Category Archives: Genetics

How healthtech startup Bione aims to use genetic testing in the fight against coronavirus – YourStory

Ever since the Human Genome Project began in the late 1980s, genetics and DNA have become topics of mass interest. The book Genome: The Autobiography of a Species in 23 chapters states that the genome is a book that wrote itself, continually adding, deleting, and amending for over four billion years.

For Dr Surendra Chikara, who has been working in the field for over 20 years now, the idea of founding Bione, a healthcare startup, was a no-brainer.

Monitoring the present coronavirus outbreak scenario in the country, we have included new parameters to our Longevity Plus kit. The new updated kit provides information about the susceptibility of a person to viruses like coronavirus, SARS-like viruses, HIV, Hepatitis C virus, etc. This could be based on an individuals genetic makeup or the patterns of living, Surendra says.

Dr Surendra, Founder of Bione

Surendra says a recent addition to the Bione Genetic test can check an individuals susceptibility to coronavirus. He adds that the platforms microbiome test, combined with its predictive analytics tools and artificial intelligence, can provide tailored recommendations to individuals to strengthen their microbiome and improve their immunity.

A research paper titled 'Evidence of gastrointestinal infection of SARS-CoV-2 revealed that 23.29 percent patients infected with SARS CoV-2 showed positive results in stool after showing negative in respiratory samples. Hence, the gut microbiome test is the only way to know when a virus is no longer in your system, Surendra says.

Surendra started his career with recombinant DNA technology and worked with Dr Gita Sharma, who had created the first r-DNA vaccine for Hepatitis-B in India.

My journey in genomics started under her support and guidance. It was the time when human genome sequencing and next-generation sequencing were starting to gain importance. We were in discussions to bring D2C technology to India, but the Indian healthcare market was not ready for direct-to-consumer genetic testing," Surendra says.

This is a huge problem that all my networks were aware of. We all know that the future of the global pharmaceutical industry lies in developing precision medicines tailored for individuals based on their genes, and clinical risk for developing a disease. Indian genetic data is highly diverse and a number of breakthroughs can happen. At Bione, we are doing our part to be part of this bigger picture of making India disease-free, Surendra says.

The different types of kits depend on the number of tests covered, and include Longevity kit, Longevity Plus Kit, and MyMicrobiome kit. The Longevity Plus kit covers over 415 parameters, including health, personalised medicine, fitness, and wellness.

The team claims that it also covers a parameter that determines specific gene variants that may contribute to enhance resistance to viruses like coronavirus, HIV, Hepatitis C, and many others.

The MyMicrobiome kit identifies and quantifies the microbiome in the gut, based on which a personalised diet is recommended.

Surendra says scientific research has shown that the gut microbiome plays an important role in the function and maintenance of our immune system. In ideal conditions, this microbiome-immune system alliance allows the initiation of protective responses against germs.

The platform also offers sample collection, with samples collected from an individuals homes. A pick-up is arranged as per your convenience by Bione. The DNA sequencing is done in a well-equipped lab by expert scientists, after which a detailed report is prepared.

Bione gXplore is a user-friendly, informative, and interactive app-based platform. On it, you can go through your report and easily understand the results of DNA analysis.

Slots with genetic or food and nutrition counsellors are provided as a free-of-cost service. The expert team of counsellors guides you to proactively plan your and your familys health and lifestyle choices.

The Bione team consists of experts from global institutions and scientists domains of genomics, genetics, bio-IT, genome informatics, quality assurance, sales, marketing, genetic/nutrition/fitness counselling. The startup has a total team size of 39 people.

The startup also runs a lab with scientists, bioinformaticians, and genetic counsellors. The team is applying for ISO 9001:2015, followed by CAP and CLIA accreditation to follow global standards.

Bione is projecting to test 20,000 to 30,000 samples in the first year of operations. Tests are priced between Rs 5,000 to Rs 20,000, with the option of paying in EMIs. Customers can choose the package based on their needs.

The startup has raised angel funding from a clutch of undisclosed investors. Gourish Singla, the Founder of blockchain startup Project Shivom has invested in Bione.

Currently, startups like The Gene Box and Hyderabad-based MapMyGenome work on providing preventive solutions based on an individuals genetic makeup.

He says the startup's high tech lab is using advanced technologies, including whole genome sequencing, while the competition is still working with array technology with limited markers.

(Edited by Kanishk Singh)

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How healthtech startup Bione aims to use genetic testing in the fight against coronavirus - YourStory

The genetic architecture of the human cerebral cortex – Science Magazine

The genetic architecture of the human cerebral cortex

By Katrina L. Grasby, Neda Jahanshad, Jodie N. Painter, Luca Colodro-Conde, Janita Bralten, Derrek P. Hibar, Penelope A. Lind, Fabrizio Pizzagalli, Christopher R. K. Ching, Mary Agnes B. McMahon, Natalia Shatokhina, Leo C. P. Zsembik, Sophia I. Thomopoulos, Alyssa H. Zhu, Lachlan T. Strike, Ingrid Agartz, Saud Alhusaini, Marcio A. A. Almeida, Dag Alns, Inge K. Amlien, Micael Andersson, Tyler Ard, Nicola J. Armstrong, Allison Ashley-Koch, Joshua R. Atkins, Manon Bernard, Rachel M. Brouwer, Elizabeth E. L. Buimer, Robin Blow, Christian Brger, Dara M. Cannon, Mallar Chakravarty, Qiang Chen, Joshua W. Cheung, Baptiste Couvy-Duchesne, Anders M. Dale, Shareefa Dalvie, Tnia K. de Araujo, Greig I. de Zubicaray, Sonja M. C. de Zwarte, Anouk den Braber, Nhat Trung Doan, Katharina Dohm, Stefan Ehrlich, Hannah-Ruth Engelbrecht, Susanne Erk, Chun Chieh Fan, Iryna O. Fedko, Sonya F. Foley, Judith M. Ford, Masaki Fukunaga, Melanie E. Garrett, Tian Ge, Sudheer Giddaluru, Aaron L. Goldman, Melissa J. Green, Nynke A. Groenewold, Dominik Grotegerd, Tiril P. Gurholt, Boris A. Gutman, Narelle K. Hansell, Mathew A. Harris, Marc B. Harrison, Courtney C. Haswell, Michael Hauser, Stefan Herms, Dirk J. Heslenfeld, New Fei Ho, David Hoehn, Per Hoffmann, Laurena Holleran, Martine Hoogman, Jouke-Jan Hottenga, Masashi Ikeda, Deborah Janowitz, Iris E. Jansen, Tianye Jia, Christiane Jockwitz, Ryota Kanai, Sherif Karama, Dalia Kasperaviciute, Tobias Kaufmann, Sinead Kelly, Masataka Kikuchi, Marieke Klein, Michael Knapp, Annchen R. Knodt, Bernd Krmer, Max Lam, Thomas M. Lancaster, Phil H. Lee, Tristram A. Lett, Lindsay B. Lewis, Iscia Lopes-Cendes, Michelle Luciano, Fabio Macciardi, Andre F. Marquand, Samuel R. Mathias, Tracy R. Melzer, Yuri Milaneschi, Nazanin Mirza-Schreiber, Jose C. V. Moreira, Thomas W. Mhleisen, Bertram Mller-Myhsok, Pablo Najt, Soichiro Nakahara, Kwangsik Nho, Loes M. Olde Loohuis, Dimitri Papadopoulos Orfanos, John F. Pearson, Toni L. Pitcher, Benno Ptz, Yann Quid, Anjanibhargavi Ragothaman, Faisal M. Rashid, William R. Reay, Ronny Redlich, Cline S. Reinbold, Jonathan Repple, Genevive Richard, Brandalyn C. Riedel, Shannon L. Risacher, Cristiane S. Rocha, Nina Roth Mota, Lauren Salminen, Arvin Saremi, Andrew J. Saykin, Fenja Schlag, Lianne Schmaal, Peter R. Schofield, Rodrigo Secolin, Chin Yang Shapland, Li Shen, Jean Shin, Elena Shumskaya, Ida E. Snderby, Emma Sprooten, Katherine E. Tansey, Alexander Teumer, Anbupalam Thalamuthu, Diana Tordesillas-Gutirrez, Jessica A. Turner, Anne Uhlmann, Costanza Ludovica Vallerga, Dennis van der Meer, Marjolein M. J. van Donkelaar, Liza van Eijk, Theo G. M. van Erp, Neeltje E. M. van Haren, Daan van Rooij, Marie-Jos van Tol, Jan H. Veldink, Ellen Verhoef, Esther Walton, Mingyuan Wang, Yunpeng Wang, Joanna M. Wardlaw, Wei Wen, Lars T. Westlye, Christopher D. Whelan, Stephanie H. Witt, Katharina Wittfeld, Christiane Wolf, Thomas Wolfers, Jing Qin Wu, Clarissa L. Yasuda, Dario Zaremba, Zuo Zhang, Marcel P. Zwiers, Eric Artiges, Amelia A. Assareh, Rosa Ayesa-Arriola, Aysenil Belger, Christine L. Brandt, Gregory G. Brown, Sven Cichon, Joanne E. Curran, Gareth E. Davies, Franziska Degenhardt, Michelle F. Dennis, Bruno Dietsche, Srdjan Djurovic, Colin P. Doherty, Ryan Espiritu, Daniel Garijo, Yolanda Gil, Penny A. Gowland, Robert C. Green, Alexander N. Husler, Walter Heindel, Beng-Choon Ho, Wolfgang U. Hoffmann, Florian Holsboer, Georg Homuth, Norbert Hosten, Clifford R. Jack Jr., MiHyun Jang, Andreas Jansen, Nathan A. Kimbrel, Knut Kolskr, Sanne Koops, Axel Krug, Kelvin O. Lim, Jurjen J. Luykx, Daniel H. Mathalon, Karen A. Mather, Venkata S. Mattay, Sarah Matthews, Jaqueline Mayoral Van Son, Sarah C. McEwen, Ingrid Melle, Derek W. Morris, Bryon A. Mueller, Matthias Nauck, Jan E. Nordvik, Markus M. Nthen, Daniel S. OLeary, Nils Opel, Marie-Laure Paillre Martinot, G. Bruce Pike, Adrian Preda, Erin B. Quinlan, Paul E. Rasser, Varun Ratnakar, Simone Reppermund, Vidar M. Steen, Paul A. Tooney, Fbio R. Torres, Dick J. Veltman, James T. Voyvodic, Robert Whelan, Tonya White, Hidenaga Yamamori, Hieab H. H. Adams, Joshua C. Bis, Stephanie Debette, Charles Decarli, Myriam Fornage, Vilmundur Gudnason, Edith Hofer, M. Arfan Ikram, Lenore Launer, W. T. Longstreth, Oscar L. Lopez, Bernard Mazoyer, Thomas H. Mosley, Gennady V. Roshchupkin, Claudia L. Satizabal, Reinhold Schmidt, Sudha Seshadri, Qiong Yang, Alzheimers Disease Neuroimaging Initiative, CHARGE Consortium, EPIGEN Consortium, IMAGEN Consortium, SYS Consortium, Parkinsons Progression Markers Initiative, Marina K. M. Alvim, David Ames, Tim J. Anderson, Ole A. Andreassen, Alejandro Arias-Vasquez, Mark E. Bastin, Bernhard T. Baune, Jean C. Beckham, John Blangero, Dorret I. Boomsma, Henry Brodaty, Han G. Brunner, Randy L. Buckner, Jan K. Buitelaar, Juan R. Bustillo, Wiepke Cahn, Murray J. Cairns, Vince Calhoun, Vaughan J. Carr, Xavier Caseras, Svenja Caspers, Gianpiero L. Cavalleri, Fernando Cendes, Aiden Corvin, Benedicto Crespo-Facorro, John C. Dalrymple-Alford, Udo Dannlowski, Eco J. C. de Geus, Ian J. Deary, Norman Delanty, Chantal Depondt, Sylvane Desrivires, Gary Donohoe, Thomas Espeseth, Guilln Fernndez, Simon E. Fisher, Herta Flor, Andreas J. Forstner, Clyde Francks, Barbara Franke, David C. Glahn, Randy L. Gollub, Hans J. Grabe, Oliver Gruber, Asta K. Hberg, Ahmad R. Hariri, Catharina A. Hartman, Ryota Hashimoto, Andreas Heinz, Frans A. Henskens, Manon H. J. Hillegers, Pieter J. Hoekstra, Avram J. Holmes, L. Elliot Hong, William D. Hopkins, Hilleke E. Hulshoff Pol, Terry L. Jernigan, Erik G. Jnsson, Ren S. Kahn, Martin A. Kennedy, Tilo T. J. Kircher, Peter Kochunov, John B. J. Kwok, Stephanie Le Hellard, Carmel M. Loughland, Nicholas G. Martin, Jean-Luc Martinot, Colm McDonald, Katie L. McMahon, Andreas Meyer-Lindenberg, Patricia T. Michie, Rajendra A. Morey, Bryan Mowry, Lars Nyberg, Jaap Oosterlaan, Roel A. Ophoff, Christos Pantelis, Tomas Paus, Zdenka Pausova, Brenda W. J. H. Penninx, Tinca J. C. Polderman, Danielle Posthuma, Marcella Rietschel, Joshua L. Roffman, Laura M. Rowland, Perminder S. Sachdev, Philipp G. Smann, Ulrich Schall, Gunter Schumann, Rodney J. Scott, Kang Sim, Sanjay M. Sisodiya, Jordan W. Smoller, Iris E. Sommer, Beate St Pourcain, Dan J. Stein, Arthur W. Toga, Julian N. Trollor, Nic J. A. Van der Wee, Dennis van t Ent, Henry Vlzke, Henrik Walter, Bernd Weber, Daniel R. Weinberger, Margaret J. Wright, Juan Zhou, Jason L. Stein, Paul M. Thompson, Sarah E. Medland, Enhancing NeuroImaging Genetics through Meta-Analysis Consortium (ENIGMA)Genetics working group

Science20 Mar 2020

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The genetic architecture of the human cerebral cortex - Science Magazine

A new book captures how genetics fills in the story of lifes evolution – Science News

Some Assembly RequiredNeil ShubinPantheon, $26.95

When descendants of ancient fish firsthauled themselves onto dry land, they didnt do so with lungs evolvedspecifically for that reason. The need to breathe air ultimately led to achange in the function of an organ the fish already had. Likewise, when birdstook to the air millions of years later, they did so using feathers that may haveoriginally evolved as insulation or as a way to attract mates.

In SomeAssembly Required, Neil Shubin, a paleontologist, explores these and othergreat evolutionary innovations, as well as the invisible genetic changes thatmade them possible. The book is an impressive chronicle of what geneticresearch over the last few decades has done to complement the story ofevolution, a tale once told through fossils, anatomy and physiology alone.

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Forinstance, studies show that the genes fish need to build swim bladders theorgan that helps control buoyancy are the same ones lungfish and humans useto build lungs. Such repurposing, of both genes and anatomical features, is arecurrent theme in the tree of life, Shubin notes.

In somecases, genetic mutations trigger the production of new proteins, which caneither serve new functions or perform old tasks more efficiently and, in turn,enhance the survival of the organism. In other cases, mutations cause genes tobe switched on or off earlier or later in development and at different placesin an embryo. These changes can alter the development of skulls, fins, limbsand other anatomical features, and sometimes result in totally new features.

Many ofthese tweaks may arise when genes duplicate themselves, a process that allowsone copy of a gene to retain its original function but frees up the additionalcopy to change and gain a new purpose. For instance, research suggests that thegene NOTCH2NL, which originated via duplication of a more primitive geneand is found in humans but not monkeys, triggers the growth of brain cells wheninserted into the DNA of lab mice. The gene probably contributes to humans bigbrain, scientists have proposed.

Viralinfections have also led to evolutionary changes in the host, Shubin pointsout. Syncytin, a protein that plays a vital role in the placenta of mammals, isa viral protein that lost its ability to infect other cells. At some point inthe evolution of mammals, the protein was incorporated into its hosts geneticcode and put to work, creating intercellular pathways that enable nutrients andother substances to flow between mothers and embryos.

By taking a historical perspective and recounting the gradual accumulation of knowledge about genes and their effects, Shubin transforms a complicated topic into a smooth and fascinating read.

Buy Some Assembly Required from Amazon.com.Science Newsis a participant in the Amazon Services LLC Associates Program. Please see ourFAQfor more details.

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A new book captures how genetics fills in the story of lifes evolution - Science News

In historic first, Ferrari to present its ‘pure blood’ SUV with speed genetics – Hindustan Times

When Enzo Ferrari launched the Italian luxury carmaker back in 1939, he could have never thought that his sports cars will have an SUV variant.As recently as 2016, former Ferrari boss Sergio Marchionne had said, You have to shoot me first." But the world has moved beyond their times. And the current global trend demands more SUVs from all kind of carmakers.

For the first time in its history, Ferrari has decided to to take the plunge most others have already taken and mastered. In 2021 Ferrari will debut its first SUV called Purosangue, that's Italian for "thoroughbred" or "pure blood", which will be a hybrid crossover with tints of Gran Turismo.

This modelwill have five doors, four seats in 2+2 configuration and front-center engine, and it is believed that it will be developed by the generational change of theFerrari GTC4Lusso,with the aesthetic features of this model, but with a higher body.

Although Louis Camilleri, the CEO of Ferrari, has emphasised that this product will not be an SUV, but a five-door model with an exterior design inspired by the coupes tells a different story.

As for the engines, there will be a hybrid version with turbo with six or eight cylinders,so you could enjoy powers close to 700 hp. That would mean the Ferrari Purosangue SUV will give Lamborghini Urus a run for its money.

The price of the Ferrari Purosangue SUV is likely to start from approximately300,000 euros ( 2.45 crore) to 500,000 euros( 4.10 crore).

Ferrari has already run into trouble over the name Purosangue. An anti-doping non-profit charity organisation Purosangue Foundation. Ferrari claims the charity 'has not made sufficient commercial use of the name to warrant exclusivity', and that the 'registration should be removed because of lack of use over the past five years'.

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In historic first, Ferrari to present its 'pure blood' SUV with speed genetics - Hindustan Times

GeneDx Celebrates 20 Year History as Pioneer In Genetic Sequencing and Testing – BioBuzz

GeneDx, a global leader in genomics andpatient testing, is celebrating its remarkable 20th anniversary throughout themonth of March.

The Gaithersburg, Maryland company has played an important role in the history of genetic sequencing and the rise of the BioHealth Capital Region as a global biohealth cluster. GeneDx was the very first company to commercially offer NGS (Next Generation Sequencing) testing in a CLIA (Clinical Laboratory Improvement Amendments) lab and has been at the leading edge of genetic sequencing and testing for two decades. The companys whole exome sequencing program and comprehensive testing capabilities are world-renowned.

In its storied 20 yearhistory, GeneDx has provided genetic testing to patients in over 55 countries.The company is known globally as world-class experts in rare and ultra-rarediseases.

In 2000, GeneDx was founded by former National Institutes of Health (NIH) scientists Dr. Sherri Bale and Dr. John Compton. These two genomics experts and thought leaders started GeneDx to complete an important mission: To provide rare and ultra-rare disease patients and families with diagnostic services that were not commercially available at that time.

Prior to launching GeneDx, Bale spent 16 years at NIH, the last nine as Head of the Genetic Studies Section in the Laboratory of Skin Biology. She has been a pioneer during her storied career, publishing over 140 papers, chapters and books in the field. Her 35-year career includes deep experience in clinical, cytogenetic, and molecular genetics research.

Before partnering with Bale to form GeneDx, Compton was an investigator at the Jackson Laboratory, and for the last nine years as a senior scientist in the Genetics Studies Section at the NIH. Comptons work on the molecular genetics of inherited skin disease and expertise in laboratory methodology is known throughout the world. Compton has remarkable experience in the development and application of molecular biological techniques to answer questions about genetics and epidermal differentiation.

GeneDx, like manysuccessful BHCR life science companies, had a humble start, operating initiallyout of the Technology Development Center incubator. Just six years later,GeneDx was acquired by BioreferenceLabs for approximately $17M.

From there, the companylaunched its first array CGH (Comparative Genomic Hybridization) or aCGH testin 2007. An array CGH is also called microarray analysis, which is a atechnique enabling high-resolution, genome-wide screening of segmental genomiccopy number variations (NIH). By 2008, GeneDx had launched its Cardiology NextGeneration Sequencing Panel and by 2011 the company had commercialized itsneurology testing program. In 2012, GeneDx launched its Whole Exome Sequencing (XomeDx) for which it has become so well known in the genomicfield. A year later its Inherited Cancer Panels hit the market. 2018 saw thecompany achieve a significant milestone when it announced ithad performed clinical Exome Sequencing on more than 100,000 individuals.

Both Bale and Comptonhave since retired and GeneDx is currently led by Chief Medical Officer Dr. Gabriele Richard;Chief Innovation Officer Kyle Retterer, MS;Rhonda Brandon, MS

Chief InformationOfficer; and Dr. Sean Hofherr, FACMG, CLIA Laboratory Director & ChiefScientific Officer.

GeneDx has come a longway from its incubator headquarters over the past two decades. With over 450employees, the company continues to deliver on its mission to provide crucialdiagnostic genetic testing capabilities to patients and families across theglobe.

Happy Anniversary GeneDX. Heres to many more.

Steve has over 20 years experience in copywriting, developing brand messaging and creating marketing strategies across a wide range of industries, including the biopharmaceutical, senior living, commercial real estate, IT and renewable energy sectors, among others. He is currently the Principal/Owner of StoryCore, a Frederick, Maryland-based content creation and execution consultancy focused on telling the unique stories of Maryland organizations.

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GeneDx Celebrates 20 Year History as Pioneer In Genetic Sequencing and Testing - BioBuzz

Pediatrician and Geneticist Dr. Harvey Levy Receives 2020 David L. Rimoin Lifetime Achievement Award in Medical Genetics from the ACMG Foundation for…

BETHESDA, Md., March 18, 2020 /PRNewswire/ -- Internationally acclaimed clinical geneticist and pediatrician Harvey Levy, MD, FACMG, is the recipient of the 2020 ACMG Foundation for Genetic and Genomic Medicine's David L. Rimoin Lifetime Achievement Award in Medical Genetics.

Dr. Levy, senior physician in medicine and genetics at Boston Children's Hospital and professor of pediatrics at Harvard Medical School, is being honored for his many years of groundbreaking work with patients who have genetic metabolic diseases including phenylketonuria (PKU), homocystinuria, cobalamin metabolic disorder, and others; as well as for his training and mentoring of the next generation of genetics service providers; and for his major contributions to the development of newborn screening in the United States and around the world.

Dr. Levy's medical career spans more than 60 years. He hasmentored over 60 medical genetics fellows; published more than 400 research articles, reviews, book chapters, and proceedings from research meetings; written 2 books and created 2 educational videos for patients and clinicians; served on editorial boards and as a reviewer for numerous prominent research journals; and founded and formerly directed both the Maternal PKU Program and the Inborn Errors of Metabolism/PKU Program at Boston Children's Hospital.

"Harvey Levy is a physician scientist who has been instrumental in the development of newborn screening programs for metabolic diseases," said former ACMG Executive Director Dr. Michael S. Watson, FACMG. "Of particular importance has been his melding of knowledge of clinical genetics, population genetics and metabolic diseases to identify critical issues in the transition from a disease-based understanding of particular metabolic diseases to a population-based prevention program that has had enormous impact on hundreds of newborns in the United States."

"We take newborn screening for granted now," said Gerard Berry, MD, director of the Metabolism Program and professor of pediatrics at Harvard Medical School. "There are laws in different states that babies need to be screened for certain diseases. But when Harvey began, this was uncharted territory. People didn't understand the power of newborn screening and how it could change lives by allowing someone to get on a diet or a medication that they need to take for life in order to be healthy. Harvey played a major role in allowing all of this to come to fruition. These same individuals, who might have been institutionalized years ago because of severe intellectual disability, are now students in elite colleges. Harvey possesses insight and super-ability to understand what is really important for healthcare. Newborn screening is one of the major healthcare successes of the previous centurymaybe the most important healthcare success. And Harvey was part of a group of unique individuals who helped to see that through."

The news that he had received the David L. Rimoin Lifetime Achievement Award came to Dr. Levy as a delightful surprise. "This means a great deal to me because of the ACMG, where I've been an active member for a number of years," Levy shared. "It's a wonderful organization full of outstanding individuals, so to be in that company is particularly gratifying. And it's very, very nice to be appreciated."

"The Rimoin family is proud to recognize Dr. Harvey L. Levy, whose outstanding work includes studies that formed the basis for newborn metabolic screening, the discovery of the first human vitamin B12defect and the establishment of cobalamin defects, and the development of Maternal PKU programs," said Dr. Ann Garber, David Rimoin's surviving spouse."Based on his scientific accomplishments, along with his remarkable integrity, empathy and collaboration, our family is pleased to honor Dr. Levy with the David L. Rimoin Lifetime Achievement Award."

Beyond his list of academic achievements and leadership positions, the nominations for Dr. Levy to receive this award stressed his abounding generosity of time, knowledge and skill while working with patients, families and the broad range of clinical providers and researchers who have collaborated with him.

"He's dedicated himself to the study of PKU and metabolic disorders with an energy and intellect and soul that is extraordinary," said neuropsychologist Susan Waisbren, PhD, a professor of psychology at Harvard Medical School and Dr. Levy's long-time collaborator at Boston Children's Hospital Metabolism Clinic. "One of the qualities I've always found striking is the respect he has for professions outside of medicine. In his mind, every member of the clinical team is important. He truly feels this and it shows in his academic as well as clinical work. He has included as co-authors psychologists, dieticians, social workers, genetic counselors, nurses, administrators, secretaries, and parents.

"The patients adore him, always," she added, "and they recognize a certain compassion and ability to see the whole person, not just the metabolic disorder."

"Harvey is one of those special individuals who one may encounteronce in a lifetime," said Dr. Levy's collaborator at Boston Children's Hospital, Dr. Berry. "He's much more than an accomplished geneticistand investigator.First and foremost, he's a very endearing individual with a wonderful bedside manner, and he's beloved by patients and families whom he's cared for over the years. Harvey goes out of his way to make things better for patients and their families."

As an example, Dr. Berry, who has knownDr. Levy for several decades, recalled a case around 15 years ago, when a baby had been born with PKU in a suburban hospital outside of Boston. "Without telling anyone, Harvey drove to the hospital just to say hello to the new parents and to see the baby," Dr. Berry recounted. "He didn't need to do that. Everything was already in place, people were already taking care of what needed to be done, but he felt compelled to drive out there on a Friday evening to say hello."

Harvey L. Levy was born in Augusta, Georgia in 1935, the eldest of three sons. His father owned a one-room mercantile that supplied clothing to families of the surrounding area, which comprised mostly farmland during that period. His mother, who was a homemaker, graduated from Hunter College and served as a technician in a research laboratory in New York before her marriage. He credits her with some of his initial interest in research.

"I was a guy who was looking for answers to things, so I was always interested in science. And I particularly liked chemistry," Dr. Levy recalled. "My mother was a very intelligent person and very interested in education and music and arts, and also interested in science. I talked with my mother quite a bit about science. So, I think she had a feeling that maybe it would be a good idea for me to be a doctor."

Dr. Levy began studying history as an undergraduate student at Emory University and then switched to an early admission program at the Medical College of Georgia. One of his medical school professors, the famous Dr. Victor Vaughan, headed the department of pediatrics and had a profound influence on the direction of Dr. Levy's career. "I was always interested in pediatrics because of its developmental aspects," explained Dr. Levy. "I felt that if I was going to do something in terms of disease, preventing or helping patients in a significant way, I had to start early, and the earlier the better."

After completing his medical degree in 1960, Dr. Levy served an internship in pediatrics at the Boston City Hospital under Dr.Sydney Gellis, a renowned teacher of pediatrics. Following the internship he moved to New York and the Columbia-Presbyterian Medical Center, where he spent a year under Dr. Dorothy Anderson, the discoverer of cystic fibrosis. Then, as world events escalated toward the start of the Vietnam War, he was drafted and served 2 years in the Unites States Navy as a medical officer stationed in the Philippines.

His introduction to genetics came when he returned to his medical training in 1964 as a second-year pediatrics resident at Johns Hopkins University, where he met the pioneering pediatric clinical geneticist Dr. Barton Childs. What he learned from Dr. Childs about DNA triggered memories of an earlier time, and brought forth questions that further defined Dr. Levy's future career.

"If I go back to my childhood, my upbringing, I had three cousins from one of my father's brothers, whose family we were very close to, and all of these cousins were developmentally disabled," Dr. Levy said. " No reason was given for their disability and I always thought if I got into genetics, then maybe I could discover the causes of brain disease, particularly intellectual disability, and maybe I could influence the prevention of it."

Dr. Levy returned to Boston, where he served as Chief Resident in Pediatrics back at the Boston City Hospital. During that year he heard a lecture by Dr. Mary Efron, director of the Amino Acid Laboratory at Massachusetts General Hospital, in which she described her studies on metabolic disorders and their enzymatic defects as well as how newborn screening was helping clinicians to identify infants with these disorders so they could receive immediate preventive treatment.

"I became so fascinated with that. It was just absolutely the thing that I really wanted to do," recalled Dr. Levy. "Here was chemistry, biochemistry, genetics, and the prevention of disease! So I asked Dr. Efron if I could do a fellowship with her, which resulted in an NIH-funded fellowship at Massachusetts General Hospital. And that began the journey that has continued to this day."

One cold, fateful Friday afternoon while he was working in Dr. Efron's lab, a telephone call came from Dr. Robert MacCready, director of the Massachusetts Newborn Screening Program. Dr. MacCready asked if someone could come to the screening lab to look at an unusual screening result. Dr. Efron was ill, so Dr. Levy rode his bicycle seven miles across town to the State Laboratory Institute, where he recognized the unusual spot on the paper chromatogram test as a high level of methionine, the hallmark of a genetic disorder he had recently learned about called homocystinuria.

"I called the baby's doctor and asked if I could see the baby at the Massachusetts General Hospital the following Monday," Dr. Levy recalled. "The family and baby came that Monday and I confirmed that the infant indeed had homocystinuria. I asked if they had other children, and was told, 'Yes, we have a daughter.' And I asked if she was ok, and they said she was fine. I asked to see her and she was brought to the next visit, where I immediately recognized that she was developmentally delayed and had other features of homocystinuria that had only recently been described. She was born before screening for homocystinuria had begun. So that launched me into the field of methionine metabolism and some very interesting new areas of research." Much of this research was in collaboration with the late Dr. Harvey Mudd of the NIH, who was the world's foremost authority on methionine and on sulfur amino acid metabolism in general.

Dr. Efron passed away and Dr. Levy assumed Dr. Efron's position as consultant to the Massachusetts Newborn Screening Program and, in 1972, was appointed Director of the program. Four years later, he became Chief of Biochemical Genetics for the New England Newborn Screening Program, a position he held until 1997. Throughout this period, Dr. Levy collaborated with the famed, late microbiologist Robert Guthrie, MD, PhD, of Buffalo, New York, who had established newborn screening with his invention of the PKU test. During this time, he also continued to conduct research and to diagnose and treat patients with metabolic disorders at the Massachusetts General Hospital. An extraordinary influence for Dr. Levy during this time, and continuing to the present, is the internationally famous Canadian biochemical geneticist Dr. Charles Scriver, with whom Dr. Levy has often collaborated.

Toward the end of the 1970's Dr. Levy moved to Boston Children's Hospital, where he transformed the PKU Clinic it into a larger, comprehensive clinicthe Inborn Errors of Metabolism clinicthat now sees patients and families from around the world who are affected by a range of diseases: PKU, galactosemia, histidinemia, methylmalonic acidemia, problems with vitamin B12 metabolism and many other disorders. The hospital recently named the metabolic program after Dr. Levy.

At Boston Children's Hospital Dr. Levy became concerned about infants born to mothers who have genetic metabolic disease. "Before we began newborn screening girls who had PKU became delayed in their mental development, so very few bore children," Dr. Levy explained. "But now that we were treating them from infancy, they were bearing children. Even though their babies were genetically normal, they would be born with multiple severe problems if the mothers were not strictly treated for PKU during the pregnancies. So, with an extraordinary group of very talented professionals, including psychologists, nutritionists, a nurse, and a social worker, as well as physicians, we organized the New England Maternal PKU Program and followed these women on very strict dietary treatment throughout their pregnancies. We found that this regimen prevented many of these problems that the babies would otherwise have."

Today Dr. Levy is considered one of the foremost proponents worldwide for newborn screening. He led a successful effort in Massachusetts to expand newborn metabolic screening with new technology so that 20 to 30 disorders of amino acid, organic acid and fatty acid metabolism could be included rather than only 5 or 6 disorders previously screened. Within the ACMG, Dr. Levy led the effort to develop "ACT Sheets," one-page synopses of the newborn screened metabolic disorders so that physicians caring for infants can easily read an explanation of the biochemical, clinical and treatment characteristics of the disorders when contacted by a newborn screening program about an abnormality. As part of a contract funded by the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD), Dr. Levy began and led the Newborn Screening Translational Research Network of the ACMG.

Though many of his contemporaries have retired, Dr. Levy continues to lead research efforts that examine the long-term outcomes of expanded newborn screening using tandem mass spectrometryincluding the medical, biochemical and neuropsychological outcomes in relation to early treatment. He is also involved with clinical trials to develop new therapies for PKU and homocystinuria. Dr. Levy is driven to continue his work because there is still much work to do. "The fact that we've had to rely on complicated diets that alter the lives of patients so they cannot enjoy a normal meal with their family or their friends, they have to only be able to eat this very difficult diet, and also the fact that we still discover diseases for which we have no treatment, " he explained, "these are the issues that trouble me. There are still individuals we discover during newborn screening or we discover later on because we didn't screen for their disorder, and they have severe disorders for which we have no treatments. There are still metabolic diseases that are not being prevented."

Dr. Levy still spends time communicating face-to-face with patients. "If you have a new baby, in a room with the family, you have to present this very complicated story, and the family has no idea what this is about," he explained. "So, we spend a great deal of time explaining the biochemistry, the genetics, the problems that can occur and the treatments that can prevent these problems. Early on, we just thought about biochemistry. But today we become more involved in talking about the genes, because we think it's important for families to understand the origin of these disorders since at some point we are likely to talk to them about the possibility of gene therapy, actually introducing the normal gene into the child. So, they need to understand where the disorder comes from. It's a complicated and long process. The family will take in as much information as they can, but as you can imagine, a lot of what we tell them will be forgotten or not understood. So, we go over everything with them again, and for as many times as they need."

One of the most pleasing aspects of Dr. Levy's career, he recounted, has been working with wonderful and dedicated individualspsychologists, nutritionists, dieticians, nurses, social workers, coordinators, administratorsand within the community of clinicians and researchers who study metabolic genetic disorders, a "relatively small, cohesive group of delightful, brilliant people" as he describes them. "It's been an extraordinarily wonderful professional life, as gratifying as any professional life I could ever dream of," reflected Dr. Levy. "Little did I know when I started that I would have this kind of life and little did I know that I would be awarded with the awards and certainly nothing comparable to the David L. Rimoin Lifetime Achievement Award."

The David L. Rimoin Lifetime Achievement Award is the most prestigious award given by the ACMG Foundation. A committee of past presidents of the American College of Medical Genetics and Genomics selects the recipient following nominations, which come from the general membership.

About the ACMG Foundation for Genetic and Genomic Medicine

The ACMG Foundation for Genetic and Genomic Medicine, a 501(c)(3) nonprofit organization, is a community of supporters and contributors who understand the importance of medical genetics and genomics in healthcare. Established in 1992, the ACMG Foundation supports the American College of Medical Genetics and Genomics (ACMG) mission to "translate genes into health." Through its work, the ACMG Foundation fosters charitable giving, promotes training opportunities to attract future medical geneticists and genetic counselors to the field, shares information about medical genetics and genomics, and sponsors important research.To learn more and support the ACMG Foundation mission to create "Better Health through Genetics" visit http://www.acmgfoundation.org.

Note to editors: To arrange interviews with experts in medical genetics, contact ACMG Senior Director of Public Relations Kathy Moran, MBA at kmoran@acmg.net.

Kathy Moran, MBAkmoran@acmg.net

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Pediatrician and Geneticist Dr. Harvey Levy Receives 2020 David L. Rimoin Lifetime Achievement Award in Medical Genetics from the ACMG Foundation for...

India-specific genome tests: The future of healthcare – Hyderus Cyf

Could public health in India be better served by genome testing tailored specifically to the Indian population? The answer could be yes.

Diagnostic techniques have been built and developed for the developed markets so obviously, the cost structure is accordingly, argued Nikhil Jakatdar, chief executive officer (CEO) of GenePath Diagnostics in an interview with the Economic Times. The relevance of this test has been designed for the Caucasian population and so to bring it to India the challenge involves around how you make it relevant to the Indian genome.

This raises an important question. Given the genetic diversity of India, how can genetic testing kits tailored for the use on European genomes be fully optimised for testing within India? Keeping this in mind, to what extent would genetic testing kits built specifically with India in mind benefit Indias medical system?

The first study resulting from the GenomeAsia 100K project has revealed that Asia has at least ten distinct genetic ancestral lines, compared to the single genetic lineage found in northern Europe. Indias population is diverse, with many different ancestral lines in different regions. As such, genetics vary significantly across the country, meaning a single Indian genetic test would be an improvement on current testing methods, but would likely need a more tailored approach.

India represents almost twenty percent of the worlds population and is anticipated by some to become the worlds most populous nation in the coming decade. Despite this only 0.2 percent of fully mapped genomes in global databanks are of Indian origin.

However, despite Indias minuscule representation within global gene databases, numerous genes have been discovered among the Indian population that predispose individuals to certain diseases. A previous example of this was the finding that the Indian population has a high prevalence of a number of genes that are implicated as risk factors for diabetes. Some of these genes were found to be unique to the Indian subcontinent, indicating a unique risk factor to the Indian population. Knowledge of such genetic traits can allow for the healthcare system to adapt and focus on prevention in a way that is more effective among at-risk populations.

Tailoring genome testing to Indias population can allow for the tests to make note of these unique risk factors, granting far better accuracy when assessing an individuals chances of developing a condition in the future.

As Jakatdar notes in the interview, a lot of tests have been built from ground up through pure R&D [research and development] by us here [in India] so that is the huge milestone when you can actually create tests for Indian market built in India by companies in India. Many of these tests were designed for the US market, however, given the capacity for both research and production of new genetic testing products are already in the domestic market. The development of tests specifically for India is not a far-flung eventuality, but a very real possibility in the coming years.

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Graduate Program in Genetics, Genomics & Bioinformatics …

13 Mar

Biochemist spins out joint venture company with Atomwise

Over the past few years, biochemist John Jefferson Perry at the University of California, Riverside, has collaborated on a number of projects with Atomwise Inc., a company that uses artificial intelligence, or AI, for drug discovery. Now Perry and the company have formed a joint venture called Theia Biosciences.

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The Truth About Bodybuilding Genetics | T Nation

How the Mutants Do It

World-record deadlifter Andy Bolton squatted 500 and deadlifted 600 the very first time he tried the lifts.

Former Mr. Olympia Dorian Yates bench-pressed 315 pounds on his first attempt as a teen.

Metroflex Gym owner Brian Dobson tells the story of his first encounter with then-powerlifter and future Mr. Olympia Ronnie Coleman. He describes Ronnie's enormous thighs with veins bulging through the spandex, despite the fact that Ronnie had never used an anabolic steroid at that time.

Arnold Schwarzenegger looked more muscular after one year of lifting than most people do after ten.

It's just plain obvious that some individuals respond much better to training than others. But what makes the elite respond so much better than us regular folks?

This probably isn't what you want to hear, but your progress is largely dependent on your genetics.

Recent research shows that some individuals respond very well to strength training, some barely respond, and some don't respond at all. You read that correctly. Some people don't show any noticeable results. Researchers created the term "non-responders" for these individuals.

A landmark study by Hubal used 585 male and female human subjects and showed that twelve weeks of progressive dynamic exercise resulted in a shockingly wide range of responses.

The worst responders lost 2% of their muscle cross-sectional area and didn't gain any strength whatsoever. The best responders increased muscle cross-sectional area by 59% and increased their 1RM strength by 250%. Keep in mind these individuals were subjected to the exact same training protocol.

The Hubal study isn't the only study showing these types of results. Petrella showed that 16 weeks of progressive dynamic exercise involving 66 human subjects failed to yield any measurable hypertrophy in 26% of subjects. Wow, sucks to be them!

Now, the question is, what mechanisms explain this? Let's dig into the current research.

Strong evidence suggests that the results you see in the gym are highly dependent on the efficacy of satellite cell-mediated myonuclear addition. In laymen's terms, your muscles won't grow unless the satellite cells surrounding your muscle fibers donate their nuclei to your muscles so they can produce more genetic material to signal the cells to grow.

Petralla showed that the difference between excellent responders in comparison to average and non-responders in strength training was mostly due to satellite cell activation. Excellent responders have more satellite cells that surround their muscle fibers, as well as a remarkable ability to expand their satellite cell pool via training.

In this study, excellent responders averaged 21 satellite cells per 100 fibers at baseline, which rose to 30 satellite cells per 100 fibers by week sixteen. This was accompanied by a 54% increase in mean fiber area. The non-responders averaged 10 satellite cells per 100 myofibers at baseline, which did not change post-training, nor did their hypertrophy.

A different article by Bamman using the same researchers involving the exact same experiment showed that out of 66 subjects, the top 17 responders experienced a 58% gain in cross-sectional area, the middle 32 responders gained 28% cross-sectional area, and the bottom 17 responders didn't gain in cross-sectional area. In addition:

Research by Timmons indicates that there are several highly expressed miRNAs that are selectivity regulated in subjects representing the lowest 20% of responders in a longitudinal resistance training intervention study.

Research by Dennis showed that individuals who have high expression of key hypertrophy genes have a distinct adaptive advantage over normal individuals. Individuals with lower baseline expression of key hypertrophy genes showed less adaptations to strength training, despite the fact that training did increase their gene expression in response to exercise.

Some folks hit the genetic jackpot, while others have gotten the genetic shaft. Genetically-speaking, anything that negatively impacts the ability of the myofibers to increase their number of myonuclei in response to mechanical loading will reduce hypertrophy and strength potential.

This ranges from the number of signaling molecules, to the cell's sensitivity to the signals, to satellite cell availability, to satellite cell pool expansion, to miRNA regulation. Nutrition and optimal programming play a role in hypertrophy of course, and certain genotypes may be associated with hypertrophy too.

Genes can affect fat storage and fat loss by influencing energy intake, energy expenditure, or nutrient partitioning. Researchers have coined the term "obesogenic environment" to describe the manner in which our changes in lifestyle over the past century has exposed our underlying genetic risk factors for excessive adiposity.

Natural selection may have favored those who possessed genes associated with thrifty metabolisms, which would have allowed for survival during times of nutrient scarcity. Now that much of the world has adopted a modern lifestyle characterized by sedentarism and excessive caloric intake, these same genes now contribute to poor health and obesity.

Bouchard took twelve pairs of twins and subjected them to 84 days over a 100-day period of overfeeding by 1,000 calories per day, for a total of 84,000 excess calories. Subjects maintained a sedentary lifestyle during this time. The average weight gain was 17.86 pounds, but the range went from 9.48 pounds to 29.32 pounds!

Even though each subject adhered to the same feeding schedule, the most metabolically cursed individual gained more than triple the weight than the most metabolically blessed individual, stored 100% of excess calories in his tissues (compared to only 40% tissue storage for the most-blessed individual), and increased abdominal visceral fat by 200% (compared to 0% in the case of the most-blessed individual).

Similar variances were shown by Bouchard with twins consuming constant energy intake while exercising frequently.

Perusse showed that heritability accounts for 42% of subcutaneous fat and 56% of abdominal visceral fat. This means that genetics greatly influence where you store fat, and some individuals have an alarming predisposition to store fat in their abdominal region.

Bouchard and Tremblay estimate that 40% of the variability in resting metabolic rate, thermic effect of food, and energy cost of low-to-moderate intensity exercise is genetically related. They also reported that levels of habitual physical activity are highly influenced by heredity.

Loos and Bouchard proposed that obesity has a genetic origin, and that sequence variations in adrenergic receptors, uncoupling proteins, the peroxisome proliferator-activated receptor, and lepton receptor genes were of particular relevance.

O'Rahilly and Farooqi add that the insulin VNTR and IGF-1 SNPs may be implicated in obesity as well, and Cotsapas showed 16 different loci that affect body mass index (BMI) which are all linked to extreme obesity as well. Rankinen mapped out hundreds of possible gene candidates that could promote obesity.

Fawcett and Barroso showed that the fat mass and obesity-associated gene (FTO) is the first universally accepted locus unequivocally associated with adiposity. FTO deficiency protects against obesity, and elevated levels increase adiposity most likely due to increased appetite and decreased energy expenditure.

Tercjak adds that FTO may affect insulin resistance too, and suggests that over 100 genes influence obesity. Herrerra and Lindgren list 23 genes that are associated with obesity, and suggest that heredity accounts for 40-70% of BMI!

Faith found evidence for genetic influences on caloric intake. Similar conclusions were drawn by Choquette, who examined 836 subjects' eating behaviors and found six genetic links to increased caloric and macronutrient consumption, including the adiponectin gene.

What's all that mean? It mans that some individuals are genetically predisposed to adiposity and abdominal fat storage.

But are some folks born to be great athletes while others are born to warm the bench? Let's find out.

While we still have much to learn about genetics as it relates to human performance, we do know that many different genes can affect performance.

Bray et al. (2009) mapped out the current knowledge of human genes that affect performance as of 2007 and concluded that 214 autosomal genes and loci as well as 18 mitochondrial genes appear to influence fitness and performance.

There are two alpha-actin proteins: ACTN2 and ACTN3. Alpha actins are structural proteins of the z-lines in muscle fibers, and while ACTN2 is expressed in all fiber types, ACTN3 is preferentially expressed in type IIb fiber types. These fibers are involved in force production at high velocities, which is why ACTN3 is associated with powerful force production.

Approximately 18% of individuals, or one billion people worldwide, are completely deficient in ACTN3 and their bodies create more ACTN2 to make up for the absence. These individuals just can't explode as quickly as their alpha-actin-3-containing counterparts, as elite sprinters are almost never alpha-actin-3 deficient (Yang).

The ACE gene, also known as the antiotensin converting enzyme, has also been implicated in human performance. An increase in the frequency of the ACE D allele is associated with power and sprint athletes, while an increased frequency of the ACE I allele is associated with endurance athletes (Nazarov).

Cauci showed that the variants of the VNTR IL-1RN gene is associated with improved athleticism. This gene affects the interleukin family of cytokines and enhances the inflammatory response and repair process following exercise. The work of Reichman lends support to this research, as they found that the interleukin-15 protein and receptor were associated with increased muscle hypertrophy.

Plenty of other genes exhibit potential to improve athletic performance, such as the myostatin gene, but conclusive evidence doesn't yet exist, or we just don't possess a clear enough understanding of the entire puzzle.

Although the research in this article is pretty scary, I have something to say about it.

First, we all have issues with genetics that we have to work around. Some of us are predisposed to carrying excess fat, some of us are lean but have stubborn areas of fat deposition, some have trouble building muscle, and some are muscular but have weak body parts. Some of us have all of this combined, and nobody has perfect genetics!

My list of genetic curses is a mile long, but despite this I've managed to develop a pretty respectable physique and somewhat impressive strength levels.

Second, the protocols used in the research didn't involve any experimentation, tweaking, and auto-regulatory training. We all need to tweak the variables and figure out our optimal programming methodology.

Some people respond best to variety, some to volume, some to intensity, some to frequency, and some to density. You have to discover the best stimulis for your body, which evolves over time.

And third, I've spoken to my colleagues about this issue and we're all in agreement: we've never trained any individuals who didn't look better after a couple of months of training, assuming they stick with the program. All of them lose fat and gain some muscular shape.

While some individuals have a much easier time than others developing an impressive physique, I've yet to see a lifter who trained in an intelligent manner fail to see any results.

So even if you're a "hard gainer" and you don't respond well, you can and will see results as long as you're consistent and as long as you continue to experiment. Of course, the rate and amount of adaptation is highly influenced by genetics, but sound training methods will always account for a large portion of training effects.

The lesson: Genetics make a difference, but smart training, diet, and supplements can help you maximize what your parents gave you!

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The Truth About Bodybuilding Genetics | T Nation

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