Category Archives: Cell Biology

MSc virologists explore infections and cell biology in new virtual laboratory | Imperial News – Imperial College London

As part of the College's move to remote learning, XX MSc Molecular Biology & Virology students are trialling remote research in a 'virtual lab'.

Students and staff in the Department of Infectious Disease are exploring the new format of teaching and learning over the course of the summer, while laboratory access continues to be limited.

The 'virtual, remote research projects' will now take the place of the remaining five months of the 'Laboratory Based Research Project', the final module on the programme.

From the outset the Department wanted to create an experience, at pace, that contrasted to the less interactive learning experience offered by a literature review.

Reflecting on the shift to virtual labs, Martin Lupton,Vice-Dean (Education) in the Faculty of Medicine, said:"Now more than ever the world needs experts in the medical field to tackle current and future global challenges. This means that lab work cannot simply 'pause', but needs to continue in a format that works well for our students.

"We are making plans to deliver programmes in a number of ways, dependent on progress in the fight against COVID-19. Through our campuses and our remote and online offerings we look forward to providing current and new students freshperspective in their chosendisciplines."

Delivering engaging and impactful research projects without easy access to a laboratory is a challenge, but oneembraced by the Department. Students' projects would always have taken place through conversation and supervision, including technical training, application of techniques in the lab, proper construction and design of experiments, and students' interpretation and presentation of data.

This practical experience of learning in a physical lab setting is a 'gold standard', according Mr Lupton and colleagues. Yet, it is possible in a virtual lab to create an environment where students gain the skills needed for working in a real lab.

XXX XXXX, an MSc student who is taking part in the virtual lab, said: ""

After being provided with direct, online training from research group leaders, and setting their key objectives, students are expected to:

Chair in Virology, and the originator of the idea of a 'virtual lab' for the programme, Professor Peter O'Hare, said: "Until we have a clearer sense of when and how it may be possible to return to on-campus labs, it's important that our students can tackle a range of research projects even if we must continue to be creative with a remote format.

"By offering a 'virtual lab' the team hope to equip students withpractical techniques and skills in data handling, interpretation, and critical evaluation. Bringing this all together as Remote Research Reports will prove to be an unexpected but hopefully interesting challenge.

"Just like any normal lab meeting or interaction, support and guidance will be on-hand for all students."

Complementary to this supportive environment research group leaders do also want to emphasise the benefits of independent learning, and participants having confidence in their own abilities. Students will still be expected to investigate research techniques independently and work closely with staff to recognise when they should move onto their next assignment.

All postgraduate programmes in the Faculty of Medicine are available to browse online. Application and enrolment dates remain unchanged by the COVID-19 outbreak.

The College's Graduate School is at the centre of the postgraduate community and provides details on what studying at Imperial is like.

Current and prospective students can view a wide selection of answers to frequently asked questions on the College's regularly updated COVID-19 webpages.

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MSc virologists explore infections and cell biology in new virtual laboratory | Imperial News - Imperial College London

Proteins of cells change their structure and role if they are warm – FREE NEWS

Proteins of cells change their structure and role if they are warm. This became known to scientists from the Center for Biotechnology Dresden and the Max Planck Institute for Molecular Cell Biology and Genetics in Germany.

Decades of research have shown that different organisms react similarly to temperature changes. For example, when they are too warm, their cells stop growing and stop the production of proteins necessary for growth and reproduction.

Instead, they begin to produce proteins that protect cells from damage. But researchers do not know how cells recognize heat stress and what mechanisms cause a change in their production.

For research, scientists used yeast. So they were able to determine the protein Ded1p, which changes its structure with temperature and reprograms the entire cell. They modeled his behavior in the laboratory without other components and saw that the protein is evenly distributed in the cytoplasm of the cell, but with increasing temperature it is collected in dense structures using the phase separation process. This allowed them to conclude that Ded1p is able to sense temperature and acts as a thermometer inside the cell.

This tells us that evolution endowed cells with high thermal sensitivity so that organisms can adapt to temperature fluctuations. This gives us hope that organisms can cope with global warming, explained Professor Simon Alberti, who led the study. He also added that the discovery has a more general meaning: the researchers discovered a mechanism inside the cell that helps the body cope with environmental changes and not just heat stress.

Scientists have suggested that cells can cope with a wide variety of alarms using proteins that are phase-separated to trigger different gene expression programs. In further studies, they want to determine whether this mechanism can help determine a persons disease in advance for example, age-related neurodegenerative diseases.

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Proteins of cells change their structure and role if they are warm - FREE NEWS

Atara Biotherapeutics Announces Appointment of Cell & Gene Therapy Expert Maria Grazia Roncarolo, MD to Board of Directors – Business Wire

SOUTH SAN FRANCISCO, Calif.--(BUSINESS WIRE)--Atara Biotherapeutics, Inc. (Nasdaq: ATRA), a pioneer in T-cell immunotherapy leveraging its novel allogeneic EBV T-cell platform to develop transformative therapies for patients with severe diseases including solid tumors, hematologic cancers and autoimmune diseases, today announced the appointment of immunology and cell & gene therapy expert Maria Grazia Roncarolo, MD, to the Board of Directors.

Dr. Roncarolo is the George D. Smith Professor in Stem Cell and Regenerative Medicine, Professor of Pediatrics and Medicine, Director of the Center for Definitive and Curative Medicine, and Co-Director of the Institute for Stem Cell Biology and Regenerative Medicine at Stanford University.

In 2014, Dr. Roncarolo established the Stanford Center for Definitive and Curative Medicine. The center, which is dedicated to the development of innovative stem cell and gene therapies for patients with currently incurable diseases, spans a wide range of bench and clinical research activities from basic biology through translational research and features its own GMP cell processing and Phase 1 study units.

I am thrilled to have one of the worlds leading experts in immunology and T cells, Dr. Roncarolo, bringing to our Board her experience and strategic vision in cell therapy and gene editing as well as her passion for transformative immunotherapies, said Pascal Touchon, President and Chief Executive Officer of Atara. She has dedicated her life to caring for patients with severe immunological and hematological diseases and has an impressive record in translating scientific discoveries in cell and gene therapy into novel treatments which aligns very well with Ataras mission.

Dr. Roncarolo has served as the primary investigator in several landmark trials involving the development of innovative stem cell- and gene-based therapies. She worked at DNAX Research Institute for Molecular and Cellular Biology in Palo Alto for several years, where she contributed to the discovery of novel cytokines, cell-signaling molecules that are part of the immune response. She studied the role of these cytokines in inducing immunological tolerance and in promoting stem cell growth and differentiation. As Director of the Telethon Institute for Cell and Gene Therapy and the San Raffaele Scientific Institute in Milan, Dr. Roncarolo was the principal investigator leading the successful gene therapy trial in SCID, a severe life threatening disorder in which patients lack an enzyme critical to DNA synthesis.

Beyond studying new therapies, Dr. Roncarolo has also helped elucidate drivers of disease at the molecular and cellular level, as she has investigated the mechanisms of immune-mediated diseases throughout her career and helped advance the understanding of immunological tolerance. Dr. Roncarolo was the recipient of the outstanding achievement award from the European Society of Gene and Cell Therapy (ESGCT) in 2010 and from the American Society of Gene and Cell Therapy (ASGCT) in 2017. She is currently the president of the Federation of Clinical Immunology Societies.

About Atara Biotherapeutics

Atara Biotherapeutics, Inc. (@Atarabio) is a pioneer in T-cell immunotherapy leveraging its novel allogeneic EBV T-cell platform to develop transformative therapies for patients with severe diseases including solid tumors, hematologic cancers and autoimmune disease. With our lead program in Phase 3 clinical development, Atara is the most advanced allogeneic T-cell immunotherapy company and intends to rapidly deliver off-the-shelf treatments to patients with high unmet medical need. Our platform leverages the unique biology of EBV T cells and has the capability to treat a wide range of EBV-associated diseases, or other severe diseases through incorporation of engineered CARs (chimeric antigen receptors) or TCRs (T-cell receptors). Atara is applying this one platform to create a robust pipeline including: tab-cel (tabelecleucel) in Phase 3 development for Epstein-Barr virus-driven post-transplant lymphoproliferative disease (EBV+ PTLD); ATA188, a T-cell immunotherapy targeting EBV antigens as a potential treatment for multiple sclerosis; and multiple next-generation chimeric antigen receptor T-cell (CAR T) immunotherapies for both solid tumors and hematologic malignancies. Improving patients lives is our mission and we will never stop working to bring transformative therapies to those in need. Atara is headquartered in South San Francisco and our leading-edge research, development and manufacturing facility is based in Thousand Oaks, California. For additional information about the company, please visit atarabio.com and follow us on Twitter and LinkedIn.

Forward-Looking Statements

This press release contains or may imply "forward-looking statements" within the meaning of Section 27A of the Securities Act of 1933 and Section 21E of the Securities Exchange Act of 1934. Because such statements deal with future events and are based on Atara Biotherapeutics' current expectations, they are subject to various risks and uncertainties and actual results, performance or achievements of Atara Biotherapeutics could differ materially from those described in or implied by the statements in this press release. These forward-looking statements are subject to risks and uncertainties, including those discussed in Atara Biotherapeutics' filings with the Securities and Exchange Commission (SEC), including in the Risk Factors and Managements Discussion and Analysis of Financial Condition and Results of Operations sections of the Companys most recently filed periodic reports on Form 10-K and Form 10-Q and subsequent filings and in the documents incorporated by reference therein. Except as otherwise required by law, Atara Biotherapeutics disclaims any intention or obligation to update or revise any forward-looking statements, which speak only as of the date hereof, whether as a result of new information, future events or circumstances or otherwise.

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Atara Biotherapeutics Announces Appointment of Cell & Gene Therapy Expert Maria Grazia Roncarolo, MD to Board of Directors - Business Wire

Global Cell Biology Cloud Computing Market’s Growth Trajectory Disrupted by COVID-19 Pandemic; Growth to be Restored Post Crisis Science Market…

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Global Cell Biology Cloud Computing Market's Growth Trajectory Disrupted by COVID-19 Pandemic; Growth to be Restored Post Crisis Science Market...

The Impact of SETD2 on Tumor Microenvironment in Clear Cell RCC – Targeted Oncology

Scott Haake, MD

The SET domain-containing protein 2 (SETD2) is common in clear cell renal cell carcinoma (RCC), occurring in about 10% to 15% of patients, and is known to play a role in the tumor microenvironment. However, investigators lack literature on the biology of the SETD2 mutation and how it could play a role in tumor growth.

At the 2019 International Kidney Cancer Symposium (IKCS), a study analyzed novel SETD2-dependent changes to the cellular lysine methylation landscape in the kidney cancer setting. The hypothesis was that SETD2-mutant tumors will have an increased sensitivity to therapies that target protein translation. Investigators utilized an agnostic approach with a mass spectrometry-based technique to evaluate these changes.

Overall, investigators observed a decrease in protein translations, which may represent a new therapeutic vulnerability of these cells that can be exploited with targeted therapies.

The key takeaway is that tumor genomics matter, and they drive biology, said Scott Haake, MD, following his presentation at the 2019 IKCS. If we can exploit that biology to apply targeted therapies, this is an opportunity for new therapeutic maneuvers that are tailored to the patients and individual tumors.

In an interview with Targeted Oncology, Haake, professor of Medicine, Vanderbilt University School of Medicine, discussed the current understandings of SETD2 mutations in clear cell RCC and the findings presented at the 2019 IKCS.

TARGETED ONCOLOGY: What do we know thus far about how SETD2 influences the tumor microenvironment?

Haake:SETD2 is mutated in 10% to 15% of clear cell RCC. Its role in the tumor microenvironment specifically is probably less well understood. However, it is thought to be a critical driver of tumor growth and progression as loss of SETD2 function is thought to increase as tumors metastasize.

TARGETED ONCOLOGY: Could you explain the biology of SETD?

Haake: Its less well understood than we would like to acknowledge. Classically SETD2 modulates the epigenetics of the cell or chromatin structure, which is the way that the DNA is packaged into the cell, and when you lose SETD2, it changes that structure in a way that is thought to influence gene expression. This is classically how we think about SETD2 biology. More recently, there has been data showing that SETD2 has many other functions, including modulating tubulin structure which is important in mitosis and chromosome segregation, as well as inflammatory signaling through STAT1.

Because we still have an incomplete picture of how SETD2 is important for tumor development, this was 1 of the impotencies for the current study where we took an agnostic approach to see the different ways thatSETD2 can modulate cell function in the context of cancer.

[To identify SEDT2 mutations], stereotypical next-generation sequencing approaches are the way of the future, and that is what everyone does.

TARGETED ONCOLOGY:Are there any other therapies for targeting theSETD2mutation?

Haake: Through our work, we have identified a novel role of SETD2 regulating protein translation. I have mentioned the classic ways that SETD2 influences cell biology, but our work suggests that in addition, SETD2is regulating protein translation at the ribosome by regulating methylation of certain translation elongation factors. In SETD2-mutant tumors, you lose methylation of these elongation factors, which decreases protein translation, so we think this might be an opportunity for synthetic lethality in SETD2-mutant tumors where these cells will have increased sensitivity to therapies that target protein translation, or at least that is the hypothesis we are pursuing.

TARGETED ONCOLOGY:Could you provide an overview of your presentation on SETD2 from the 2019 IKCS?

Haake: There are a number of targets for SETD2 that have been described in the literature, but we wanted to take a more agnostic approach. We used a mass spectrometry-based technique to look at SETD2-dependent changes in lysine methylation in proximal renal tubular cells, which are the cells from which RCC is thought to derive.

One of the things we observed was the loss of methylation in a number of distinct lysine residues within an elongation factor called EF1A. It has been shown in lung cancer that loss of methylation of these lysine residues in EF1A correlates with decreased protein translation and decreased progression of tumors. Sure enough, when we look at this in our kidney cancer cells, we see decreased protein translation, and when we look at tumors from humans with SETD2 mutations, we also observed similar changes. We think this is a new aspect of SETD2 biology in the context of kidney cancer and may represent a therapeutic vulnerability of these cells, which we can exploit.

TARGETED ONCOLOGY:What are the next steps for this research?

Haake: That is really where we are at now. We are doing a handful of experiments to validate the mechanism I proposed, but we are also testing drugs and wild-type, as well as SETD2-knockout cells which target protein translation to test this hypothesis that SETD2-knockout cells are going to have increased sensitivity to these sorts of drugs.

TARGETED ONCOLOGY:What is the key takeaway from your presentation?

Haake: The key takeaway is that tumor genomics matter, and they drive biology. If we can exploit that biology to apply targeted therapies, this is an opportunity for new therapeutic maneuvers that are tailored to the patients and individual tumors.

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The Impact of SETD2 on Tumor Microenvironment in Clear Cell RCC - Targeted Oncology

NEOVII to Develop a Novel Vaccine for COVID-19 in an Exclusive Partnership With Tel Aviv University – WFMZ Allentown

RAPPERSWIL, Switzerland, May 12, 2020 /PRNewswire/ -- Neovii, the Swiss-based biopharmaceutical company and a member of Israeli-based Neopharm Group, has signed a research and license agreement with Tel Aviv University's (TAU) RAMOT, its technology transfer company, to work in collaboration with a team led byProfessor Jonathan Gershoni of the School of Molecular Cell Biology and Biotechnologyto develop a novel and potentially life-saving COVID-19 vaccine.

The agreement will grant Neovii the exclusive right to develop and commercialize a novel and recently patented platform technology that has been developed by Professor Gershoni for the rapid discovery of epitope-based vaccines. The collaboration is focused on the development of a first-in-class COVID-19 vaccine that targets the Achilles' heel of the virus by reconstructing the coronavirus's Receptor Binding Motif (RBM), a critical structure of its "spike" protein.The "spike" protein itself is the major surface protein that the virus uses to bind to the cellular receptor that acts as the doorway into the human cell. After the spike protein binds to the human cell receptor, the viral membrane fuses with the human cell membrane, allowing the genome of the virus to enter human cells and begin infection.

"We have been working on coronaviruses for the last 15 yearsdeveloping a method of reconstructing and reconstituting the RBM structure of the spike protein in SARS-CoV and subsequently in MERS-CoV," explains Professor Gershoni. "The moment the genome of the new virus was published in early January 2020, we began the process of reconstituting the RBM of SARS-CoV-2, the virus that causes COVID-19, and expect to have a reconstituted RBM of the new virus soon.This is the basis for the new vaccine, which could be ready for use within a year to a year and a half."

"The smaller the target and the focus of the attack, the safer and greater the effectiveness of the vaccine," adds Prof. Gershoni."The virus takes far-reaching measures to hide its RBM from the human immune system, but the best way to 'win the war' is to develop a vaccine that specifically targets the virus's RBM."

Keren Primor Cohen, CEO of Ramot: "We hope that through this collaboration with Neovii, it will be possible to produce an effective vaccine that targets the coronavirus's Achilles' heel and will accelerate the development of a protective vaccine against this global threat."

Jrgen Pohle, Neovii CEO, commented, "The outbreak of the COVID-19 pandemic has demonstrated how fragile and vulnerable our societies are in the face of a pandemic. We are extremely excited about our collaboration with Professor Gershoni and TAU which provides Neovii with a first-in-class platform for the rapid development of promising vaccine candidates towards any future emerging pandemics including COVID-19. Furthermore, the COVID-19 vaccine is highly synergistic to Neovii's core expertise in the development and manufacturing of passive polyclonal antibodies and provides an opportunity to bring a COVID-19 immunotherapy in a rapid manner."

Neovii's long-standing and well-established experience and capabilities in developing, manufacturing and commercializing biopharmaceuticals will support the ambition to have a vaccine ready for use in broader population in an accelerated timeline.

About Neovii

Swiss-based Neovii, a member of Israeli-based Neopharm Group, is an independent, rapidly growing commercial-stage biopharmaceutical company with a patient-focused mission to develop and market novel, life-transforming therapies. Neovii has been dedicated for over three decades to improving the outcomes in transplantation medicine and the treatment options for hemato-oncological as well as immune disorders.

Media Relations Contacts:Rebeca Thomas, Senior Account Director, Jango Communications+44 (0)1344 860612beca@jangocom.com

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NEOVII to Develop a Novel Vaccine for COVID-19 in an Exclusive Partnership With Tel Aviv University - WFMZ Allentown

What needs to go right to get a coronavirus vaccine in 12-18 months – The Southern Maryland Chronicle

By: Marcos E. Garca-Ojeda, Professor of Molecular and Cell Biology, University of California, Merced

I, like many Americans, miss the pre-pandemic world of hugging family and friends, going to work and having dinner at a restaurant. A protective vaccine for SARS-Cov2 is likely to bethe most effective public health toolto get back to that world.

Anthony Fauci, director of the National Institute of Allergy and Infectious Diseases, cautiously estimates that a vaccine could be available in12 to 18 months.

I am aprofessor of microbiology and immunologyand study how the immune system develops. I think Dr. Faucis estimate is an optimistic one, but possible.

Traditional vaccine development is a long and complicated process. Only about 6% of vaccine candidates are eventuallyapproved for public use, and the process takes10.7 years, on average.

But these are not traditional times. Researchers around the world areinnovating the process of vaccine developmentin real time to develop a vaccine as fast as possible. So how close are we to a vaccine?

Vaccines prevent disease by boosting a persons natural immune response against a microbe that they havenot encountered before. There are a number of different types of vaccines in development for SARS-CoV-2 and they fall into three broad categories:traditional killed-virus vaccines, protein-based vaccines and gene-based vaccines. No matter the type, every single vaccine candidate must go through the same vetting process before it can be put into use.

Once researchers have developed a potential candidate, they begin the first step of testing in laboratories, called preclinical studies. Scientists use laboratory animals to examine if the candidate vaccine induces an immune response to the virus and to check whether the vaccine causes any obvious medical problems.

Once a vaccine is proven safe in animals, researchers begin human testing. This is where thefederal Food and Drug Administrationbegins to regulate the process.

Phase 1 studies test for safety and proof-of-concept. Researchers give a small number of human volunteers the vaccine. Then they look for medical problems and see if it induces some sort of immune response.

In Phase 2 studies, researchers give the vaccine to hundreds of volunteers to determine the optimal vaccine composition, dose and vaccination schedule.

The final step before a vaccine is approved by the FDA for broad use is a Phase 3 trial. These involvethousands of volunteersand provide data on how good the vaccine is at preventing infection. These large trials will also uncover rarer side effects or health issues that may not show up in the smaller trials.

If in any of these phases a vaccine candidate appears to be ineffective or cause harm to people, the researchers must start over with a new candidate.

After a vaccine candidate successfully completes these clinical trials, a medical regulatory panel in the FDA looks at the evidence, and if the vaccine is effective and safe, approves it for general use. Experts estimate that the whole process costs betweenUS$1 billion and $5 billion.

But approval is not the only hurdle. As has been demonstrated by thesevere lack of coronavirus testing, easy and fast production of a test or vaccine is as critical as having one that works.

Both clinical efficacy and ease of production must be considered when asking how long until a vaccine is ready.

As of April 30, 2020, there were eight vaccine candidates currently in Phase 1 (or joint Phase 1/Phase 2) clinical trials and 94 vaccines candidatesin preclinical studies.

Three of the eight aretraditional vaccinesthat useinactivatedor killed virus. Two of the others areprotein-basedvaccines that use amodified cold virus to deliver the proteinthat will stimulate the immune response.

The final three vaccines in Phase 1 or 2 trials, and the only two in the U.S., are gene-based vaccines. To me, these seem like the most promising.

Gene-based vaccines contain a gene or part of a gene from the virus that causes COVID-19, but not the virus itself. When a person is injected with one of these vaccines, their own cells read the injected gene and make a protein that is a part of the coronavirus. This one protein isnt dangerous by itself, but it should trigger an immune response that would lead to immunity from the coronavirus.

Gene-based vaccinescome in DNA form, like the vaccinein Phase 1 clinical trialsfrom Inovio Pharmaceuticals in the U.S., or in RNA form, like the vaccine in a simultaneous Phase 1/Phase 2 trial from theGerman company BioNTechand the vaccine in Phase 1 trials from theU.S.-based Moderna.

No gene-based vaccines have ever been approved for human use, but DNA vaccines are used onanimals, and a few were inclinical trialsforthe Zika virus.

In the past, researchers have struggled to develop DNA vaccines that produce strong immune responses, but new techniqueslook promising. RNA vaccines tendto be more effectivein animal studies but have also required innovations before human use. It may be that the time ofgene-based vaccines has arrived.

Another benefit of gene-based vaccines is that manufacturers would likely be able to produce large amountsmuch faster than traditional vaccines. DNA and RNA vaccines would also bemore shelfstable than conventional vaccinessince they dont use ingredients like cell components or chicken eggs. This would make distribution, especially to rural areas, easier.

The three gene-based vaccines and the five other candidates face many challenges before you or I will be vaccinated. The fact that they are in Phase 1 and 2 trials is encouraging, but the very point of clinical trials is to reveal any problems with a vaccine candidate.

And there are alot of potential problems. The preclinical results in laboratory animals might not translate well to people. The level of immune protection might be low. And people may react adversely when injected with the vaccine.

Any coronavirus vaccine could also produce a dangerous reaction called immune enhancement, where the vaccine actually worsens the symptoms of a coronavirus infection. This is rare, buthas happened with past vaccine candidatesfor dengue fever and other viruses.

So, how long before we have a vaccine against the COVID-19 virus?

No vaccines have made it through Phase 1 or Phase 2 trials yet, and Phase 3 trials generally take between one and four years. If researchers get lucky and one of these first vaccines is both safe and effective, we are still at least a year away from knowing that. At that point manufacturers would need to start producing and distributing the vaccine at a massive scale.

It is unclear what percent of the population would need to be vaccinated against SARS-CoV-2, but in general, you need to immunize between 80% and 95% of the population to have effectiveherd immunity. Depending on what the virus does in the coming months, that might not be necessary, but if it is, thats 260-300 million people in the U.S. alone.

Researchers are doing everything they can to develop a vaccine as fast as possible while still making sure it is effective and safe. Manufacturers can help by preparing flexible systems that could be ready to produce whichever candidate gets across the finish line first.

If everything goes well, Faucis 12- to 18-month prediction may be right. If so, it will be thanks to the tireless work of scientists, the support of international organizations and manufacturers all innovating and working together to fight this virus.

Marcos E. Garca-Ojeda, Professor of Molecular and Cell Biology, University of California, Merced

This article is republished from The Conversation under a Creative Commons license. Read the original article.

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What needs to go right to get a coronavirus vaccine in 12-18 months - The Southern Maryland Chronicle

Why are there so few antivirals? | Cosmos – Cosmos

By Christine Carson, University of Western Australia, and Rachel Roper, East Carolina University

As the end of the second world war neared, mass production of the newly developed antibiotic penicillin enabled life-saving treatment of bacterial infections in wounded soldiers. Since then, penicillin and many other antibiotics have successfully treated a wide variety of bacterial infections.

But antibiotics dont work against viruses; antivirals do. Since the outbreak of the coronavirus pandemic, researchers and drug companies have struggled to find an antiviral that can treat SARS-CoV-2, the virus that causes COVID-19.

Why are there so few antivirals? The answer boils down to biology, and specifically the fact viruses use our own cells to multiply. This makes it hard to kill viruses without killing our own cells in the process.

The differences between bacterial and human cells are what make antibiotics possible.

Bacteria are self-contained life forms that can live independently without a host organism. They are similar to our cells, but also have many features not found in humans.

For example, penicillin is effective because it interferes with the construction of the bacterial cell wall. Cell walls are made of a polymer called peptidoglycan. Human cells dont have a cell wall or any peptidoglycan. So antibiotics that prevent bacteria from making peptidoglycan can inhibit bacteria without harming the human taking the medicine. This principle is known as selective toxicity.

Unlike bacteria, viruses cannot replicate independently outside a host cell. There is a debate over whether they are really living organisms at all.

To replicate, viruses enter a host cell and hijack its machinery. Once inside, some viruses lie dormant, some replicate slowly and leak from cells over a prolonged period, and others make so many copies that the host cell bursts and dies. The newly replicated virus particles then disperse and infect new host cells.

An antiviral treatment that intervenes in the viral life cycle during these events could be successful. The problem is that if it targets a replication process that is also important to the host cell, it is likely to be toxic to the human host as well.

Killing viruses is easy. Keeping host cells alive while you do it is the hard part.

Successful antivirals target and disrupt a process or structure unique to the virus, thereby preventing viral replication while minimising harm to the patient. The more dependent the virus is on the host cell, the fewer targets there are to hit with an antiviral. Unfortunately, most viruses offer a few points of unique difference that can be targeted.

Another complication is that different viruses vary from each other much more than different bacteria do. Bacteria all have double-stranded DNA genomes and replicate independently by growing larger and then splitting into two, similar to human cells.

But there is extreme diversity between different viruses. Some have DNA genomes while others have RNA genomes, and some are single-stranded while others are double-stranded. This makes it practically impossible to create a broad spectrum antiviral drug that will work across different virus types.

Nevertheless, points of difference between humans and viruses do exist, and their exploitation has led to some success. One example is influenza A, which is one form of the flu.

Influenza A tricks human cells so it can enter them. Once inside our cells, the virus needs to undress, removing its outer coat to release its RNA into the cell.

A viral protein called matrix-2 protein is key to this process, facilitating a series of events that releases the viral RNA from the virus particle. Once the viral RNA is released inside the host cell, it is transported to the cell nucleus to start viral replication.

But if a drug jams the matrix-2 protein, the viral RNA cant exit the virus particle to get to the cell nucleus, where it needs to be to replicate. So, the infection stalls. Amantadine and rimantadine were early antiviral successes targeting the matrix-2 protein.

Zanamivir (Relenza) and oseltamivir (Tamiflu) are newer drugs that have also had success in treating patients infected with influenza A or B. They work by blocking a key viral enzyme, obstructing virus release from the cell, slowing the spread of infection within the body, and minimising the damage the infection causes.

A COVID-19 vaccine may be difficult to create. So testing antivirals to find one that can effectively treat COVID-19 remains an important goal.

Much depends on knowing the intricacies of the SARS-CoV-2 virus and its interactions with human cells. If researchers can identify unique elements in how it survives and replicates, we can exploit these points of weakness and make an effective antiviral treatment.

This article is supported by the Judith Neilson Institute for Journalism and Ideas.

Christine Carson, Senior Research Fellow, School of Biomedical Sciences, University of Western Australia and Rachel Roper, Associate Professor of Microbiology and Immunology, East Carolina University

This article is republished from The Conversation under a Creative Commons license. Read the original article.

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Why are there so few antivirals? | Cosmos - Cosmos

Dyno Therapeutics Announces Presentations at 2020 American Society of Gene and Cell Therapy Conference – BioSpace

Dyno sponsors ASGCT virtual career fair

CAMBRIDGE, Mass.--(BUSINESS WIRE)-- Dyno Therapeutics, a biotechnology company applying artificial intelligence (AI) to gene therapy, today announced two presentations and a poster at the American Society of Gene and Cell Therapy (ASGCT) conference being held as a virtual meeting on May 12-15, 2020.

Details for the presentations and poster are as follows:

Presentations

Title: Artificial intelligence powered design of synthetic AAV capsids without pre-existing immunity for the universal treatment of all patientsPresenter: Eric Kelsic, Ph.D., Chief Executive Officer and Co-founder, Dyno TherapeuticsEducation Session Title: Synthetic Biology Meets Immunology: DNA and RNA ToolsDate and Time: Tuesday May 12, 2020; 2:40 - 3:15 p.m.

Title: Massively Parallel Deep Diversification of AAV Capsid Proteins by Machine LearningPresenter: Sam Sinai, Ph.D., Lead Machine Learning Scientist and Co-founder, Dyno TherapeuticsDate and Time: Wednesday May 13, 2020; 4:30 - 4:45 p.m.Oral Abstract Session Title: Vector and Cell Engineering, Production or Manufacturing IIIAbstract Number: 541

Poster

Title: Accurately Quantifying Transduction within Barcoded AAV Capsid Libraries via Tracking of Single-Molecule ID TagsPresenters: Kathy Lin, Ph.D., Computational Biology Scientist, and Jeff Gerold, Ph.D., Head of Data Science, Dyno TherapeuticsDate and Time: Thursday, May 14, 2020; 5:30 - 6:30 p.m.Poster Session Title: AAV Vectors - Virology and VectorologyAbstract Number: 1006

This poster will be available under the Publications section of the Dyno Therapeutics website at the time of the presentation at http://www.dynotx.com.

ASGCT Virtual Career Fair

Also at ASGCT 2020, Dyno is the main sponsor of the virtual career fair. Dyno is actively recruiting as the company continues to grow its current team of 20 employees and expects to double in the next year. Current listings can be found at the ASGCT Career Fair website and at http://www.dynotx.com.

About CapsidMap for Designing AAV Gene Therapies

By designing capsids that confer improved functional properties to Adeno-Associated Virus (AAV) vectors, Dynos proprietary CapsidMap platform overcomes the limitations of todays gene therapies on the market and in development. Todays treatments are primarily confined to a small number of naturally occurring AAV vectors that are limited by delivery, immunity, packaging size, and manufacturing challenges. CapsidMap uses artificial intelligence (AI) technology for the design of novel capsids, the cell-targeting protein shell of viral vectors. The CapsidMap platform applies leading-edge DNA library synthesis and next generation DNA sequencing to measure in vivo gene delivery properties in high throughput. At the core of CapsidMap are advanced search algorithms leveraging machine learning and Dynos massive quantities of experimental data, that together build a comprehensive map of sequence space and thereby accelerate the discovery and optimization of synthetic AAV capsids.

Dynos technology platform builds on certain intellectual property developed in the lab of George Church, Ph.D., who is Robert Winthrop Professor of Genetics at Harvard Medical School (HMS), a Core Faculty member at Harvards Wyss Institute for Biologically Inspired Engineering, and a co-founder of Dyno. Several of the technical breakthroughs that enabled Dynos approach to optimize synthetic AAV capsid engineering were described in a November 2019 publication in the journal Science, based on work conducted by Dyno founders and members of the Church Lab at HMS and the Wyss Institute. Dyno has an exclusive option to enter into a license agreement with Harvard University for this technology.

About Dyno Therapeutics

Dyno Therapeutics is a pioneer in applying artificial intelligence (AI) and quantitative high-throughput in vivo experimentation to gene therapy. The companys proprietary CapsidMap platform is designed to rapidly discover and systematically optimize superior Adeno-Associated Virus (AAV) capsid vectors with delivery properties that significantly improve upon current approaches to gene therapy and expand the range of diseases treatable with gene therapies. Dyno was founded in 2018 by experienced biotech entrepreneurs and leading scientists in the fields of gene therapy and machine learning. The company is located in Cambridge, Massachusetts. Visit http://www.dynotx.com for additional information.

View source version on businesswire.com: https://www.businesswire.com/news/home/20200512005459/en/

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Dyno Therapeutics Announces Presentations at 2020 American Society of Gene and Cell Therapy Conference - BioSpace

Single Cell Sequencing: Transform Your Immunology and Cancer Research from Bulk to Single Cell Analysis, Upcoming Webinar Hosted by Xtalks – PR Web

Xtalks Life Science Webinars

TORONTO (PRWEB) May 12, 2020

Single cell sequencing has transformed our ability to discern the cellular and molecular makeup of human immune systems and tissues in a unique manner with a level of precision that other omic technologies are unable to provide. Coupled with rigorous analysis, this technology is able to identify rare cell populations/subtypes and provide novel insights about pathways and thus transform our ability to characterize human disease, as well as, drug targeting through a deeper understanding of underlying biology.

Single cell RNA sequencing, in particular, allows a researcher to identify complex heterogeneous cell types at a molecular level. For infectious disease research, single cell data analysis helps us understand our immune system responses to different pathogens. In cancer studies, this means a deeper understanding of the ecosystems of malignant cells; providing better resolution of the tumor microenvironment. This ultimately helps to more efficiently and effectively treat diseases by different modalities such as cell-based and immuno-therapies.

In this webinar, please join our invited guest speakers as we discuss the advantages and challenges of single cell sequencing and how this technology has helped deliver a deeper understanding of disease and cellular biology in unique and complementary ways to other omics technologies.

Join Jeffrey Wallin, PhD, Sr. Director Biomarkers, Gilead Sciences, Rosha Poudyal, Science & Technology Advisor, 10X Genomics, Kristof O'Connor, Sales Executive, 10X Genomics and Hongye Sun, PhD, Scientific Fellow, WuXi NextCODE in a live webinar on Wednesday, May 27, 2020 at 10am EDT (3pm BST/UK).

For more information or to register for this event, visit Single Cell Sequencing: Transform Your Immunology and Cancer Research from Bulk to Single Cell Analysis.

ABOUT XTALKSXtalks, powered by Honeycomb Worldwide Inc., is a leading provider of educational webinars to the global life science, food and medical device community. Every year thousands of industry practitioners (from life science, food and medical device companies, private & academic research institutions, healthcare centers, etc.) turn to Xtalks for access to quality content. Xtalks helps Life Science professionals stay current with industry developments, trends and regulations. Xtalks webinars also provide perspectives on key issues from top industry thought leaders and service providers.

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Single Cell Sequencing: Transform Your Immunology and Cancer Research from Bulk to Single Cell Analysis, Upcoming Webinar Hosted by Xtalks - PR Web