them to answer biological questions quickly and efficiently.

Our Targeted Gene Expression Solution provides customers the option to progress from unbiased discoveries to more focused research questions by looking at a subset of genes of interest, which can increase sample throughput, streamline data analysis, and reduce sequencing and computational burdens, said Ben Hindson, Co-founder, President and Chief Scientific Officer of 10x Genomics. By focusing on the genes that matter most, researchers can ultimately bring better treatments and therapeutics through clinical trials more efficiently.

This approach also captures unique gene expression signatures, probes disease and drug targets and allows for the discovery of mechanisms through which small molecules act. Using this technology, researchers can measure the effects of activation or inhibition of signalling pathways. In addition, it also allows the scientific community to dissect signalling pathways using targeted CRISPR screens.

10x-targeted single-cell RNA sequencing will allow us to focus on the expression of relevant immuno-oncology genes, streamline our data analysis and reduce our sequencing costs, said Aude Chapuis, M.D., Assistant Member, Program in Immunology Clinical Research Division, Fred Hutchinson Cancer Research Center.

10xs Targeted Gene Expression Solution benefits from a list of comprehensive pre-designed gene panels that are relevant for different research areas, including cancer, immunology, neuroscience and various disease and drug targeting applications. This technology is also customizable for individualized research goals, improving experimental efficiency while maintaining high gene sensitivities. A 10x Custom Panel Designer, which will be released later this year, will enable customers to either add on genes to existing panels or create fully custom panels.

Target enrichment of informative transcripts balances costs with biological insight, added Joseph Replogle, Weissman Lab, UCSF, and enables users to easily adapt the 10x Genomics platform to their question of interest."

The Targeted Gene Expression Solution is available for pre-orders beginning today. In conjunction with the announcement, 10x Genomics is offering a webinar to help researchers better understand how their research could benefit from Targeted Gene Expression. To learn more, visit 10xgenomics.com/products/targeted-gene-expression.

About 10x Genomics10x Genomics is a life science technology company building products to interrogate, understand and master biology to advance human health. The companys integrated solutions include instruments, consumables and software for analyzing biological systems at a resolution and scale that matches the complexity of biology. 10x Genomics products have been adopted by researchers around the world including 97 of the top 100 global research institutions and 19 of the top 20 global pharmaceutical companies, and have been cited in over 860 research papers on discoveries ranging from oncology to immunology and neuroscience. The company's patent portfolio comprises more than 740 issued patents and patent applications.

Forward Looking StatementsThis press release contains forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995 as contained in Section 27A of the Securities Act of 1933, as amended, and Section 21E of the Securities Exchange Act of 1934, as amended. Forward-looking statements generally can be identified by the use of forward-looking terminology such as may, will, should, expect, plan, anticipate, could, intend, target, project, contemplate, believe, estimate, predict, potential or continue or the negatives of these terms or variations of them or similar terminology. These forward-looking statements include statements regarding 10x Genomics, Inc.s current and upcoming products and solutions, which involve risks and uncertainties that could cause actual results to differ materially from the anticipated results and expectations expressed in these forward-looking statements. These statements are based on managements current expectations, forecasts, beliefs, assumptions and information currently available to management, and actual outcomes and results could differ materially from these statements due to a number of factors. These and additional risks and uncertainties that could affect 10x Genomics, Inc.s financial and operating results and cause actual results to differ materially from those indicated by the forward-looking statements made in this press release include those discussed under the captions "Risk Factors" and "Management's Discussion and Analysis of Financial Condition and Results of Operations" and elsewhere in the documents 10x Genomics, Inc. files with the Securities and Exchange Commission from time to time. The forward-looking statements in this press release are based on information available to 10x Genomics, Inc. as of the date hereof, and 10x Genomics, Inc. disclaims any obligation to update any forward-looking statements provided to reflect any change in its expectations or any change in events, conditions, or circumstances on which any such statement is based, except as required by law. These forward-looking statements should not be relied upon as representing 10x Genomics, Inc.s views as of any date subsequent to the date of this press release.

Disclosure Information10x Genomics uses filings with the Securities and Exchange Commission, its website (www.10xgenomics.com), press releases, public conference calls, public webcasts and its social media accounts as means of disclosing material non-public information and for complying with its disclosure obligations under Regulation FD.

ContactsInvestors:investors@10xgenomics.comMedia:media@10xgenomics.com

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Study may help to improve diagnosis and treatment of allergies – News-Medical.net

Reviewed by Emily Henderson, B.Sc.May 20 2020

Results from a study led by investigators at Massachusetts General Hospital may help to improve the diagnosis and treatment of allergies, pointing to a potential marker of these conditions and a new therapeutic strategy. The research is published in Nature.

Nearly one third of the world's population suffers from allergies. These conditions are caused by certain antibodies--called IgE antibodies--that bind to allergens such as peanuts and trigger a reaction that releases an array of molecules that cause allergic symptoms, and in extreme cases, potentially life-threatening anaphylaxis.

Scientists have been perplexed by the fact that many individuals have circulating allergen-specific IgE antibodies without ever developing allergy symptoms. For example, about half of the people who have peanut-specific IgE antibodies (or test positive to a peanut skin prick test) do not have peanut allergies. In addition, some allergic individuals outgrow their symptoms yet still retain detectable levels of circulating allergen-specific IgE.

To look into these mysteries, Robert Anthony, PhD, of the Center for Immunology and Inflammatory Diseases, and his colleagues compared IgE from individuals with peanut allergies with IgE from individuals without any allergies. The analyses revealed an increase in a particular sugar residue called sialic acid on IgE from peanut allergic individuals.

The researchers also found that adding sialic acid to IgE enhanced allergic reactions triggered by IgE in animal models, while removing sialic acid from IgE dampened these reactions and reduced anaphylaxis.

Our results indicate that quantifying sialic acid on IgE may serve as a marker for more accurate diagnoses of allergic disease, and that removal of sialic acid from IgE is a novel strategy for treating affected patients."

Dr. Robert Anthony, Center for Immunology and Inflammatory Diseases

Additional research on the mechanisms behind sialic acid's effects on IgE activity could provide additional insights into allergies and their causes. The team is currently planning studies to determine how removing sialic acid from IgE attenuates allergy, and develop strategies to exploit this therapeutically.

Source:

Journal reference:

Shade, K.C., et al. (2020) Sialylation of immunoglobulin E is a determinant of allergic pathogenicity. Nature. doi.org/10.1038/s41586-020-2311-z.

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Study may help to improve diagnosis and treatment of allergies - News-Medical.net