Category Archives: Genetics

Alzheimer’s and Autism: Researchers Pinpoint Genetic Mutations Overlapping in Both Diseases – Being Patient

As the quest to understand the complexities of Alzheimers continues, researchers have now identified genetic mutations related to autism that may play a role in the neurodegenerative disease as well.

The study, out of Tel Aviv University, pinpointed thousands of genetic mutations in aging human brains that overlapped with mutations involved in autism and intellectual disability. They also found that many of these mutations occurred in the cell skeleton/transport system, a network of proteins that help organize cells.

We were surprised to find a significant overlap in Alzheimers genes undergoing mutations with genes that impact autism, intellectual disability and mechanisms associated with the cell skeleton/transport system health, Illana Gozes, lead author of the study, said in a news release. Importantly, the cell skeleton/transport system includes the protein Tau, one of the major proteins affected in Alzheimers disease, which form the toxic neurofibrillary tangles

Two decades ago, Gozes and the team at the laboratory discovered a protein known as ADNP. ADNP is mainly known for its connection to ADNP syndrome, a neurodevelopmental disorder that includes intellectual disability and autism spectrum disorder. But the team of researchers identified that ADNP also experiences mutations in the brains of people with Alzheimers.

Gozes built on that in the latest study, which aimed to create a paradigm shift in how people understand Alzheimers. That viewpoint focuses on how genetic alterations that are not inherited, known as mosaic somatic mutations, lead to brain pathology and disease.

The researchers hope the research will help lead to new therapeutic channels down the road.

We found in cell cultures that the ADNP-derived snippet, the drug candidate NAP, inhibited mutated-ADNP toxicity and enhanced the healthy function of Tau, Gozes said. We hope that new diagnostics and treatment modes will be developed based on our discoveries.

Genetics continues to be a large area of research around Alzheimers and dementia. Recently, researchers discovered that a genetic mutation known as APOE3ch delayed a womans high risk of developing Alzheimers by three decades.

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Alzheimer's and Autism: Researchers Pinpoint Genetic Mutations Overlapping in Both Diseases - Being Patient

Collection of genetic data leads to privacy concerns – The New Economy

A DNA test can reveal surprising facts about us certain genes make us more inclined to have dry earwax, for example, and others make us more likely to sneeze when we see a bright light. Some genes even result in people being more attractive targets for mosquitoes, so if youve ever felt personally singled out by the insect during the summer months, its not a cruel conspiracy its your DNA.

Innocuous facts like these were what DNA kits were used for finding out when they first became commercially available. However, as the tests have become more sophisticated, the companies behind them have shifted their marketing focus. Users of at-home DNA tests have been known to uncover deep-rooted facts about themselves, from discovering long-lost relatives to learning of their ancestors origins and their susceptibility to genetic diseases.

Finding out that you have a pre-existing health condition might not seem like the best idea for a Christmas present, but that hasnt stopped the test kits from enjoying a surge in popularity. MIT Technology Review estimates that by the start of 2019, more than 26 million people had taken an at-home ancestry test. The market is expected to be worth $45bn by 2024.

Nevertheless, despite the emerging industrys rampant growth, there have been mounting concerns that its practices could infringe on consumers rights. Whenever people fork out $100 to $200 for a DNA test, the hidden cost of that transaction is their personal data which, from then on, is held in the databases of a private company. Once these companies obtain genetic information, its very difficult for users to get it back.

By taking DNA tests at home, many have unwittingly stumbled upon long-kept family secrets. Some have seen their parents go through a bitter divorce after their test revealed they were actually conceived through an affair

Ignorance is blissLong before people were able to take DNA tests from the comfort of their own home, psychologists worried about their possible impact on peoples mental health. Ever since the Human Genome Project was started in 1990, many scholars have maintained that DNA tests should be used with caution, on the grounds that understanding ones own health risks could lead to anxiety or depression.

Conversely, a study by the Hastings Centre found that discovering an increased risk of developing Alzheimers disease did not make people more depressed or anxious. And in the event that people discover a particularly urgent health risk like a mutation of the BRCA1 or BRCA2 genes, which puts individuals at a high risk of developing cancer at a young age any adverse psychological effects are presumably worth it to obtain this life-saving information.

However, at-home DNA tests could still pose a risk to mental health, in part because they remove medical professionals from the equation. Adrian Mark Thorogood, Academic Associate at the Centre of Genomics and Policy, warned that this is far from best practice for receiving a DNA test result. Results should be communicated through a medical professional who can interpret the result in the individuals specific context, and offer a clear description of the tests limits, he told The New Economy.

Without a professionals assistance, users could be left alone to battle with a troubling revelation about their health. There is also a danger that without guidance, some people could misinterpret their test result, placing undue stress on their mental health.

There is another unpleasant discovery that people can make through a DNA test one they may be even less prepared for. By taking DNA tests at home, many have unwittingly stumbled upon long-kept family secrets. Some have seen their parents go through a bitter divorce after their test revealed they were actually conceived through an affair. Others have discovered they were conceived by rape and that their mother decided to never tell them. What began as a seemingly harmless urge to find out more about their heritage ends in psychological trauma and family breakdown.

Brianne Kirkpatrick, a genetics counsellor, is part of a growing sector of therapy specifically tailored towards helping people come to terms with receiving unexpected DNA results. One cant help but wonder whether her patients end up wishing theyd never taken the test at all.

I dont recall anyone saying they wish they could go back and not learn the truth, Kirkpatrick said. But I have had a number of people say to me they wish they had found out their shocking information from a person, rather than a computer.

While we might think wed prefer to suffer a DNA leak than a leak of our credit card details, genetic data has its own unique set of complications

The fact that virtually anyone can now find out their real parentage through a simple DNA test has wide-reaching repercussions for the accountability of paternity. Historically, men have always had a much greater ability to conceal their status as a parent, as they dont have to bear the child. The world of direct-to-consumer DNA testing blows this capacity for anonymity out of the water.

This is particularly problematic when it comes to sperm donation. Anonymity is a key selling point for many potential donors, but now all their future biological offspring has to do is swab the inside of their cheek to completely compromise that anonymity. Research suggests that we could see a drop in donor rates as a result. A 2016 study in the Journal of Law and the Biosciences found that 29 percent of potential donors would actually refuse to donate if their name was put on a registry.

The wave of parental discoveries made through direct-to-consumer DNA tests raises questions about where the responsibility of the seller sits in all this. Most health professionals recommend that individuals seek out genetics counselling once they receive DNA results. Some, like Invitae, offer counselling services but arent direct-to-consumer companies. Many of those that are including 23andMe do not offer such a service. It could be argued that this shows a certain disregard for the consequences of using their product. Unfortunately, irresponsible decisions like this have tended to characterise the industrys path to success.

Genetic Wild WestIn September 2019, 17 former employees from the Boston-based genetic testing company Orig3n accused the firm of giving consumers inaccurate results. Allegedly, if a customer took the same test twice, their results could be extremely different each time. A former lab technician produced a leaked report to Bloomberg Businessweek that revealed 407 errors like this hadoccurred over a period of three months.

Part of Orig3ns USP was that it offered advice supposedly calculated based on a consumers genetic profile. Former employees have cast doubt over the companys modus operandi by claiming that the advice they gave was in fact routinely lifted from the internet. The advice given ranged from the technically correct but uninspired to the broadly unhelpful such as telling people to eat more kale and the utterly bogus, like advising clients to eat more sugar to eliminate stretch marks.

Although Orig3n is a relatively small player in the sector, news of this scam nonetheless illustrates how little protection consumers have in this nascent market. Analysts say we are currently witnessing a Wild West period in the consumer genetics space thanks to a lack of regulation, raising concerns over whether we can trust these companies with our genetic data. While we might think wed prefer to suffer a DNA leak than a leak of our credit card details, genetic data has its own unique set of complications.

In the United States, if my social security number is stolen, that is difficult, but not impossible, to get frozen, changed, etc, said Natalie Ram, an associate professor at the University of Maryland Francis King Carey School of Law and a specialist in bioethics and criminal justice. But theres literally no way to change your genetic code.

Genetics platforms like 23andMe, AncestryDNA and FamilyTreeDNA are now sitting on a goldmine of very personal data. In 2013, a 23andMe board member told Fast Company that it wanted to become the Google of personalised healthcare. If this statement makes anything clear, its that the company wasnt planning on making its millions simply by selling DNA test kits: its mission was always to amass significant amounts of data on its users, which it could then monetise.

There is a wide range of reasons why companies might want to buy genetic data. Perhaps the most benign is medical research, which genetics platforms allow users to opt in or out of. But other companies might use your genetic data to better sell you products or, conversely, deny them to you for instance, one sector that would see a clear monetary value in obtaining genetic data is insurance. In the US, the Genetic Information Nondiscrimination Act of 2008 prevents employers and health insurers from using a persons genetic information when making decisions about hiring, firing or raising rates. However, this does not include life insurance or short or long-term disability insurance.

At first glance, it seems as if theres a simple solution: if users are concerned about these risks, they should just choose for their data to be kept anonymous. However, choosing this option is not as foolproof as it once was. As long ago as 2009, researchers demonstrated that they could correctly identify between 40 and 60 percent of all participants in supposedly anonymous DNA databases by comparing large sets of that data with public datasets from censuses or voter lists. Since that experiment, DNA databases have grown massively.

With access to four to five million DNA profiles, upwards of 90 percent of Americans of European descent will be identifiable, said Ram. Its verging on a comprehensive DNA database that no US state or jurisdiction has suggested would be appropriate.

Shaping the lawWith comforting statements like your privacy is very important to us (ancestry.co.uk) and we wont share your DNA (familytreedna.com) emblazoned on their websites, some genetics platforms seem to be making privacy their number one priority. In the US, 23andMe and Ancestry are part of the Coalition for Genetic Data Protection, which lobbies for privacy protection in the DNA space. However, while the coalition advocates genetic data privacy in a specific context, it argues for a one-size-fits-all policy concerning all data. By comparison, the EUs General Data Protection Regulation regards genetic information as personal data, which makes DNA unique from other kinds of data.

There is a fundamental legal problem with boxing genetic data in with all other varieties, including the data that social media websites collect about us. In most cases, what a person does on the internet implicates them alone genetic data is different. We share our DNA with members of our family, which means that sharing it without their consent can be problematic.

Even if I can consent to using my DNA to identify me, that should not extend to my ability to consent to using my DNA to identify my relatives, said Ram. The reason I think thats a really critical distinction is because genetic relatedness is almost always involuntarily foisted upon us. So we dont choose our parents, we dont choose how many siblings we have. Its a product of biology, not a product of choice.

The legal issues surrounding genetic relatedness were put to the test in 2018 when police discovered the true identity of the Golden State Killer, who terrorised California in the 1970s and 1980s in a homicidal spree. Law enforcement officials were able to convict him only because they had succeeded in connecting the DNA of the suspect with that of a family relative on GEDmatch, a genetic database in the public domain. Across the US and around the world, people celebrated the arrest of a notorious criminal. The only problem was that the means of capturing him was not necessarily legal.

Prior to the case, GEDmatchs site policy made no explicit reference to the potential use of consumers data by law enforcement. However, the company defended itself by saying that users should have assumed it could be put to that use.

While the database was created for genealogical research, it is important that GEDmatch participants understand the possible uses of their DNA, including identification of relatives that have committed crimes or were victims of crimes, said GEDmatch operator Curtis Rogers in a statement.

Some genes even result in people being more attractive targets for mosquitoes, so if youve ever felt personally singled out by the insect during the summer months, its not a cruel conspiracy its your DNA

However, privacy advocates like Ram argue that users consent for law enforcement to look at their data should not have been assumed. At least from a constitutional perspective in the United States, individuals ought to be recognised to have whats called an expectation of privacy in their genetic data, even if they use one of these services, she told The New Economy.

After the case, genetics platforms updated their policies to clarify their position on law enforcements use of peoples data. Interestingly, they took very different stances. While 23andMe and Ancestry said they would not allow law enforcement to search through their genetic genealogy databases, FamilyTreeDNA updated its policy to say it would give up data to officials, but only in the investigation of violent crimes. Users didnt know it at the time, but FamilyTreeDNAs policy update was already too little too late: in January 2019, it was revealed that the company had been secretly working with the FBI for nearly a year to solve serious crimes, without informing its users.

The Golden State Killer case exposed how little protection consumers really had in the direct-to-consumer genetics market. It showed that genetics platforms were capable of suddenly changing or contradicting their own policies and even, in the case of FamilyTreeDNA, betraying the trust of consumers.

Some might argue that this infringement on genetic privacy is simply the price we must pay to catch dangerous criminals. Of course, without the use of a genealogy database, the Golden State Killer may never have been caught. But the fact that genetic data can be harnessed to solve very serious crimes should not justify law enforcements unbridled access to such databases. Abuses of power do happen and, in the context of direct-to-consumer DNA tests, they already have: in 2018, for example, Canadian immigration officials compelled a man to take a DNA test and upload his results to FamilyTreeDNAs website. They then used the website to find and contact some of his relatives in the UK to gather more evidence in order to deport him.

Todays consumers are continually adjusting to shrinking levels of privacy. From the introduction of video surveillance and the mapping of residential areas on Google Earth to the revelation that Facebook harvests vast amounts of user data, we have seen the public react in the same way again and again: there is an initial public outcry, and then consumers simply adjust to the new level of diminished privacy. Our response to the rise of genetics platforms risks the issue being consigned to the same fate.

It is up to regulators to protect individuals right to privacy. While our genetic data may be something of a genie out of the bottle, that should not give the companies that collect it free rein over who sees it and what they choose to do with it.

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Collection of genetic data leads to privacy concerns - The New Economy

Rapid genetic test traces spread of fungus that kills frogs, reveals new strain in Southeast Asia – Mongabay.com

Protecting frogs against the invisible killer called chytrid was never going to be easy. The fungus has already wiped out more species than any other known disease. But a recent study of the worldwide spread of the fungus shows that the task will be even harder than scientists expected.

The study is the first to use skin swabs from amphibians to identify the major strains of the fungus. Researchers found regions where strains could combine into deadly hybrids. They also found a previously unknown variant in Southeast Asia, which has not yet spread globally.

The findings, published Sept. 23 in the Proceedings of the National Academy of Sciences, show that ecologists will need to track these distinct fungal variants to protect frogs more fully. Mutations in the fungus make it a moving target in much the same way as the ever-shifting influenza virus.

There [are] amazing, last vestiges of really diverse amphibian communities, said environmental scientist Erica Bree Rosenblum of the University of California, Berkeley, senior author of the study. If we can protect them from having a really deadly chytrid strain, that would be great.

Chytrid infects the thin, moist skin frogs use to absorb water and balance their levels of sodium, chloride and potassium. An infected frog, unable to maintain a steady heartbeat, will die of a heart attack. The fungus then releases spores into the water to infect the next frog. This deadly cycle is responsible for the decline of more than 500 amphibian species. About 90 species have gone extinct in the past 50 years, ecologists believe, including Australias Mount Glorious torrent frog (Taudactylus diurnus), last seen in 1979.

Some chytrid variants are deadlier than others. However, most genetic tests only reveal whether any fungus is present. The current way to identify the lineage of a fungus is to sequence its entire genome, a time-consuming step.

Rosenblums team, including first author Allison Byrne at UC Berkeley, devised a less laborious approach: a genetic test that works on small amounts of low-quality DNA. They tested 222 frog skin swabs from six continents and 24 countries. The massive international collaboration mobilized 30 co-authors.

The tests uncovered a new variant in China, Indonesia and the Philippines, which fits scientists understanding that the disease probably started in Asia. Researchers also found variants in unexpected places. For example, a lineage previously reported in Europe and Africa also turned up on frogs in Latin America.

This paper has been a long time coming, said evolutionary biologist Timothy James of the University of Michigan, who was not involved in the study. It validates some hypotheses and shows the way forward.

Many regions hosted multiple strains of the fungus. In some cases, frogs with different variants lived within meters of each other. That proximity worries Rosenblum. Strains could form deadlier hybrids in places like Brazil, where American bullfrogs (Lithobates catesbeianus) are farmed as pets and food. The new skin swab genetic test could allow officials to screen shipments of frogs before they go overseas, Rosenblum has proposed.

The teams approach could also help scientists learn how chytrid became so deadly to begin with. Museum samples have shown that the fungus existed on frogs collected in the early 1900s. However, mass die-offs didnt begin until the 1970s. Museum archives, examined with the new test, could identify what changed: from tweaks in the genetics of the fungus to the rise of international amphibian trade and global travel.

The effects of globalization for disease transmission around the world are so palpable, Rosenblum said. If were worried about moving diseases around the world for our own species, then we should also be worried about moving diseases around the world for other species.

Citation

Byrne, A. Q., et al. (2019). Cryptic diversity of a widespread global pathogen reveals expanded threats to amphibian conservation.Proceedings of the National Academy of Sciences,116(41), 20382-20387. https://doi.org/10.1073/pnas.1908289116

Jonathan Wosen (@JonathanWosen) is a graduate student in the Science Communication Program at the University of California, Santa Cruz. Other Mongabay stories produced by UCSC students can be found at https://news.mongabay.com/list/ucsc/

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Rapid genetic test traces spread of fungus that kills frogs, reveals new strain in Southeast Asia - Mongabay.com

Fargo woman credits her 108 years to genetics and healthy living – INFORUM

FARGO At Bethany Retirement Living on South University Drive, 108-year-old Helene Sandvig walked to her own birthday party on Monday, Nov. 25.

Sandvig lives independently, walks on her own and has sharp memories about her life on a farm near Leonard, N.D.

Many have asked the former country school teacher, Sunday school superintendent and 4-H Club leader what her secret is to living a long life.

She has a very practical explanation.

"Everyone asks me and I say it is in the genes," Sandvig said. "My folks lived to be into their 90s and two of my brothers lived over 90. But of course, we worked hard and kept healthy and busy."

Since Sandvig has no immediate family, Bethany organized the party with Sandvig's friends and old neighbors.

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Fargo woman credits her 108 years to genetics and healthy living - INFORUM

Representatives of Fulgent Genetics to Participate in the Piper Jaffray 31st Annual Healthcare Conference – Yahoo Finance

TEMPLE CITY, Calif., Nov. 25, 2019 (GLOBE NEWSWIRE) -- Fulgent Genetics, Inc. (FLGT) (Fulgent Genetics or the company), a provider of comprehensive genetic testing and Next Generation Sequencing (NGS) solutions, today announced that its Chairman and Chief Executive Officer Ming Hsieh, Chief Financial Officer Paul Kim, and Vice President of Commercial Operations Brandon Perthuis are scheduled to participate in the 31st Annual Piper Jaffray Healthcare Conference on Wednesday, December 4, 2019 at the Lotte New York Palace Hotel in New York, New York.

These representatives of the company will participate in a question-and-answer session with the host analyst beginning at approximately 12:30 p.m. ET.

A live webcast of the question and answer session will be available on the Investor Relations section of the Fulgent Genetics website at ir.fulgentgenetics.com. A replay of the webcast will be accessible at ir.fulgentgenetics.com beginning approximately one hour following the completion of the event.

About Fulgent Genetics

Fulgent Genetics is a technology company with a focus on offering comprehensive genetic testing to provide physicians with clinically actionable diagnostic information they can use to improve the quality of patient care. The company has developed a proprietary technology platform that allows it to offer a broad and flexible test menu and continually expand and improve its proprietary genetic reference library, while maintaining accessible pricing, high accuracy and competitive turnaround times. The company believes its test menu offers more genes for testing than its competitors in todays market, which enables it to provide expansive options for test customization and clinically actionable results.

Investor Relations Contacts:The Blueshirt GroupNicole Borsje, 415-217-2633, nborsje@blueshirtgroup.com

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Representatives of Fulgent Genetics to Participate in the Piper Jaffray 31st Annual Healthcare Conference - Yahoo Finance

The Secret To Longevity Could Be Genetics – Medical Daily

Japan has the worlds oldest population, with 28 percent of all citizens comprising of elderly people above the age of 65. The secret to longevity lies not only in their healthy diet and lifestyle choices, but is influenced by a specific set of genes. Yes, the reason the country has 146 people over the age of 110 (referredto as supercentenarians) is simply good genes. This factor enabled them to stave off cancer and other deadly diseases for more than a century.

A new study conducted by the RIKEN Center for Integrative Medical Science (IMS) and Keio University School of Medicine in Japan sought to understand the genetics behind aging in supercentenarians by analyzing single-cell RNA sequencing.In the paperthat was published in the journal Proceedings of the National Academy of Sciences, the scientists investigated the immune cells of seven supercentenarians and made comparisons to the five subjects with ages between 50 and 80 years.

Researchers looked at 41,208 cells altogether from the elders with ages over 110, and 19,994 cells in the control group. The two cells part of the bodys immune response, which are B-cells and T-cells, were studied.It was found that B-cells had a lower count in the supercentenarians, while T-cells were at the same number in both groups.

However, the major finding was that supercentenarians had more of a particular subset of T-cells, namely CD4 T-cells that are capable of killing harmful cells, which wasonly possible by cytotoxic CD8 T-cells until then. In fact, 80 percent of the T-cells were composed of CD4 markers, whereas 10 to 20 percent of the T-cells had the marker in people of ages between 50 and 80.

The secret to aging may lie in your genes. Photo courtesy of Pexels

Since T-cells with CD8 markers are known to be cytotoxic, this means the CD4 markershad changed to acquire the new function, as per the researchers. This was not the case with the relatively younger subjects, this was the single most unique genetic characteristic of supercentenarians.

"This research shows how single-cell transcription analysis can help us to understand how individuals are more or less susceptible to diseases. CD4-positive cells generally work by generating cytokines, while CD8-positive cells are cytotoxic, and it may be that the combination of these two features allows these individuals to be especially healthy," Piero Carninci, IMS Deputy Director, said.

To understand the unusual phenomenon better, the researchers further studied the cells of two older participants, only to find another interesting fact about the CD4 T-cells: They had descended and multiplied from a single ancestral cell.

"We believe that this type of cells, which are relatively uncommon in most individuals, even young, are useful for fighting against established tumors, and could be important for immunosurveillance. This is exciting as it has given us new insights into how people who live very long lives are able to protect themselves from conditions such as infections and cancer," Carninci added.

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The Secret To Longevity Could Be Genetics - Medical Daily

Some of the top DNA kits are deeply discounted for Black Friday – here’s a break down of each one – Business Insider India

$99.99 (Originally $199) [You save $99.01]

The 23andMe kit is one of the most in-depth at-home DNA tests you can take. Not only will it break down your ancestry, but it will also discover your genetic health risks for diseases like Parkinson's or Alzheimer's, carrier traits for diseases like Cystic Fibrosis and Sickle Cell, report on your wellness with details like sleep patterns and lactose intolerance, and other genetic traits. If you're only interested in learning your ancestry you can buy the genetics kit for $20 off.

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Some of the top DNA kits are deeply discounted for Black Friday - here's a break down of each one - Business Insider India

This Mom Is Buying Mutant Mice From China To Find A Cure For Her Sons Rare Genetic Disease – BuzzFeed News

When Amber Freed first told doctors her baby boy wasnt able to move his hands, they said that wasnt possible.

Freed had given birth to twins in March 2017. While her baby girl, Riley, squirmed and babbled and crawled through the first year of her life, her fraternal twin, Maxwell, was different. He didnt crawl or babble like Riley did. I would fill out their baby books each month, and Riley had met all of these milestones. Maxwell didnt reach one, she said. Most alarmingly, however, Freed noticed that he never moved his hands.

She knew the news was going to be bad when they sent her to the sad room at the hospital, a featureless conference space filled with grim-faced doctors, to hear the diagnosis.

You take your baby to the doctor and you say, He cant move his hands. And they look at you and they say, Of course he can, said Freed.

Then they look for themselves, and you can see from the look on their faces that they have never seen anything like this.

On June 14, 2018, at the Children's Hospital Colorado in Denver, Maxwell was diagnosed with a genetic disease called SLC6A1. The diagnosis explained why the infant hadnt moved his hands or learned how to speak for the first year of his life, while Riley was thriving. But it didnt explain much else: All the doctors who diagnosed Maxwell knew about the genetic disease came from a single five-page study published in 2014, the year of its discovery. It was too rare to even have a name, she was told, so the doctors just called it by the name of the affected gene: SLC6A1.

Now her 2-year-old son is at the center of a multimillion-dollar race against time, one thats come to include genetics researchers whom Freed personally recruited, paid for by $1 million that Freed and her husband, Mark, have raised themselves. At the center of their research will be specially crafted mutant mice that Freed paid scientists in China to genetically alter to have the same disease as Maxwell. The four mice are scheduled to arrive stateside next week, but Freed said shes prepared to smuggle them into the US disguised as pets if there are any problems.

In total, Amber and Mark will need to raise as much as $7 million to test a genetic treatment for their child. And unless they can find and fund a cure, SLC6A1 will condemn Maxwell to severe epileptic seizures, most likely starting before he turns 3. The seizures may trigger developmental disabilities for a lifetime, often accompanied by aggressive behavior, hand flapping, and difficulty speaking.

And the Freeds will have to do it largely alone there are only an estimated 100 other people diagnosed with SLC6A1 in the world. This is the rarest of the rare diseases, pediatric geneticist Austin Larson of the Children's Hospital Colorado told BuzzFeed News.

SLC6A1 is just one of thousands of untreatable rare diseases, and the perilous path it has set up for Freed, half science quarterback and half research fundraiser, is one that few parents can follow. My dream is to create a playbook of how I did this for those that come after me, said Freed. I never want there to be another family that has suffered like this.

You can think of SLC6A1 as a vacuum cleaner in the brain, genetic counselor Katherine Helbig of the Childrens Hospital of Philadelphia, told BuzzFeed News. Helbig will speak at the first conference on the gene at the American Epilepsy Society meeting in Baltimore on Dec. 5, an effort organized by Freed.

The protein made by the gene acts as a stop sign to message-carrying chemicals in the brain, halting them by vacuuming them up once they reach their destination brain cell, Helbig explained.

When one of the two copies of the SLC6A1 gene in every brain cell is damaged, like in Maxwells case, too little of its protein is available to perform its vacuuming duties, leading to miscommunication between cells, developmental disorders, autism-like symptoms, and, often, severe epileptic seizures.

Maxwell is about the age when epileptic seizures typically start in kids with the genetic disease, said Helbig, adding, There probably are many more children out there who have it, but they just havent had the right test to find it. At least 100 similar genetic defects cause similar kinds of epilepsy, afflicting about 1 in 2,000 kids, she said.

I was the one who presented this diagnosis to Amber, said Larson of the Children's Hospital Colorado. There was no medicine or diet or any other treatment for SLC6A1. It wasnt an easy conversation. Most of the time when we present a diagnosis for a genetic condition, there is not a specific treatment available.

At that moment, it was just vividly clear that the only option was for me to create our own miracle, said Freed. Nobody else was going to help.

Half the battle with a rare genetic disease is getting researchers interested, said Helbig.

At that moment, it was just vividly clear that the only option was for me to create our own miracle. Nobody else was going to help.

So that is what Freed set out to do. She quit her job as a financial analyst and started making phone calls to scientists, calling 300 labs in the first three months. For those who didnt respond, she sent them snacks via Uber Eats.

Her search, and a rapid-fire education on genetic diseases, led her to conclude the best hope for helping Maxwell was an experimental technique called gene therapy.

All the roads zeroed in on one scientist: Steven Gray of the University of Texas Southwestern Medical Center in Dallas. In 2018, a team headed by Gray reported the first human experiments of gene transfer by spinal injection, conducted in 5 to 10 children with mutations in a gene called GAN that causes swelling in brain cells.

The GAN gene transfer in that experiment, first tested in mice, attached a corrected version of the damaged gene to a harmless virus. Viruses reproduce by infecting cells and hijacking their DNA machinery to reproduce their own genes, making more viruses. The gene therapy virus in turn leaves behind a corrected gene in the DNA of cells they infect. Injected into the spinal cord, Grays virus can travel straight to the brain, leaving behind the corrected gene after the virus has run its course.

I gave him my 30-second equity analyst pitch. I told him why Maxwell was a good patient, that we would raise $4 million to $7 million, and quarterback every step of the research, she said. And it worked. He agreed to make it a priority if we could raise the money.

The SLC6A1 researchers with the Freeds at a science meeting. From left: Terry Jo Bichell, Frances Shaffo, Amber Freed, Katty Kang, and Mark Freed.

Less than a month after meeting Gray, Freed contacted a lab at Tongji University in Shanghai that was also researching SLC6A1. The lab agreed to develop a mouse with Maxwells specific mutation for less than $50,000, using a gene modification technology called CRISPR that has revolutionized genetic engineering in the lab. CRISPR mice are much more expensive in the US, and this lab had experience with the gene, said Freed.

By July of this year, an experiment with a gene therapy virus that corrects SLC6A1 was tested on normal lab mice, which showed no sign of a toxic response, an encouraging sign. And by September, a line of CRISPR mice with Maxwells exact genetic mutation had been created at Tongji University.

It is the literal mouse version of him, said Freed. Testing a therapy in this mouse is as close as science can get to testing in my son directly.

To pay for all this, Maxwells family started fundraising last November and organized the first medical symposium on SLC6A1 in New Orleans that same month. They opened a GoFundMe account, which has raised $600,000, and held 35 fundraisers, which raised an additional $400,000 by October. In one charity competition, Larson from the Colorado Childrens Hospital, who diagnosed Maxwell, personally helped her raise $75,000.

It is the literal mouse version of him. Testing a therapy in this mouse is as close as science can get to testing in my son directly.

That money is helping to pay for the next step getting the CRISPR mice to Grays lab to test the SLC6A1-correcting virus on them. But its not as simple as putting the mice in a box and shipping them by mail. The mice will be transferred through a lab at Vanderbilt University headed by Katty Kang, an expert on the neurotransmitter disrupted by Maxwells mutation.

Amber is helping us to advance science, and everyone is making this a priority because of the young lives at stake not just Maxwell, but other children this could help, Kang told BuzzFeed News.

Once the four mice arrive, they will spend several weeks in quarantine, be tested to make sure they have Maxwells specific point mutation in the SLC6A1 gene, and breed with normal lab mice to produce generations of mixed-inheritance mice to serve as controls in future experiments. The mutant mice will be closely monitored before they head to UT Southwestern to make sure that they demonstrate the same problems and genetics as human patients with SLC6A1 and can therefore be used in any future clinical trials of gene therapy.

Right now at UT Southwestern, results from a safety test of the gene therapy virus conducted by Grays lab on young, normal lab mice is awaiting publication. If that works out, once the Chinese mice are sent over, they will also receive the gene-correcting virus. His team will see if their symptoms improve and to what extent their brain cells accept the corrected gene.

Maxwell's brain cells seen through a microscope (left), and a sample of his cells in a petri dish.

And then, Freed just needs another $5.5 million. Half a million dollars will go to test the virus in a second SLC6A1 animal model, likely a rat, as another safety step. Two million dollars will go toward creating more of the gene-correcting virus for a human safety study if that proves to be safe. And finally, if all that works out, $3 million will be needed to conduct the experiment on Maxwell and other children next year, following the path of the GAN clinical trial led by Gray.

Its a really horrible realization that the only thing standing in the way of a cure for your 2-year-old is money, said Freed.

Freed acknowledges that she has only been able to pursue a cure for Maxwell because her family has the resources to do so which she would never have had growing up in small towns in Texas, Montana, and Colorado in a poor family affected by alcoholism. I grew up visiting my parents in rehab and knew what to say to put a family member on a 72-hour psychiatric hold by age 12, she said. She dug herself out to build a career in finance, and hoped her kids would never have to experience the struggles she did growing up.

Even so, the fight hasnt been easy on them or on Maxwells sister, Riley.

Freed worries her daughter is growing up in doctors' waiting rooms, waiting on treatments for her brother to end. Maxwells disease has progressed, causing him to constantly clench his fingers, and sometimes pull his sisters hair. His 3-year-old sister will gently remind him, Soft hands, Maxie.

Families like the Freeds are at the forefront of efforts to turn diagnoses of rare genetic ailments, which often used to be the stopping point for medicine, into treatments. A similar case saw the family of a 3-year-old girl, Mila Makovec, raise $3 million for gene therapy to cure her Batten disease, a deadly genetic brain disease that affects 2 to 4 of every 100,000 children born in the US.

In a New England Journal of Medicine editorial on that case published in October, FDA officials questioned how high the agency should set the safety bar for such treatments, meant for severe diseases affecting so few people. In these cases, parents are often collaborators in developing treatments, and might not want to stop efforts that come with high risks. Even in rapidly progressing, fatal illnesses, precipitating severe complications or death is not acceptable, so what is the minimum assurance of safety that is needed? wrote senior FDA officials Janet Woodcock and Peter Marks.

This is way beyond what anyone expects of families.

Finally, Woodcock and Marks wrote, finding sustainable funding for such interventions may prove challenging, because the cost of production can be quite substantial, particularly for gene therapies.

In our era of financial inequality, the specter of wealthy parents buying custom genetic treatments for their childrens ailments while other parents desperately resort to GoFundMe accounts, or else do nothing looms as a possibility.

This is way beyond what anyone expects of families, said Larson. The pathway has been opened up by the brave new world of improved genetic diagnoses, and the coming of age of rapid genetic engineering tools like CRISPR.

But only 20 years ago, an experimental gene therapy that relied on a harmless virus killed an 18-year-old volunteer, Jesse Gelsinger, in a research misconduct case that brought gene therapy to a standstill. Now more than 2,500 gene therapy clinical trials have been conducted, and more than 370 are underway. The human genome was not sequenced until 2000; today, mapping an entire human gene map costs around $700. In this new era, customized treatments for rare genetic diseases like Maxwells are suddenly possible.

What I hope is that we are paving the way for other parents to help their children, said Freed.

Families of children with rare genetic diseases are also working together to make treatments like the one Freed is spearheading possible, said Larson.

They support each other and work together, he said. The best example might be the families of children with cystic fibrosis, who through the Cystic Fibrosis Foundation and the discovery of the gene responsible for the disease in 1989 have pushed for the discovery of new drug treatments. In October, the FDA approved a breakthrough pharmaceutical that could treat 90% of cases.

It is easier working with FDA on this kind of approach rather than starting from scratch, Gray told BuzzFeed News by email. After all, he said, its easier to follow a path that youve already walked down.

Similarly, Freed hopes the SLC6A1 Connect advocacy group she started can lead to similar treatments for other children with genetic epilepsies caused by the gene.

I dont think any parent should be expected to single-handedly cure his or her childs rare disease, said Helbig. Amber is a very tenacious and persistent person, and she will fight tooth and nail for her kids. But a lot of people dont have the resources and they shouldnt have to.

Helbig says that cautious optimism is appropriate on the chances of research yielding a genetic therapy for children like Maxwell. For SLC6A1, its really too early to say whether this is going to work.

But if it works, it might lead many more parents to get genetic tests for children that will reveal undiagnosed problems, she said. Many doctors discourage extensive genetic tests, thinking they wont find anything helpful. In the absence of known treatments, insurers are also reluctant to pay for such tests, discouraging all but the most fortunate and resourceful parents. Even for them, there are no guarantees.

The other tough reality is the possibility this treatment wont be completed in time to help Maxwell, said Freed. I love him with every ounce of my being, and I want him to know that I did everything humanly possible to change his outcome.

Originally posted here:
This Mom Is Buying Mutant Mice From China To Find A Cure For Her Sons Rare Genetic Disease - BuzzFeed News

The Genetic Link Between Asthma and Mental Health – Pulmonology Advisor

Asthmahas long been associated with lower quality of life as a result of reducedactivity and increased psychological stress.1 Indeed, any identifiedlinks between asthma and mental health have primarily been unidirectional, withasthma leading to mental illness. However, recent studies have revealed geneticlinks between asthma and mental health.

Research suggests that people with asthma are more likely to develop mental health problems compared with the general population. In a study conducted with school children, the prevalence of diagnosed mental health conditions among those with asthma was 8.2%, which was nearly double the prevalence among those without asthma (4.8%).2 Another study comprising adults showed that mood disorders were strongly associated with allergic asthma, late-onset asthma, and infection-based asthma.3 In addition, researchers discovered that mental health care services were more likely to be used by people after a diagnosis of asthma.4

Morestudies are underway to investigate the bidirectional connection between asthmaand mental health. One study has linked asthma severity to lifetime and currentanxiety, with asthma preceding anxiety in 48% of the patients and anxietypreceding asthma in 52% of the patients.5

Thereis growing evidence for the involvement of genetics in this asthma-mentalhealth connection. A Swedish study that identified self-report associationsbetween asthma and major depressive disorder (MDD), anxiety, and neuroticismalso found genetic correlations between asthma and MDD, but not between asthmaand anxiety or neuroticism.6

Anotherstudy, a large-scale genome-wide cross trait analysis, has shown a strongassociation between asthma and 3 mental disorders: attention-deficit/hyperactivitydisorder (ADHD), anxiety disorder, and MDD.7 A total of 7 loci werefound to be jointly associated with asthma and ADHD; 1 loci with asthma andanxiety disorder; and 10 loci with asthma and MDD.

Accordingto Dr Zhaozhong Zhu, a lead researcher, Mendelianrandomization a method of using measured variation in genes of known function was used to inferputative causal relationshipsbetween asthma and mental health disorders in both directions, with our resultssuggesting that ADHD and MDD might increase the risk for asthma. Dr Zhu makesit clear that the mechanismof the association is unknown. Thecausal relationship found in the study is only based on genetic variables, heexplains. The epidemiologic association includes 2 key components: genetics(ie, genes and biological mechanisms) and environment (ie, social factors,exposure to certain conditions [asthma], and medication use).

The study findings indicate geneticcausality in the direction of mental illness causing asthma. However, theenvironmental causality is in the reverse direction and outweighs the geneticcausality; thus, the overall epidemiologic causality is in the direction ofasthma causing mental health disorders.

Compared with other mentaldisorders, depression appears to have the strongest link to asthma. In additionto the 10 loci found by Dr Zhu and his team, a single-nucleotide polymorphism(SNP) known as rs4672619, located on the Erb-B2 receptor tyrosine kinase 4gene, has been implicated in the comorbidity of depression and asthma.8The researchers who discovered the SNP evaluated the relationship between thedepressive status of the individuals and the rs4672619 genotypes on asthmasymptom severity. In childhood asthmatics, severe depression was related toless severe asthma symptoms, while in those with heterozygous and homozygousvariant alleles, severe depression was related to more severe asthma symptoms.

In elderly patients with asthma, thereverse was true. Those with the homozygous reference allele had a positivecorrelation between depression and asthma symptom severity, while a negativecorrelation was seen in those with heterozygous and homozygous variant alleles.Further studies on the relationship between the conditions could lead to thedevelopment of personalized therapies for the simultaneous treatment of bothconditions.

Few studies have established thegenetic link between asthma and anxiety. A Chinese investigation demonstratedthe effect of interactions between serotonin transporter (5-HTT), brain-derivedneurotrophic factor (BDNF), and the neuropeptide S receptor 1 gene, NPSR1-AS1 polymorphisms on anxiety and depression.9Interactions between 5-HTT (LL alleles) and BDNF (A+ allele) led to anincreased anxiety score, while interactions between BDNF (A+, GG) and NPSR1(AA, T+) increased the depression score.

While the genetic link betweenasthma and ADHD was strongly revealed in Dr Zhus study, most other studieshave been anecdotal. A large Swedish study found a significant associationbetween asthma and ADHD, even after removing possible confounding variables.10It has been hypothesized that because asthma and ADHD both have large geneticcomponents, people who are genetically susceptible to one condition may besusceptible to the other.11

Studying genetic variants raises thequestion of whether any genetic links have cross-cultural implications. Whilethe participants in Dr Zhus research were mainly European, Dr Zhu expectsthat, Asthma and mental health disorders should be genetically similar, butnot the same across major populations, such as African American, Hispanic, orAsian. He points out that one of the shared genetic loci between asthma andMDD, the human leukocyte antigen region on chromosome 6, has a pervasivegenetic effect in many diverse populations.

Currently, corticosteroids areconsidered the most effective long-term treatment for asthma. However, chroniccorticosteroid use has been associated with psychosis, depression, anxiety, andmania in people with asthma.12,13 Psychological treatments are being exploredas alternative interventions for asthma and while no psychotherapy has beenscientifically proven to improve asthma and comorbid mental illness, there hasbeen an increased interest in the use of cognitive behavioral therapy.14,15

Understanding the geneticassociation between asthma and mental health creates an opportunity for thedevelopment of more effective drugs and therapeutic approaches that could treatasthma and associated mental health disorders together. In Dr Zhus study, functionalanalysis revealed that the identified variants regulated gene expression intissues of various body systems, including the respiratory and immune system.Thus, further understanding of these variants may lead to treatments thataddress the respiratory and immune system problems often seen in people asthma.

According to Dr Zhu, In the short term,we aim to inform the general population that mental health disorders can haveshared genetic factors with asthma. Therefore, controlling environmentalfactors, such as eating healthy, enjoying a happy life, and being careful withthe potential adverse effects of medication, will help to prevent asthma andmental health disorders. In the long term, with more mechanistic studies, wehope to provide direction in the development of drugs for preventing andtreating both conditions at the same time.

References

1. American Academy of Allergy Asthma & Immunology. Increased mental health care use in adults after asthma diagnosis. http://www.aaaai.org/global/latest-research-summaries/New-Research-from-JACI-In-Practice/mental-health. April 7,2017. Accessed November 5, 2019.

2. Lawson J, Rennie D, Dyck R, Cockcroft D, Afanasieva A. The relationship between childhood asthma and mental health conditions.Eur Respir J. 2017;50(suppl 61):PA595.

3. Labor M, Labor S, Juri I, Fijako V, Grle S, Plavec D. Mood disorders in adult asthma phenotypes.J Asthma. 2017;55(1):57-65.

4. To T, Ryckman K, Zhu J, et al. Mental Health Services Claims and Adult Onset Asthma in Ontario, Canada.J Allergy Clin Immunol Pract. 2017;5(5):1388-1393.e3.

5. Del Giacco S, Cappai A, Gambula L, et al. The asthma-anxiety connection.Respir Med. 2016;120:44-53.

6. Lehto K, Pedersen N, Almqvist C, Lu Y, Brew B. Asthma and affective traits in adults: a genetically informative study.Eur Respir J. 2019;53(5):1802142.

7. Zhu Z, Zhu X, Liu C et al. Shared genetics of asthma and mental health disorders: a large-scale genome-wide cross-trait analysis [published online October 17, 2019].Eur Respir J. doi:10.1183.13993003.01507-2019

8. Park H, Song W, Cho S, et al. Assessment of genetic factor and depression interactions for asthma symptom severity in cohorts of childhood and elderly asthmatics. Exp Mol Med. 2018;50(7):77.

9. Yang Y, Zhao M, Zhang Y, Shen X, Yuan Y. Correlation of 5-HTT, BDNF and NPSR1 gene polymorphisms with anxiety and depression in asthmatic patients. Int J Mol Med. 2016;38(1):65-74.

10. Cortese S, Sun S, Zhang J, et al. Association between attention deficit hyperactivity disorder and asthma: a systematic review and meta-analysis and a Swedish population-based study. Lancet Psychiatry. 2018;5(9):717-726.

11. Rapaport L. Links seen between asthma and ADHD. Reuters website. http://www.reuters.com/article/us-health-adhd-asthma/links-seen-between-asthma-and-adhd-idUSKBN1L12FZ. August 15, 2018. Accessed November 14, 2019.

12. Kewalramani A, Bollinger M, Postolache T. Asthma and mood disorders.Int J Child Health Hum Dev. 2008;1(2):115-123.

13. University of Newcastle Australia. Severe Asthma Toolkit. Asthma and Mental Health. https://toolkit.severeasthma.org.au/living-severe-asthma/mental-emotional-health/. Updated February 12, 2019. Accessed November 5, 2019.

14. Kew K, Nashed M, Dulay V, Yorke J. Cognitive behavioural therapy (CBT) for adults and adolescents with asthma.Cochrane Database Syst Rev. 2016;9:CD011818.2

15. Pateraki E, Morris P. Effectiveness of cognitive behavioural therapy in reducing anxiety in adults and children with asthma: a systematic review.J Asthma. 2018;55(5):532-554.

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The Genetic Link Between Asthma and Mental Health - Pulmonology Advisor