Category Archives: Genetics

Dr. Kevin Cavanaugh to speak on Peterson Corn Genetics on Saturday – The Times

Friday, August 27, 2021 4:00 AM

Dr. Kevin Cavanaugh, President of Peterson Corn Genetics, based in Story City, IA and relocated to Cicero, will speak at this Saturdays meeting of the Cicero Kiwanis Club.

Submit A Comment

Saturday, August 28, 2021

Username

Password

2021 The Timesa division of Sagamore News Media54 N 9th Street, Noblesville, IN

(317) 770-7777

life

Software 1998-2021 1up! Software, All Rights Reserved

More here:
Dr. Kevin Cavanaugh to speak on Peterson Corn Genetics on Saturday - The Times

The Bat Elixir: Geneticists Suspect that the Flying Mammal Holds the Key to Extended Healthy Life | The Weather Channel – Articles from The Weather…

A bat in flight.

Bats have developed a pretty bad rap sheet in the last few years. First, pop culture painted these mammals as a form of the blood-sucking Dracula, and then they were villainised for allegedly triggering a pandemic. Indeed, these poor creatures can't seem to catch a break! Aside from being adorable, bats have several other redeeming qualities like being the only mammals capable of flying and finding food even in complete darkness.

Of late, experts in genetics have uncovered a few startling facts about these Chiropterans, which could imply that they may hold the secret to healthy ageing. With the COVID-19 pandemic turning the spotlight on bats, their unique ability to stay alive against unmatched odds has also come under scrutiny.

The relationship between the size of a mammal, its metabolism, and lifespan is relatively straightforward. The larger the mammal, the slower its metabolism is, and this means a longer lifespan. While we humans ourselves are an exception to this rule, these flying mammals also deviate from this trend.

Some bats are known to live for 40 yearsthat's eight times longer than the lifespan of other animals their size! This unusually long lifespan of bats has always aroused the curiosity of scientistsit prompted them to ask the question, what was it that made these bats live longer?

The gene expression pattern in bats is very unique and has been associated with DNA repair, autophagy, immunity and tumour suppression, ensuring an extended health span for bats. Now, scientists are wondering if we could replicate a few such attributes on humans as well!

There's a cap-like structure called the telomere present at the end of each chromosomea microscopic threadlike part of the cell that carries part or all of the genetic material. This unique structure protects your chromosomes from damage. Every time your cells replicate, the chromosome loses just a little bit of the telomere. As time passes, this telomere gets very short, and either rides the wave of ageing or causes the cell to self-destruct. To put it succinctly, the shortening of your telomeres is why you age.

While this seems inevitable, studies conducted in the last few years revealed that the telomeres do not shorten in long-lived species of batslike the Myotis genus. This means that these species can protect their DNA for an unusually long-time in their lifespan.

A bat pup.

It's common knowledge that in humans, the body's ability to heal and repair any damage decreases considerably as we age. But researchers studied the genome of young, middle-aged, and old bats and found that their ability to repair DNA and damage caused by age increased as they grew older.

Another quality that contributes to their longevity is their ability to control their immune responses. With an over-excited immune response, humans tend to succumb to infections like COVID-19 quicker. In COVID-19 patients with regulated immune responses, the risk of ending up on the ventilator is much lower, reveals research.

Similarly, a controlled immune response could be why bats are able to carry numerous deadly pathogens like the coronavirus without succumbing to them easily.

Humans and bats have many similar genes but with a tweak here and a nip there. So, if we could someday discover what factors elicit these controlled immune responses and telomere shortening avoidance in bats and replicate it in humans, it would be a massive leap towards the utopian dream of a healthy, long life!

**

For weather, science, and COVID-19 updates on the go, download The Weather Channel App (on Android and iOS store). It's free!

See the original post:
The Bat Elixir: Geneticists Suspect that the Flying Mammal Holds the Key to Extended Healthy Life | The Weather Channel - Articles from The Weather...

Dasa expands partnership with SOPHiA GENETICS for the first decentralized cancer biomarker detection solution in Latin America – PRNewswire

SO PAULO, Brazil and BOSTON, Aug. 24, 2021 /PRNewswire/ -- Dasa, the largest integrated healthcare network in Brazil, has chosen to expand upon its partnership with SOPHiA GENETICS SA (Nasdaq: SOPH) to offer the first decentralized HRD (Homologous recombination deficiency) analytics solution in Latin America. HRD is a complex biomarker, important for PARP inhibitors, that helps identify whether cancer patients may respond better to specific treatments, and its use could ultimately lead to personalized therapies that benefit the individual patient.

Renowned in Brazil and abroad, Dasa serves more than 20 million patients per year including approximately 10% of the Brazilian population - through its more than 250,000 medical partners comprised of more than 59 diagnostic medicine brands and hospitals. With the help of the knowledge pooling SOPHiA DDMTM platform, Dasa has drawn further insights upon the many complex molecular datasets that they analyze for the benefit of their patients.

Today's announcement further builds on the partnership that began between the two companies in 2016, when Dasa chose SOPHiA GENETICS to build the original workflow for its genomics lab. This partnership further evolved when Dasa implemented SOPHiA DDMTMRadiomics and Trial Match solutions in 2020 to create the first multimodal approach in the region.For half a decade, the two companies have pioneered new ways to enable scalability and high output screening on complex assays, shortening the path from research to consumer applications and more.

"SOPHiA GENETICS' decentralized approach gives us automated and reproducible results in-house. Their expert bioinformatics team got us up and running on our own, helping us save considerable time, gain efficiency, and offer a more affordable solution for patients," said Gustavo Riedel, Business Director for Genomics and LATAM Clinical Research at Dasa.

"Dasa initially wanted to be able to track the entire diagnostic journey for their cancer patients. With such a large regional network, this is a task that's not unlike navigating an ocean of data through a hurricane. Through our past collaborations and now the addition of our decentralized HRD solution - SOPHiA GENETICS is able to act as the lighthouse that guides Dasa through the storm as they make new discoveries, helping both short and long-term patient care," said Jurgi Camblong, Co-founder and CEO of SOPHiA GENETICS.

To learn more about how SOPHiA GENETICS data-driven insights are improving diagnosis, treatment and drug development for patients and the larger medical community, visit sophiagenetics.com.

About SOPHiA GENETICS:SOPHiA GENETICS is a healthcare technology company dedicated to establishing the practice of data-driven medicine as the standard of care and for life sciences research. It is the creator of the SOPHiA DDM Platform, a cloud-based SaaS platform capable of analyzing data and generating insights from complex multimodal data sets and different diagnostic modalities. The SOPHiA DDM Platform and related solutions, products and services are currently used by more than 780 hospital, laboratory, and biopharma institutions globally.

More info:SOPHiAGENETICS.COM; follow@SOPHiAGENETICSon Twitter

About Dasa:Dasa is the largest integrated healthcare network in Brazil, serving more than 20 million people a year, with high technology, intuitive experience and an attitude ahead of time. With more than 40 thousand employees and 250 thousand partner doctors, Dasa is the healthcare solution that people want and that the world needs, being present at every stage of care.

Dasa believes that in order to take care, it is always necessary to take care fully. Therefore, it looks at health management in a preventive, predictive and personalized way. It integrates diagnostic medicine, hospitals, genomics, oncology, care coordination, emergency care, telemedicine, clinical research and science. In all, it has 15 reference hospitals (considering its own network, inorganic growth and deals that are still under regulatory approval), and more than 59 brands including diagnostic medicine and hospitals, distributed in more than 900 units in Brazil.

Dasa guarantees agile, uncomplicated and friction-free navigation of the health journey, for both patients and physicians through its management platform, Nav. In addition, it offers integrated and innovative corporate health solutions through Dasa Empresas. We are Dasa and we are for life. For more information, access: http://www.dasa.com.br.

Contact: [emailprotected]

SOURCE SOPHiA GENETICS

Continue reading here:
Dasa expands partnership with SOPHiA GENETICS for the first decentralized cancer biomarker detection solution in Latin America - PRNewswire

Genetic Analyses Trace How Mutations Accumulate in Cells of the Human Body Over Time – GenomeWeb

NEW YORK A suite of new studies has examined how one cell develops into all the tissues of the human body by tracing and investigating the mutations they acquire over time.

As cells divide, they acquire mutations that are then passed on to their daughter cells. The resulting patterns of mutations can be used to trace back a cell's family tree, possibly all the way to the first cell. In four new studies appearing Wednesday in Nature, teams of researchers from across the world used this approach to study the earliest stages of human development as well as the later accumulation of somatic mutations, including ones linked to cancer.

"Exploring the human body via the mutations cells acquire as we age is as close as we can get to studying human biology in vivo," Luiza Moore, a researcher at the Wellcome Sanger Institute and first author of one of the studies, said in a statement. "Our life history can be found in the history of our cells, but these studies show that this history is more complex than we might have assumed."

Tracing these mutations back in time revealed differences in mutation rates very early in embryonic development. Researchers led by the Sanger Institute's Michael Stratton uncovered a pattern of mutations that indicated a high initial mutation rate that then fell in a study that combined laser capture microdissections with whole-genome sequencing of samples from three individuals. A team led by the Korea Advanced Institute of Science and Technology's Young Seok Ju similarly found a high mutational rate during the early stages of development that then declined, using a capture-recapture approach.

The Stratton-led team estimated that the first two cell divisions had mutation rates of 2.4 per cell per generation, which then fell to 0.7 per cell per generation. This dip, they said, is likely due to the activation of the zygotic genome that increases the ability to repair DNA.

These early cells also contributed unequally to the development of subsequent lineages, though the degree of asymmetry varied from person to person. Ju and his colleagues reported, for instance, that for one individual in their analysis, 112 early lineages split at a ratio of 6.5:1, rather than the expected 1:1.

Stratton and his colleagues, meanwhile, reported that one individual in their study had a 69:31 contribution of the initial daughter cells to subsequent lineages, while another had a 93:7 ratio based on bulk brain samples, but an 81:19 ratio based on colon samples.

This, they said, indicates that the lineage commitment of cells is not fixed. Ju and his colleagues likewise said their finding suggested a stochasticity of clonal segregation in humans, unlike the deterministic embryogenesis observed in C. elegans.

These analyses also shed light on the development of somatic mutations later in life. KAIST's Ju and his colleagues, for instance, found most mutations are specific to certain clones, while in a separate study, the Sanger's Moore and her colleagues, who examined the mutational landscape of 29 cell types from three individuals through sequencing, found mutationrates varied by cell type and were very low in spermatogonia.

Ju and his colleagues also reported that normal tissues harbored known mutational signatures, including UV-mediated DNA damage and endogenous clock-like mutagenesis. Similarly, Moore and her colleagues noted known mutational signatures within normal tissues. They found, for instance, the aging-related SBS1 and SBS5 mutational signatures to be the most common signatures across all cell types, while other signatures were more prominent in certain cell types but not others. The SBS88 signature, which is due to a strain of E. coli, for example, was present among colorectal and appendiceal crypts.

Chen Wu, an investigator at the Chinese Academy of Medical Sciences, and her colleagues also found the aging-related SBS1 and SBS5 mutational signatures to be common among normal tissues, based on their sequencing analysis of microbiopsies from five individuals. Other tissues, like the liver and lung, also harbored other mutational signature like SBS4, which is associated with tobacco smoking.

Some of the mutations present in normal somatic tissues are typically associated with cancer, Wu and her colleagues added. They found mutations in 32 cancer driver genes were widespread among their normal tissue samples, though varied by organ. For instance, driver mutations were present in 6.5 percent of pancreas parenchyma samples and in 73.8 percent of esophageal samples.

Additionally, many normal tissue samples harbored as many as three cancer driver mutations. This, Harvard Medical School's Kamila Naxerova noted in a related commentary in Nature, begins to blur the line between what is normal and what is cancer. "Indeed, if cells with three driver mutations can easily be found in a small tissue sample, cells with four or five drivers probably exist in that tissue as well without necessarily giving rise to cancer," she wrote. "These new insights invite us to reconsider how we genetically define cancer."

Overall, she added that "the four studies provide an impressive demonstration of the power of modern genetics to decode the cellular dynamics that unfold in our bodies over time."

See the article here:
Genetic Analyses Trace How Mutations Accumulate in Cells of the Human Body Over Time - GenomeWeb

Study Finds Genetics Rather Than Environment Are Source of THC Levels in Hemp – AgNet West

A recent study from Cornell University has found no link between increases in the THC content in hemp with environmental or biological stresses. Guidelines from USDAs Agricultural Marketing Service note that the threshold for THC content is 0.3 percent. USDA has recently raised what it considers to be a negligent crop from THC levels of .5 percent to one percent, reducing some risk for growers. Senior author of the study and professor in the horticulture section of the School of Integrative Plant Science in the College of Agriculture and Life Sciences, Larry Smart said that their findings should help to provide some comfort regarding the CBD to THC ratio in hemp.

Theresearch projectincluded control plots and five stress treatments that were applied to three genetically unrelated high-CBD hemp cultivars. The stress treatments included flood conditions, physical wounding, exposure to a particular plant growth regulator, powdery mildew, and herbicide. Over the four-week maturation period, tests showed that THC content increased proportionally for all of the different stress treatments imposed on the different cultivars. The study provides support for genetics being the determining factor for THC content in hemp plants rather than environmental stresses. Further research and breeding will be needed to better determine the appropriate genetics for achieving a high CDB content with acceptable levels of THC.

Listen to the radio report below.

Related

Read more:
Study Finds Genetics Rather Than Environment Are Source of THC Levels in Hemp - AgNet West

Around the World in 50000 Years: The Genetics of Race – The MIT Press Reader

To fully understand race and genetics, we have to consider where we came from and how we got here.

By: Stanley Fields and Mark Johnston

The Food and Drug Administration (FDA) approved BiDil, a drug for the treatment of heart failure in self-identified black patients. . . . Todays approval of a drug to treat severe heart failure in [a] self-identified black population is a striking example of how a treatment can benefit some patients even if it does not help all patients, said Dr. Robert Temple, FDA Associate Director of Medical Policy. The information presented to the FDA clearly showed that blacks suffering from heart failure will now have an additional safe and effective option for treating their condition. In the future, we hope to discover characteristics that identify people of any race who might be helped by BiDil.

FDA News, June 23, 2005

Top-seeded Jimmy Connors stepped onto Centre Court at Wimbledon for the 1975 mens final having declared that it would be just another day at the office. Ranked number one in the world, the 22-year-old defending Wimbledon champion had not dropped a single set en route to the final. The brash left-hander was the overwhelming favorite against the other finalist, sixth-seeded Arthur Ashe. Connors was famed for his explosive outbursts on the court; the 31-year-old Ashe calmly closed his eyes and meditated between games.

The three previous times these rivals had met, Connors had prevailed decisively, and commentators at Wimbledon that day hoped only that Ashe would not be embarrassed on the court. To their surprise, Ashe began the match in dazzling fashion. Instead of trying to out-hit the hard-slugging Connors, Ashe brilliantly executed a game plan of slices, chip returns, lobs, and other change-of-pace shots, to dominate the first two sets 61.

Connors, never a quitter, fought back to win the third set 75, keeping alive his hopes for a stirring comeback. He started out the fourth set strongly to gain a 30 advantage and was but a point away from 41, but Ashe, resolutely sticking to his game plan even when on the defensive, rallied to win the set and match and become the first and still the only African American to win the Mens Championship of the All England Club. It was the only time he would ever defeat Connors.

Four years after his triumph at Wimbledon, while participating in a tennis clinic, Ashe suffered a heart attack that necessitated quadruple bypass surgery four months later. It forced his retirement from tennis soon after, and his continuing heart problems led to more surgery in 1983.

Ashe never forgot his childhood in segregated Richmond, Virginia, where he had been excluded from whites-only tennis tournaments. Or the Davis Cup match in 1965 between the United States and Mexico that had to be moved from the private Dallas Country Club to a public facility because club members objected to his presence on their courts. He once said that if he was remembered only as a tennis player he would have been a failure. But he is remembered as so much more.

Few issues are as contentious in American society as race. As stellar a citizen of court and country as Ashe was, he was at one time called an Uncle Tom for appearing to legitimize the South African government. At other times he was criticized for not doing enough to further the careers of young black tennis players. Given the history of race in America, the relationship between race and genetics is a landmine for researchers who attempt to study the subject. A host of issues the very definition of race, the dispute over whether race is a valid categorization of people, the question of which traits might have a race-specific genetic basis, the utility of using racial identity to assist in finding disease genes, and the value of targeting drugs to certain racial groups provoke intense feelings and heated debate. Because humans seem to have a need to define and differentiate themselves, and because many Americans believe race is so evident a category since it seems to be plainly visible in front of their eyes, the use of race as a classifier of people pervades much of our collective daily existence.

Given the history of race in America, the relationship between race and genetics is a landmine for researchers who attempt to study the subject.

In tackling the issue of genetics and race, we are painfully aware that the widespread racial discrimination in Americas history was often aided by ostensibly objective geneticists claiming to draw on the latest scientific orthodoxy. Efforts from the 17th century onward to classify humans into major groupings perpetuated the notion that the classifiers invariably white men belonged to a nobler group than did members of other races. This kind of eugenic thinking culminated in the United States with Jim Crow laws such as the one-drop rule, as formulated in the Racial Integrity Act, passed by the Virginia legislature in 1924: It shall hereafter be unlawful for any white person in this State to marry any save a white person, or a person with no other admixture of blood than white and American Indian. For the purpose of this act, the term white person shall apply only to the person who has no trace whatsoever of any blood other than Caucasian (italics added). This law stood until it was declared unconstitutional by the U.S. Supreme Court in 1967.

It would be most unfortunate if recent findings from the Human Genome Project and our increasing ability to characterize our personal DNA codes led to a revival of genetic determinism based on racial groupings. Particularly misplaced is the notion that if a genetic association between a disease and a racial group is found, then all members of that group, including individuals who dont carry the gene variant disposing them to the disease, share the same risk of the disease, especially when the group at risk is not even clearly defined. Even worse is the view that some studies can be construed to support the presumption of a racially determined genetic basis for traits such as athletic ability, intelligence, or criminality, without any good evidence for such a claim.

There is no question that various communities in our society today face enormous disparities in their access to health care, education and employment, and in their diets and levels of stress. Overwhelmingly these disparities boil down not to genetic differences but to economic disadvantages: health is wealth. Yet even when the statisticians account for economic inequality in access to health care and treatments, certain diseases have a much greater prevalence or significantly more severe outcomes in certain populations traditionally viewed as races. Why is this the case?

To understand race and genetics, we have to consider where we came from and how we got here. The fossil evidence suggests that anatomically modern humans, those with physical characteristics not too different from our own, emerged in Africa about 200,000 years ago an exceedingly brief period in evolutionary time. These humans were part of the lineage of hominids, the family of great apes that comprises humans, chimpanzees, gorillas, and orangutans. The branch of that family that leads to humans split off about six million years ago from the last ancestor we shared with our closest relatives, the chimpanzees; the chimpanzees DNA sequence is about 99 percent identical to ours. The human evolutionary tree indicates that humans did not evolve from current chimpanzees (or monkeys or gorillas or apes). Rather, both we and chimpanzees evolved from an ancestor no longer in existence who lived about six million years ago and whose various descendants would eventually give rise to two lineages, one that became us, and one that led to todays chimpanzees.

Anatomically modern humans first appeared in sub-Saharan Africa, and groups of them ventured out of Africa around 50,000 years ago, spreading throughout the Eurasian landmass the Mediterranean coast, Europe, Russia, and central Asia and into Australia. They got to Siberia by 30,000 years ago, and then moved across the Bering Strait and into the Americas about 15,000 years ago, along the way inventing paper in China, mathematics in the Middle East, and country music in the United States. The key point to remember here is that humans spent about 150,000 years in Africa before they colonized the rest of the globe.

Upon their arrival in Eurasia, these early humans likely met the Neanderthals, an abundant hominid species that inhabited Europe and western Asia from about 400,000 to 30,000 years ago. Neanderthals and ancient humans last shared a common ancestor about 500,000 years ago, long before humans walked out of Africa. There is evidence that the globetrotting humans met their Neanderthal cousins in several places, but a comparison of our DNA to theirs suggests that the two groups never got to be very intimate.

Why did it take so long for early humans to venture out of Africa to enjoy the abundance of the rest of the world? It was around the time of the initial migrations out of Africa that humans acquired more sophisticated tools, ornaments, and weapons, even indulging in abstract art, all activities that were evidence of their increased intelligence. This greater brain capacity correlates with a major increase in the population during that time, which may have made them more able to strike out to find new places in the world.

The implications of this model of human evolution are profound. It means that all six-plus billion of us on earth today descended from a small number of people, probably no more than 10,000, who lived in Africa around 50,000 years ago. The migrants who left Africa for points distant were a small subset of all the individuals then alive in Africa, a fact that has far-reaching consequences for human genetics.

If we look at the personal DNA codes of several present-day people to see how many DNA sequence differences we find in them that is, in how many positions in the genome one person has, say, an A on one strand, and another person has a G we learn that the number of these variants is significantly greater among Africans than it is among people in other geographic groups. Furthermore, most of the variation seen in populations outside of Africa is also present in the people who live in Africa. For example, if we find that the base at a particular position in the genomes of some Asian people is usually a C and occasionally a T, then we typically find among the African population both the C and the T (and maybe a G as well) at that position. This is because the emigrants brought with them only a sampling of the genetic diversity in the population they left behind. In this case only people with C and T at the position in question emigrated; people with a G at that position stayed behind. Some of the variation reached locations around the globe, but all of it was left behind in the people who stayed back to hold down the fort in Africa. Of course, all humans those living in Africa as well as those who populated other lands continued to evolve.

The consequence of a slowly spreading human population is Race is space, as Rick Kittles of Howard University and Kenneth Weiss of Pennsylvania State University put it. A new DNA sequence variation that arises in a single individual may spread geographically, but it will move slowly because human generations are long, about 20 years, and in our evolutionary history prior to the advent of internet-based matchmakers we tended to mate only with our neighbors. So if a particular gene variant is found in populations around the globe, it is likely to be ancient, and was probably present 50,000 years ago, when our ancestors hiked out of Africa.

The geographic distance between two populations, the greater their genetic differences.

Conversely, rare variants tend to be much more recent, meaning that they have arisen within the last 50,000 years, and tend to be found only in individuals living in particular regions. In other words, gene variants have been accumulating in people living in Africa for about 200,000 years, much longer than the 50,000 years they have had to accumulate in the population residing on the rest of the planet.

The geographic clustering of early humans did not generate discrete racial groups. Instead, the genetic variation in humans spread in gradients, with the frequency of one particular form of a gene increasing in some directions, decreasing in others. Thus the greater the geographic distance between two populations, the greater their genetic differences: The development of different races is simply due to the space separating them that leads to two genetically distinct populations.

So in light of this history, what is race? There is no generally and consistently accepted definition. Some define a racial group according to physical features such as skin color and hair texture, which reflect a shared ancestry. But others see race as purely an invention, often of white males, to justify cultural practices. Regardless of the conflicting definitions, we think its fair to ask whether a biological basis for the concept of race exists.

The key point to bear in mind when discussing possible biological groupings of humans is that no matter what genes you examine and no matter how you define your population groups, about 85 to 95 percent of all the genetic variation you observe in our personal DNA codes is found within all of the population groups; the small balance of variation is all that exists between groups. Imagine that we took random groups of citizens from Cameroon, China, Canada, and the Czech Republic and sequenced all six billion base-pairs of their personal DNA codes (something well be able to do soon). Wed find a lot of differences within each of them six million or so. But the differences that wed find among those from Cameroon are very largely the same ones wed find in common among people belonging to the other three groups. Could we use these sequence data to define a gene or genes for being Cameroonian, or Chinese, or Canadian, or Czech? Of course not! No such genes exist. We are all way too similar in our genetic makeup for that to be possible. Nonetheless, if you compared the variation present in say, the Cameroonian, to the variation present in all the worlds population groups, you would probably find enough specific differences to be able to place that individual quite close to Cameroon.

What about the 5 to 15 percent of the variations that have been found to be typical of one human group or another? Do some of these affect skin color or hair texture or other differences in appearance? Of course they do. All of our physical traits are ultimately determined by our genes. We humans are so anthropocentric that when we look closely at our fellow beings, we notice the tiny differences in the shape of an eye, the slope of a nose, the thickness of a lip. But climb only a hundred feet up a hill and you will have a hard time distinguishing those characteristics. From that perspective we are all nearly identical: the same size, the same shape, with the same number of arms and legs, the same locations for eyes and ears, the same everything else. Thus, classifying individuals into a few groups based on minor differences in appearance and then using those groupings to make inferences about the genetic basis of complex social behaviors is to ignore the huge amount of genetic variation everyone in the world shares.

How do the worldwide patterns of genetic variation that exist affect our ability to identify disease genes? Clearly, some diseases are more prevalent in individuals in one group than in those of another. The prevalence of Tay-Sachs disease is higher in Ashkenazi Jews than in other groups; sickle-cell anemia is most frequent in Africans; phenylketonuria is essentially absent in Africans. We do not sample Lapps to study Tay-Sachs Disease, Norwegians for sickle cell anemia, or Nigerians for PKU, write Kittles and Weiss.

So heres the heart of the race/genetic relationship. Unless and until widespread intermarriage among all humans leads to one homogeneous population, we can more or less divide most of the worldwide pattern of local genetic variation into a few large general, and quite rough, groupings: Africans, Europeans and Middle Easterners, east Asians, and Native Americans. (This oversimplified scheme leaves out a host of smaller subpopulations.) These groupings which you can call races if you want contain that small percentage of rare DNA sequence variation (5 to 15 percent) that produces the diversity in the global police lineup.

More important, these rare variants contribute significantly to differences in peoples risk for certain diseases. For example, African American women often develop breast cancer at a younger age than white women who get the disease, and have nearly double the rate of an aggressive form that is resistant to many treatments. Physicians who treat breast cancer patients are beginning to look to Africa to explain some of these differences, hoping to find genetic variants there that may predispose black women to this virulent form of the disease. Another example: Genetic variants among Ashkenazi Jews, a small subgroup of all humans with European origins, lead to an incidence of Tay-Sachs disease 100 times greater than is found in other populations. But these differences in our DNA dont reflect some kind of inferior genetics, any more than the much higher rate of PKU in people with lighter skin than in people with darker skin says anything about racial fitness.

Using minor differences in appearance to make inferences about the genetic basis of complex social behaviors is to ignore the huge amount of genetic variation everyone in the world shares.

What about BiDil and the targeting of pharmaceuticals to racial groups? This drug is actually a combination of two drugs, hydralazine and isosorbide dinitrate, that had been available for decades and are sold in generic form. Earlier studies of the drug combination had not produced evidence convincing enough to justify its approval, but an analysis of subgroups of patients a suspect form of data analysis because the question being tested is stated after you have the answer revealed a benefit of the drug for blacks. This finding inspired a new trial called the African-American Heart Failure Trial, carried out only on self-identified African Americans. The results were stunning: BiDil, used along with conventional therapies, led to a 43 percent increase in the rate of survival of heart failure patients compared to those in the study treated only with conventional therapies.

Surely you can appreciate that BiDil does not target the products of genes that influence skin color or hair texture or facial features. Rather, some combination of differences in hypertension, salt sensitivity, and other physiological properties in this self-identified population might differ from the rest of the population such that this drug is especially effective for them. As of this writing, the specific differences in our personal DNA codes that are the basis for this difference arent known, but they probably will be soon. At that point, regardless of your skin color or what ethnic group you associate yourself with, if you have the BiDil-sensitive variations in your DNA code, the drug will likely help you. And however dark your skin, or however closely you identify yourself with others with dark skin, if you dont have those particular DNA sequence variations in your DNA code you wont be helped by BiDil.

We dont know whether BiDil would have helped Arthur Ashe after his heart disease became apparent. It likely wouldnt have mattered anyway. Five years after his second heart surgery, Ashe was hospitalized for toxoplasmosis, a parasitic infection, and learned that he had AIDS, apparently caused by the presence of the Human Immunodeficiency Virus (HIV) in blood he received during his surgery in 1983. Ashe held a press conference in April 1992 to announce that he had the disease. A year later he was dead of AIDS-related pneumonia.

Will the knowledge of the specific DNA sequence variants each of us carry in our personal DNA codes which affect disease susceptibility, drug efficacy, and many more things that are important to us end the racism in America that Ashe worked hard to overcome? Will health disparities disappear because we can determine the sequence of DNA and therefore no longer need to classify individuals on the basis of appearance to take advantage of their genetic differences? Likely not. We know all too well that those societal outcomes wont be realized because of new genetic knowledge. But we can hope that genetic knowledge wont make the problems any worse.

Someday, perhaps, well come to appreciate that even though the 0.1 percent difference in the DNA between any two of us might mean the difference between being or not being disposed to get a particular disease, the 99.9 percent similarity means that were all close relatives: We are all descended from the same ancestors who came out of Africa not so long ago.

Stanley Fields is Professor of Genome Sciences and Medicine at the University of Washington and a Howard Hughes Medical Institute Investigator. Mark Johnston is Professor and Chair of the Department of Biochemistry and Molecular Genetics at the University of Colorado School of Medicine and Editor-in-Chief of the journal Genetics. Fields and Johnston are the authors of Genetic Twists of Fate.

Go here to read the rest:
Around the World in 50000 Years: The Genetics of Race - The MIT Press Reader

Genetic Testing Gaining Popularity In Healthcare: All You Need To Know About It – TheHealthSite

If the term 'genetic testing' is something new to you, you're not alone. Not many people in India are aware of this advanced technology that can help determine a person's susceptibility to various diseases, as well as prevent or delay their onset with personalised healthcare. Because genetic testing had been largely used only for the specific diagnosis/detection purpose and neonatal healthcare in India, people were unaware of the vast benefits of genetic testing. Over the last few years, however, personalized genetic testing has gained popularity for the prevention of diseases like cancer, tuberculosis, etc. The increasing awareness among the population regarding early diagnosis coupled with rising expenditure on preventive measures has further fuelled the demand for genetic testing in the market, specifically in the areas of personalized healthcare and screening for predisposition of various diseases.

Let's learn more about genetic testing, including its uses, benefits, and demand in India, from Amol Naikawadi, Joint Managing Director, Indus Health Plus Pvt Ltd.

Indus Health Plus launched its Genetic Testing Services in India in December 2018. Since its launch, the company said, it has observed that the demand for such packages is not only in metros, but tier II and III cities are also equally responding positively to this trend.

Below are excerpts from an exclusive email interaction with Naikawadi -

The entire structure and functioning of the body are dependent on our genes. For example, genes, a short section of DNA, contain instructions that instruct cells to make molecules called proteins. Different proteins carry out most of the functions inside human body. For example, various hormones, enzymes, antibodies, etc. all are proteins whose synthesis instructions are encoded in the genes.

Genes also carry information that determines our hair colour, height, eye colour, etc. With genes playing such an important role in the overall crux of our being, they also can help prevent diseases. How - we might ask? The answer is through genetic testing.

A technologically advanced prevention tool that can personalise an individual's health, thereby reducing the costs associated with non-communicable diseases (NCDs). It identifies the changes in one's genes, proteins, chromosomes, thus determining a person's susceptibility to genetic disorders.

There are different types of genetic tests available for various concerns. Such as:

These tests help us understand the genetic variations related to our health traits, the kind of food we're sensitive to, our body's metabolism rate, the medicine we should be consuming, etc. We can also receive information on the hereditary health risks, fitness and skincare routine we should ideally follow.

In pregnant women between the 10th and 12th week of pregnancy, genetic testing ensures if the foetus is developing well and is healthy. Newborn screening shows whether the toddler has any metabolic or congenital abnormality. Generally, the procedure and results are better understood under a geneticist's guidance.

The two predominant kinds of the test are clinical genetic testing and personal genomics testing.

Clinical Genetic Testing It is the laboratory analysis of the DNA or RNA to pre-empt the possibility of any disease. The purpose of this test is to anticipate an illness before the symptoms even arise and get a definite diagnosis. An individual who has symptoms of a genetic disorder might undergo a diagnostic test for precise detection.

Personal Genomic Testing - This kind plays a vital role in the field of personalised and preventive healthcare. It can help anticipate an individual's susceptibility to a disease, the kind of drugs and the type of treatment, best suited to their health.

Thus, the test allows one to receive an analysis of their DNA:

With work and academic pressure piling over, many don't bother keeping their health a top priority. People spend hours sitting in front of their laptops working or binge-watching, thus leading a sedentary life. Multiple NCDs arise due to unhealthy eating, no exercise, substance (drugs, tobacco, and alcohol) abuse, etc. Thus, causing heart disorders, fatty liver, diabetes and many other health conditions. Exposure to environmental toxins, air pollution, have also increased incidence of asthma, cancer and other health conditions.

However, in most lifestyle diseases, we can avoid the risks by modifying our diet, adding a suitable fitness regime, taking necessary precautions, etc. NCDs cause severe trauma and out-of-pocket expenses for the family. An increased level of awareness and education about early detection and prevention can reduce them.

A personalised genetic test identifies biological markers present in an individual that may be associated with an increased risk for specific diseases, thus, reducing the likelihood of NCDs. It also allows doctors to treat the patient more effectively, and in most cases, the individual can live a long and healthy life.

In India, the majority don't have an idea about genetic testing. People mostly know the term famously in the context of DNA tests with relevance to paternity testing and forensic investigation.

Masses do not know the relevance of genetic testing in terms of health and fitness. Even the elite class, the educated section including clinicians, are not entirely aware of the potential benefits of genetic testing.

When an individual move to the interiors, people from rural areas have little to no information on genetic testing. And the reasons are evidently because of a lack of access to quality healthcare and limited diagnostic centres or hospitals there. The concept of genetic testing is a foreign entity in these areas.

Lack of awareness and acceptance both are bottlenecks in the implementation of genetic testing in routine healthcare. A few reasons for the absence of mass popularity of genetic testing are:

Certain genetic variants determine one's response to a specific type of exercise and how it affects their body. For example, people who have a specific variant in the Fat mass and obesity (FTO) gene that increases body weight are more likely to benefit from physical exercise. At the same time, some are genetically wired to feel fatigued and are best suited for light workouts.

Genetic variations also affect a person's food taste, likes and dislikes, food intolerances, etc. An excellent example of genetic controlled tasting ability is the presence of phenylthiocarbamide (PTC) in food like cauliflower, Brussel sprouts, wine, pepper, kale, etc. Based on one's genes, they can either find the element very bitter or tasteless. The single gene TAS2R38 is responsible for an individual's ability to taste PTC.

Gene variations are also partially responsible for metabolism rate, absorption of food, catabolism, storage, biosynthesis, and excretion.

Our genes determine whether we're allergic to gluten or are lactose intolerant. Overall, a genetic test gives a detailed understanding of the patient's genetic make-up, thus helping a nutritionist form a personalised diet plan.

Nutrigenetics: It is the study of how genes determine the effects nutrients have on the body and health. Response of the body to the food we eat is based on our nutrigenetic profile. This is because specific genes are associated with nutrient absorption and utilization, food intolerances and sensitivities, and nutritional requirements and deficiencies.

Sports Genomics Concept: It is a relatively new branch of genetics in the discipline. Sports genomics is the study of the genetic make-up or architecture that contribute to an athlete's performance. The same principle is applicable to every individual who plan to personalize their fitness routine as genes influences our response to many exercise-related traits.

As mentioned previously, genetic tests help us smartly eradicate guesswork and approach fitness in the best way. The reports make us conscious about our endurance to a workout plan. Based on this, experts might recommend either a high-intensity or a more extended training session.

India is slowly starting to look at genetic testing as an essential preventive healthcare tool. Many more diagnostic centres have begun entering this domain. Healthcare is evolving every day, and genetic testing will go a long way in revolutionising it.

_____

Join us on

Read the original here:
Genetic Testing Gaining Popularity In Healthcare: All You Need To Know About It - TheHealthSite

The Genetic Architecture of Parkinsons Disease in Latino Populations – Technology Networks

An international research team led by Cleveland Clinic has presented the most comprehensive characterization of the underlying genetic basis for Parkinsons disease (PD) in Latinos to date, marking an important step towards more inclusive PD genetic research.

Parkinsons disease impacts all ethnic groups, but since genetic studies have largely been limited to individuals of European and East Asian ancestry, little is known about the genetic architecture of the disease in Latino populations, said Ignacio Mata, Ph.D., assistant staff in the Genomic Medicine Institute and lead author on the study. As we see incidence rates rise in nearly every global region, the importance of greater diversity in Parkinsons research cannot be overlooked.

In this study, published in Annals of Neurology, Dr. Mata and international collaborators performed the first ever genome-wide association study (GWAS) of Latino PD patients from South America. Their analysis relied on patient data from the worlds largest PD case-control cohort of Latinos, called the Latin American Research Consortium on the Genetics of Parkinsons Disease (LARGE-PD), which includes individuals from 35 institutions in 12 countries across Latin America and the Caribbean.

Notably, they demonstrated that SNCA, a gene previously linked to PD in European and East Asian populations, had genome-wide significance in the LARGE-PD cohort and a replication cohort, indicating its critical role in PD etiology in Latinos. In addition, they identified the novel gene NRROS as a biologically plausible PD risk gene, particularly in individuals from Peru, but indicated that further studies are needed to validate this finding.

The researchers then assessed the significance of PD variants previously identified in European and East Asian populations for the LARGE-PD cohort, and found a substantial overlap of PD genetic architecture between Europeans and Latinos. They also explored the relationship between PD risk and Latino population ancestry and pinpointed variants associated with African and Native American ancestries that may influence PD risk.

As we continue our work to gain comprehensive understanding of population-specific PD genetic architecture in Latino populations, inclusion of Latino PD patients from diverse ancestral backgrounds, such as those with significant Native American or African ancestries, is a necessity, Dr. Mata said. Parkinsons is a global disease, so it is crucial that genetic studies reflect the wide diversity of patients with the disease.

Reference:Sarihan EI, Prez-Palma E, Niestroj L-M, et al. Genome-wide analysis of copy number variation in Latin American Parkinson's disease patients. Mov. Disord. 2021;36(2):434-441. doi:10.1002/mds.28353

This article has been republished from the following materials. Note: material may have been edited for length and content. For further information, please contact the cited source.

Read more:
The Genetic Architecture of Parkinsons Disease in Latino Populations - Technology Networks

Cornell study indicates hemp goes hot due to genetics, not weather or environment – Hemp Industry Daily

Why do I have to complete a CAPTCHA?

Completing the CAPTCHA proves you are a human and gives you temporary access to the web property.

If you are on a personal connection, like at home, you can run an anti-virus scan on your device to make sure it is not infected with malware.

If you are at an office or shared network, you can ask the network administrator to run a scan across the network looking for misconfigured or infected devices.

Another way to prevent getting this page in the future is to use Privacy Pass. You may need to download version 2.0 now from the Firefox Add-ons Store.

See more here:
Cornell study indicates hemp goes hot due to genetics, not weather or environment - Hemp Industry Daily

DNA Hoarders: Genetic Duplication Linked to the Origin and Evolution of Pine Trees and Their Relatives – SciTechDaily

New research shows genome duplication in the ancestor of modern gymnosperms, a group of seed plants that includes cypresses and pines, might have directly contributed to the origin of the group over 350 million years ago. Credit: Kristen Grace/Florida Museum of Natural History

Plants are DNA hoarders. Adhering to the maxim of never throwing anything out that might be useful later, they often duplicate their entire genome and hang on to the added genetic baggage. All those extra genes are then free to mutate and produce new physical traits, hastening the tempo of evolution.

A new study shows that such duplication events have been vitally important throughout the evolutionary history of gymnosperms, a diverse group of seed plants that includes pines, cypresses, sequoias, ginkgos, and cycads. Published on July 19, 2021, in Nature Plants, the research indicates that a genome duplication in the ancestor of modern gymnosperms might have directly contributed to the origin of the group over 350 million years ago. Subsequent duplications provided raw material for the evolution of innovative traits that enabled these plants to persist in dramatically changing ecosystems, laying the foundation for a recent resurgence over the last 20 million years.

This event at the start of their evolution created an opportunity for genes to evolve and create totally new functions that potentially helped gymnosperms transition to new habitats and aided in their ecological ascendance, said Gregory Stull, a recent doctoral graduate of the Florida Museum of Natural History and lead author of the study.

Some conifer and cycad species have highly restricted distributions and are at risk of going extinct due to climate change and habitat loss. These conifers, Araucaria goroensis, also known as the monkey puzzle tree, and Dacrydium araucarioides are unique to New Caledonia. Credit: Nicolas Anger

While having more than two sets of chromosomes a phenomenon called polyploidy is rare in animals, in plants it is commonplace. Most of the fruits and vegetables we eat, for example, are polyploids, often involving hybridization between two closely related species. Many plants, including wheat, peanuts, coffee, oats, and strawberries, benefit from having multiple divergent copies of DNA, which can lead to faster growth rates and an increase in size and weight.

Until now, however, its been unclear how polyploidy may have influenced the evolution of gymnosperms. Although they have some of the largest genomes in the plant kingdom, they have low chromosome numbers, which for decades prompted scientists to assume that polyploidy wasnt as prevalent or important in these plants.

Gymnosperm genetics are also complex. Their large genomes make them challenging to study, and much of their DNA consists of repeating sequences that dont code for anything.

Some gymnosperm traits, such as cone structure, color, shape and size, may have arisen as a result of multiple genome duplications. This is a female cone of the species Callitris pancheri. Credit: Nicolas Anger

What makes gymnosperm genomes complex is they seem to have a proclivity for accumulating lots of repetitive elements, said study co-author Douglas Soltis, Florida Museum curator and University of Florida distinguished professor. Things like ginkgos, cycads, pines and other conifers are loaded with all this repetitive stuff that has nothing to do with genome duplication.

However, a recent collaborative effort among plant biologists, including Soltis, to obtain massive numbers of genetic sequences from more than 1,000 plants has opened new doors for scientists attempting to piece together the long history of land plant evolution. Stull, now a postdoctoral researcher at the Chinese Academy of Sciences Kunming Institute of Botany, and his colleagues used a combination of these data and newly generated sequences to give gymnosperms another look.

By comparing the DNA of living gymnosperms, the researchers were able to peer back in time, uncovering evidence for multiple ancient genome duplication events that coincided with the origin of major groups.

Gymnosperms have undergone significant extinctions throughout their long history, making it difficult to decipher the exact nature of their relationships. But the genomes of all living gymnosperms share the signature of an ancient duplication in the distant past, more than 350 million years ago. More than 100 million years later, another duplication gave rise to the pine family, while a third led to the origin of podocarps, a group containing mostly trees and shrubs that today are primarily restricted to the Southern Hemisphere.

In each case, analyses revealed a strong link between duplicated DNA and the evolution of unique traits. While future studies are needed to determine exactly which traits arose due to polyploidy, possible candidates include the strange egglike roots of cycads that harbor nitrogen-fixing bacteria and the diverse cone structures found across modern conifers. Podocarp cones, for example, are highly modified and look deceptively like fruit, said Stull: Their cones are very fleshy, have various colors, and are dispersed by different animals.

Stull and his colleagues also wanted to know whether genome duplications influenced the rate at which new gymnosperm species evolved through time. But instead of a clear-cut pattern, they found a complex interplay of extinction and diversification amidst a backdrop of a significantly changing global climates.

Today, there are about 1,000 gymnosperm species, which may not seem like many when compared with the 300,000 or so species of flowering plants. But in their heyday, gymnosperms were much more diverse.

Gymnosperms were still thriving prior to the asteroid extinction event 66 million years ago, best known for the demise of dinosaurs. But the dramatic ecological changes brought about by the impact tipped the scales: After the dinosaurs disappeared, flowering plants quickly began outcompeting gymnosperm lineages, which suffered major bouts of extinction as a result. Some groups were snuffed out entirely, while others barely managed to survive to the present. The once-flourishing ginkgo family, for example, is today represented by a single living species.

But the results from this study indicate that at least some gymnosperm groups made a comeback starting around 20 million years ago, coinciding with Earths transition to a cooler, drier climate.

We see points in history where gymnosperms didnt just continue to decline, but they actually diversified in species numbers as well, which makes for a more dynamic picture of their evolutionary history, said co-author Pamela Soltis, Florida Museum curator and UF distinguished professor.

While some gymnosperms failed to cope with the dual specter of climate change and competition, others had an advantage in certain habitats due to the very traits that caused them to lose out in their ancient rivalry with flowering plants. Groups such as pines, spruces, firs and junipers got fresh starts.

In some respects, gymnosperms maybe arent that flexible, Pamela Soltis said. They kind of have to wait around until climate is more favorable in order for them to diversify.

In some environments, gymnosperms adapted to live at the extremes. In pine forests of southeastern North America, longleaf pines are adapted to frequent fires that incinerate their competition, and conifers dominate the boreal forests of the far north. But take away the fire or the cold, and flowering plants quickly start to encroach.

While gymnosperms are still in the process of diversifying, theyve been interrupted by human-made changes to the environment. Currently, more than 40% of gymnosperms are threatened by extinction due to the cumulative pressures of climate change and habitat loss. Future studies clarifying how their underlying genetics enabled them to persist to the present may give scientists a better framework for ensuring they survive well into the future.

Even though some conifer and cycad groups have diversified considerably over the past 20 million years, many species have highly restricted distributions and are at risk of extinction, Stull said. Efforts to reduce habitat loss are likely essential for conserving the many species currently threatened by extinction.

The researchers published their findings in Nature Plants.

Reference: Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms by Gregory W. Stull, Xiao-Jian Qu, Caroline Parins-Fukuchi, Ying-Ying Yang, Jun-Bo Yang, Zhi-Yun Yang, Yi Hu, Hong Ma, Pamela S. Soltis, Douglas E. Soltis, De-Zhu Li, Stephen A. Smith and Ting-Shuang Yi, 19 July 2021, Nature Plants.DOI: 10.1038/s41477-021-00964-4

Other co-authors of the study are Xiao-Jian Qu of Shandong Normal University; Caroline Parins-Fukuchi of the University of Chicago; Ying-Ying Yang, Jun-Bo Yang, Zhi-Yun Yang, De-Zhu Li and Ting-Shuang Yi of the Chinese Academy of Sciences; Yi Hu and Hong Ma of Pennsylvania State University; and Stephen Smith of the University of Michigan.

Funding for the research was provided by the Chinese Academy of Sciences, the National Natural Science Foundation of China, the Yunling International High-end Experts Program of Yunnan Province and the Natural Science Foundation of Shandong Province. Stull also received support from the CAS Presidents International Fellowship Initiative and the China Postdoctoral Science Foundations International Postdoctoral Exchange Program.

Continue reading here:
DNA Hoarders: Genetic Duplication Linked to the Origin and Evolution of Pine Trees and Their Relatives - SciTechDaily