Category Archives: Biochemistry

University Sees Record-Breaking Year In Grant Funding News Center – Montclaire News

October 7, 2020

Across disciplines, faculty have received more than $22M in grants to further programs and research

Posted in: Homepage News, University

Montclair State faculty, leading educational programs and research in multiple disciplines across the University attracted a record-breaking $22.4 million in external grant funding for fiscal year 2020, shattering the FY 2019 record of $17.9 million.

Researchers in fields as diverse as biochemistry, educational leadership, environmental science, social work, modern languages and psychology are investigating everything from STEM education for Hispanic students and their families to school security climate, neurotransmitter functionality, K-12 education inclusion for children with disabilities, enzyme inhibitors for memory loss and so much more.

Funders include a growing and varied list of federal, state, local and private sponsors including the National Science Foundation, National Institutes of Health, U.S. Department of Education and National Institute of Justice.

Ted Russo, director of Research and Sponsored Programs, reports the dollar amount is also nearly double what the University attracted just eight years ago, in FY 2012. Grants have seen steady growth each year during the last decade, and the University is off to a strong start for FY 2021 with $6 million in new funding announced in just the first few months.

Vice Provost for Research Scott Herness points out that the record breaking year coming after our R2 status, really solidifies our standing as a public research institution.

These grants show that our University is headed in exactly the right direction, increasing its research endeavors and our funding portfolio, says Herness. Its great for our faculty and for our students, who are getting lots of opportunities to participate in research.

Included in the FY 2020 funding:

In the first few months of FY 2021, the University has received approximately $6 million in new funding, including:

Story by Staff Writer Mary Barr Mann

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University Sees Record-Breaking Year In Grant Funding News Center - Montclaire News

Infinity BiologiX Expands Executive Team as Company Continues to Grow and Scale its Commercial Presence and Scientific Innovation – BioSpace

Oct. 8, 2020 12:00 UTC

Craig Eslinger joins as Vice President of Commercial Affairs and Mary Storella joins as Vice President and General Counsel

PISCATAWAY, N.J.--(BUSINESS WIRE)-- Today, Infinity BiologiX (IBX), a leading next-generation central laboratory providing sample collection and processing, storage, analytical services, and scientific and technical support, announced two key new hires as part of its executive team. The expanded executive team now includes Craig Eslinger, Vice President of Commercial Affairs, and Mary Storella, Vice President and General Counsel.

In his role as Vice President of Commercial Affairs, Eslinger will oversee the companys commercial presence as an independent entity following IBXs spin-off from Rutgers University in August. He will also be charged with building a world-class commercial team as the company expands into new markets. Eslinger comes to IBX with more than 30 years of experience in the pharmaceutical, biotech, medical device, public health, and contract research industries and is also scientifically trained in biochemistry and cyto/histopathology. Most recently he served as Vice President of Commercial Strategy at ICON and has worked for other industry-leading organizations including PPD, and SpaceLabs Medical.

Eslinger commented, With this role at IBX I have the unique opportunity to build something for a newly launched company which also has a rich history of experience in biobanking, bioprocessing, and analytics. He continued, Throughout its 21-year history the company has made a tremendous impact on bringing new products to market and helping healthcare providers use those medicines to effectively treat patients. Im thrilled to now broaden that impact by expanding our commercial presence to new markets and I look forward to working with this talented executive team in making IBX an industry leader.

As Vice President and General Counsel, Storella joins IBX with over 20 years of legal and business development experience in the healthcare industry. Most recently, she served as Vice President, Senior Counsel of Corporate Transactions at Celgene Corporation, where she was lead counsel on key strategic transactions. Prior to joining Celgene, Storella served on both the business development and legal teams at Merck & Co., Inc. as Executive Director, Business Development and Director, Corporate Transactions. She will play a pivotal role in establishing legal processes and best practices that support the companys rapid innovation and fast-paced business model.

I am excited and honored to join IBX at such a pivotal time in the growth of the company and at a time when the company is making such an impact in so many lives, commented Storella. I look forward to working with IBXs management team to build the legal framework necessary to support IBX as an independent company and to reach IBXs future strategic goals.

Robin Grimwood, IBX President and COO commented, IBX is pleased to be bringing on these seasoned professionals who will help lead the company during this important stage of strategic and aggressive growth. Craigs relationships across the industry and experience building teams are essential as we look for ways to expand our reach and grow our commercial organization quickly and at the highest quality possible. He continued, Marys unique combination of deep legal experience with a strong business development knowledge, with roles across pharmaceutical and life sciences, will be invaluable for IBX during this time of growth.

Eslinger and Storella join the current IBX executive team which, in addition to Grimwood, includes Dr. Andrew Brooks, Chief Executive and Scientific Officer, and Russell Hager, Executive VP and Strategic Operations.

About Infinity BiologiX

Infinity BiologiX (IBX) is a market-disrupting next-generation central laboratory. It collaborates with, and provides services to researchers and organizations in both the public and private sectors, including sample collection and processing, storage and analytical services, and scientific and technical support in both the research and clinical arenas. The company was previously RUCDR Infinite Biologics before spinning off from Rutgers University-New Brunswick in August 2020.

For more information, visit http://www.ibx.bio

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Infinity BiologiX Expands Executive Team as Company Continues to Grow and Scale its Commercial Presence and Scientific Innovation - BioSpace

Carmell Therapeutics Announces Appointment of Dr. Israel Nur as Scientific Advisor – Business Wire

PITTSBURGH--(BUSINESS WIRE)--Carmell Therapeutics, a pioneering company in the development and commercialization of innovative Plasma-based Bioactive Materials (PBMs) to accelerate bone and soft tissue healing, today announced that Dr. Israel Nur joined the company as a Scientific Advisor. Carmell Therapeutics has a unique biologic solution that addresses unmet needs in bone and soft tissue treatment and utilizes an innovative, proprietary platform that accelerates healing, reduces complications and enables patients to get back to their daily lives more quickly.

Israel brings a wealth of plasma derivatives experience and will provide invaluable guidance to Carmell as we continue to expand, which we are doing across the board, in fact, weve already doubled our footprint in Pittsburgh, said Randy Hubbell, President and Chief Executive at Carmell Therapeutics. We are thrilled to welcome Israel at this pivotal time for the organization as we advance our efforts to bring CT-101 Bone Healing Accelerant (BHA) to patients and healthcare providers.

Earlier this year, Carmell received Fast Track Designation from the U.S. Food and Drug Administration (FDA) for its BHA, which will help expedite the companys lead program to the goal of a Biologic License Application (BLA) approval.

Im looking forward to working with Carmell at this exciting time and sharing my expertise in biologic development of plasma-based materials, said Dr. Israel Nur. Bone Healing Acceleration is an important area that could make a considerable impact in the orthopedic/wound healing market and Carmell has the unique, transformational technology to make this a reality.

Dr. Israel Nur has over four decades of research and development (R&D) in biological experience, with a strong focus in plasma and serum derived product industry, in both the public and private sectors. He has proven expertise in developing biosurgical combination products. Most recently, Israel Nur was a senior director at Ethicon, leading the Manufacturing Scientific Team. Before that, he was managing the Ethicon Biosurgery R&D research and innovation team. Prior to the acquisition of Omrix biopharmaceuticals Inc. by JNJ, Dr. Nur was VP, R&D and one of the founders of Omrix. He also developed a line of plasma derived products, including the Intravenous immunoglobulin (OmriGam). During the early 2000s, under his leadership and with the collaboration of the Centers for Disease Control and Prevention (CDC), National Institutes of Health (NIH), Israel Defense Forces (IDF), the US Army and the Ministry of Defense, Omrix developed and manufactured a line of biodefense and bioterrorism products. Before joining the industry, Dr. Nur was a Visiting Fellow, Laboratory of Biochemical Pharmacology, National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), NIH, in Bethesda, Maryland. He started his career in NIH as a research fellow in National Institute of Allergy and Infectious Diseases (NIAID) in Fort Dietrich, Frederick MD.

Dr. Nur is an author of 53 publications in peer review journals and an inventor of more than 40 patents. He earned a Doctor of Philosophy in Biochemistry and a Master of Science in Microbiology from The Hebrew University of Jerusalem in Israel.

About Carmells PBM Technology Platform

Carmell Therapeutics unique PBM technology platform can be delivered in multiple formats to the site of injury from putties to pastes to surgical screws. A proprietary manufacturing process ensures product safety and that bioactive regenerative factors are delivered as the product degrades allowing for optimal healing. Carmell currently has two PBM products in development a Bone Healing Accelerant and a Tissue Healing Accelerant.

About Carmell Therapeutics

Carmell Therapeutics (Carmell) is addressing the burden of bone and tissue healing with its proprietary Plasma-based Bioactive Material (PBM) technology, designed to improve patient outcomes and reduce health care costs. Carmells transformational biologic will have significant impact on important therapeutic areas with many unmet clinical needs such as trauma fixation healing, spine fusion, sports medicine, dental bone regrowth, wound care, aesthetic medicine and animal health. For more information, please visit http://www.carmellrx.com.

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Carmell Therapeutics Announces Appointment of Dr. Israel Nur as Scientific Advisor - Business Wire

Endocannabinoids in the body can help fight intestinal infections – News-Medical.Net

Reviewed by Emily Henderson, B.Sc.Oct 7 2020

Endocannabinoids, signaling molecules produced in the body that share features with chemicals found in marijuana, can shut down genes needed for some pathogenic intestinal bacteria to colonize, multiply, and cause disease, new research led by UT Southwestern scientists shows.

The findings, published online today in Cell, could help explain why the cannabis plant - the most potent part of which is marijuana - can lessen the symptoms of various bowel conditions and may eventually lead to new ways to fight gastrointestinal infections.

Discovered in 1992, endocannabinoids are lipid-based neurotransmitters that play a variety of roles in the body, including regulating immunity, appetite, and mood. Cannabis and its derivatives have long been used to relieve chronic gastrointestinal conditions, including irritable bowel syndrome and inflammatory bowel disease. Studies have shown that dysregulation of the body's endocannabinoid system can lead to intestinal inflammation and affect the makeup of gut microbiota, the population of different bacterial species that inhabit the digestive tract.

However, study leader Vanessa Sperandio, Ph.D., professor of microbiology and biochemistry at UTSW, says it's been unknown whether endocannabinoids affect susceptibility to pathogenic gastrointestinal infections.

To help answer this question, Sperandio and her colleagues worked with mice genetically altered to overproduce the potent mammalian endocannabinoid 2-arachidonoyl glycerol (2-AG) in various organs, including the intestines. When the researchers infected these animals and their unmodified littermates with Citrobacter rodentium, a bacterial pathogen that attacks the colon and causes marked inflammation and diarrhea, the mutant mice developed only mild symptoms compared with the more extreme gastrointestinal distress exhibited by their littermates.

Examination of the mutant animals' colons showed far lower inflammation and signs of infection. These mice also had significantly lower fecal loads of C. rodentium bacteria and cleared their infection days faster than their unmodified littermates. Treating genetically unmodified animals with a drug that raised levels of 2-AG in the intestines produced similar positive effects.

Sperandio's team found that increased levels of 2-AG could also attenuate Salmonella typhimurium infections in mice and impede enterohemorrhagic Escherichia coli - a particularly dangerous gastrointestinal bacteria that infects humans - in order to express the virulence traits needed for a successful infection.

Conversely, when the researchers treated mammalian cells in petri dishes with tetrahydrolipstatin, a Food and Drug Administration-approved compound sold commercially as Alli that inhibits 2-AG production, they became more susceptible to the bacterial pathogens.

Further experiments showed that 2-AG exerted these effects on C. rodentium, S. typhimurium, and E. coli by blocking a bacterial receptor known as QseC. When this receptor senses the host signaling molecules epinephrine and norepinephrine, it triggers a molecular cascade necessary to establish infection. Plugging this receptor with 2-AG prevents this virulence program from activating, Sperandio explains, helping to protect against infection.

Sperandio notes that these findings could help explain some of the effects of cannabis use on inflammatory bowel conditions. Although studies have shown that cannabis can lower inflammation, recent research has shown that these conditions also tend to have a bacterial component that might be positively affected by plant cannabinoids.

In addition, cannabis compounds or synthetic derivatives could eventually help patients kick intestinal bacterial infections without antibiotics. This could be particularly useful for infections caused by enterohemorrhagic Escherichia coli, Sperandio says, which produces a deadly toxin when it's treated with antibiotics, rendering these drugs not only counterproductive but extremely dangerous. Because many virulent bacteria that colonize areas elsewhere in the body also have the QseC receptor, she adds, this strategy could be used more broadly to fight a variety of infections.

By harnessing the power of natural compounds produced in the body and in plants, we may eventually treat infections in a whole new way."

Vanessa Sperandio, Ph.D., professor of microbiology and biochemistry at UTSW

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Endocannabinoids in the body can help fight intestinal infections - News-Medical.Net

Synthace Announces the Launch of New Product Helping Scientists Execute and Scale Key Assays – BioSpace

Oct. 7, 2020 08:00 UTC

BOSTON & LONDON--(BUSINESS WIRE)-- Synthace Ltd, the company behind Antha, the cloud-based software platform for automating and improving the success rate of biological processes, has launched a new software capability for streamlining a fundamental workhorse of biochemistry: the enzyme-linked immunosorbent assay (ELISA). Antha now allows researchers to flexibly design and execute automated ELISA protocols and automatically gather, structure, and analyze the data in an accessible, in-depth format, saving researchers valuable time from design to data acquisition.

A Powerful Detection Tool

ELISA protocols are ubiquitous in life science research but feature prominently in drug discovery, pathology (plant and animal), medical diagnostics, and quality control. Essentially, ELISAs use specific antibodies, like those generated by our immune system, to detect antigens and give off a detectable signal using an enzyme such as horseradish peroxidase. Without these assays, scientists would not be able to rapidly identify viral proteins, like in the HIV test, or detect potential allergens or toxins in food. An ELISA test for coronavirus was one of the first antibody detection methods available at the outset of the pandemic.

Shifting Bottlenecks and Reducing Burdens

ELISA protocols have repetitive liquid handling steps that lend themselves easily to automation. These complex protocols are often performed on multiple pieces of equipment that are not always physically connected. This creates several barriers: the scientist must know how to program all of the machines involved as well as acquire and process the data from them individually. Ultimately, automating ELISA assays reduces the time spent on liquid handling, but creates two new bottlenecks in programming and data handling.

To reduce the programming and data handling burdens for researchers, Synthaces Antha acts as a single point of contact to perform the assay and acquire results. Antha is device-agnostic, with an intuitive user interface that allows scientists to design a flexible, end-to-end protocol and test it step-by-step in silico before sending it to the machines involved.

Changing How We Gather Data

In addition to showing the user a preview of the experiment, Antha automatically gathers tracks and structures data generated during the assays, even from non-integrated devices. At the conclusion of the protocol, Antha will generate a complete data analysis and visualization of these data automatically, saving time and resources spent gathering data and formatting it manually.

Clients trialing the new ELISA feature in Antha reported:

ELISAs are a critical assay across many fields within life science. As highly sensitive assays, they require precision and reproducibility that automation can provide. Flexible end-to-end approaches for ELISAs help scale key assays across many sectors, including biopharmaceutical development.

This addition to our Antha platform will enable scientists to perform key assays reliably and reproducibly at scale. Most importantly, this will allow scientists to spend less time in the lab, enabling them to design better experiments, explore new insights, and ultimately increase the impact of their research, concluded Dr. Tim Fell, CEO of Synthace.

Join the Synthace team on Friday, 16th October at 3pm BST / 10am EDT for a live demo to learn more about Antha-powered ELISAs and to ask our experts about automation, Antha, and more!

To learn more about automating ELISA protocols and getting the most from your data, visit: https://www.synthace.com/our-protocols/elisa-detail/

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About Synthace

Based in London, UK, and Boston, the US, Synthace is accelerating biological discovery & optimization through computer-aided biology. Our cloud software platform, Antha, empowers biologists by enabling them to flexibly program their lab automation without the need to code. The graphical user interface has been designed by biologists for biologists, intuitively enabling them to automate their whole experiment from planning to execution, data collection, and analysis. Antha is the cornerstone of the lab of the future, seamlessly connecting the digital realm of data with the physical of lab automation and wet-lab biology, automatically collecting and structuring data to accelerate biological understanding.

Synthace is unlocking the potential of biology for humankind and our environment. Synthace works with biopharmaceutical companies, and in 2016 was recognized by the World Economic Forum as a Technology Pioneer that is helping shape the Fourth Industrial Revolution, and in 2018 as a cool vendor by Gartner.

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Synthace Announces the Launch of New Product Helping Scientists Execute and Scale Key Assays - BioSpace

Rare genetic disease of the nervous and heart system discovered in children – Euro Weekly News

A rare genetic disease of the nervous and heart system has been discovered in children.

RESEARCHERS from Idibell and Hospital Sant Joan de Du in Barcelona have discovered a new severe rare genetic disease of metabolism that affects children and is characterised by problems in brain and heart development.

The gene that causes the disease, SHMT2, has been identified through the analysis of the genome of five patients -three Spanish, one French and one American.

The study of patients from overseas was made possible by the GeneMatcher platform, which connects clinicians and researchers from all over the world interested in the study of the same genes.

Children with SHMT2 deficiencies suffer from cognitive development problems, motor disorders and progressive heart disease that may even need transplantation.

To analyse the genome, the Idibell team developed sophisticated algorithms aimed at identifying the DNA changes in the genes most likely to cause disease.

The SHMT2 gene directs the production of an enzyme that controls the metabolism of folic acid and amino acids, essential elements to form proteins, with a key function in the development of the brain.

In the patients cells obtained through skin biopsy, the researchers have been able to determine the altered function by measuring the metabolites of the pathway in the biochemistry laboratory of the Hospital Sant Joan de Du (HSJD).

This discovery has been carried out by the team led by the geneticist and researcher Aurora Pujol.

Thanks to genomic medicine we can diagnose patients who have been unresponsive for many years, and better understand the mechanisms that govern essential biochemical reactions and the development of organs and tissues, she explained.

ngels Garca-Cazorla, a neuropediatrician who controls the three diagnosed patients and co-leader of the research, adds that Since these are known biochemical pathways, we are working on experimental treatments to supplement the deficient metabolites with the aim of improving the quality of life of the patients.

On the other hand, the team of researchers has also found alterations in the mitochondria, the organelles responsible for energy production and essential for most of the biochemical functions essential to life.

The study, published in the scientific journal Acta Neuropathologica and financed by funds from the Carlos III Health Institute, Ciberer and the project of undiagnosed neurological diseases of Catalonia, URD-Cat, identifies the gene that causes the disease, SHMT2, and opens the way to work on experimental treatments that will improve the lives of patients.

Thank you for reading this article Rare genetic disease of the nervous and heart system discovered in children.

Euro Weekly Newscontinues to bring you a range of News that doesnt cost you anything but your internet connection. Whether its Local Spanish News or International Entertainment News, weve got you covered!

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Rare genetic disease of the nervous and heart system discovered in children - Euro Weekly News

UConn Health Researcher Receives Patent for Cancer-fighting Antibody – UConn Today

UConn Health professor of cell biology Kevin Claffey recently received a patent for a novel antibody designed to target an important cancer cell membrane protein.

Heat Shock Protein 90 (Hsp90) plays an important role in cancer cell proliferation. Hsp90 is a chaperone protein that helps other proteins fold properly and stabilizes many proteins, including those required for tumor growth. Hsp90 is integral to the survival of the cells it assists. Cancer cells are more dependent on elevated levels of Hsp90 than healthy, non-cancerous cells making it an attractive target for therapies.

Claffey has derived antibodies produced in breast cancer patients lymph nodes that specifically target this protein on cancer cell membranes. These biological antibodies directly and specifically target only tumor cells rather than all cells that have Hsp90 on their surface.

The antibody HCAb2, which occurs naturally in cancer patients, specifically targets cancer cells Hsp90 proteins. Claffey used this biological antibody as a template to develop a synthetic version which could be a potent treatment for multiple kinds of cancer.

Other antibodies used in cancer treatment target signally receptors on the surface of tumor cells. However, these receptors are also essential for normal cell functioning leading to a host of adverse side effects.

While there have been many attempts to develop a drug that targets Hsp90, this is the first time a researcher has found antibodies that bind specifically to the tumor and the selectively induced stress protein.

Claffeys molecule has demonstrated the potential to inhibit Hsp90 selectively for melanoma, bladder and ovarian cancer types.

Related to this technology, Claffey has developed a platform for cancer antigen discovery that applies a unique biochemistry and molecular biology technology. This platform recovers antibodies from patients and identifies the cancer proteins that their own immune system has targeted as abnormal. This platform-based method can therefore isolate and identify tumor-specific antigens as well as patient-derived single domain antibodies specific to those antigens. By using this platform, Claffey found the HSP90-beta isoform that is inadvertently present on the extracellular face of highly metabolic cancer cells, and thus presents a cancer-selective target for antibodies which can then be incorporated into engineered T-cell therapies, such as CAR-T cells.

The platform was validated using materials available to the PI from late stage metastatic breast cancer patients; breast cancer patients; melanoma patients; and breast cancer patient sentinel lymph nodes. For more information about the technology and partnering opportunities, contact Amit Kumar (a.kumar@uconn.edu).

Claffey holds a Ph.D. in biochemistry and molecular biology from Boston University. He completed his postdoctoral training at the Dana-Faber Cancer Institute and Harvard Medical School Department of Biological Chemistry and Molecular Pharmacology. His research focuses on pre-clinical models of breast cancer, targeting angiogenesis and VEGF-dependent mechanisms.

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UConn Health Researcher Receives Patent for Cancer-fighting Antibody - UConn Today

Biochemistry to boost garlic breath and canine COVID-19 detection – Chemical & Engineering News

Good news for garlic lovers

Booster of flavor, repeller of vampires, stinker of breath. Garlic has enhanced our cooking for thousands of years by adding different flavorful sulfur-containing compounds to our dishes. The punchy allium has also been a folk remedy for infections, including plagues and other medical complaints, for almost as long. But even with all we know about it, the humble garlic clove is still giving up some sulfurous secrets.

At Virginia Tech, graduate student Hannah Valentino has picked apart a previously unknown pathway to one of the key flavor compounds in garlic, allicin (J. Biol. Chem. 2020, DOI: 10.1074/jbc.RA120.014484). Allicin is the flavorful compound with a characteristic smell thats released when you cut or crush raw garlic. Somewhat unstable, allicin will break down over time, or with cooking, to create the other smelly compounds that many people find alluring in food but less so on the breath.

Trying to understand the biosynthesis of this stinky compound, Valentino found an enzyme that oxygenates allyl mercaptan to form allyl sulfenic acid. Two molecules of the allyl sulfenic acid then condense to form allicin.

In a press release about the paper, Valentinos mentor Pablo Sobrado suggests that understanding how the enzyme creates garlicky flavor compounds could help researchers develop new garlic breeds with different allicin levels. That could help farmers grow garlic they know will have a receptive audience: consumers in the future could buy garlic bulbs with levels of the flavorful compound that suit their tastes.

For now, though, if you are more worried about stinky breath than keeping vampires away, Harold McGees On Food and Cooking: The Science and Lore of the Kitchen may help. Residual thiols in the mouth, McGee writes, can be transformed into odorless molecules by the browning enzymes in many raw fruits and vegetables. His adviceeating a salad or apple should remove garlics offensive odors from your exhalations.

While we know a lot about the smell of garlic, researchers still havent pinned down the source of the novel coronaviruss scent. But airports are now using scent-trained canines for dog-based diagnostics.

In July, Newscripts reported that researchers were having success training doggy detectives to sniff out people infected with COVID-19. But those tests were in the lab and based mostly on smelling urine or saliva from infected people. Not ideal for day-to-day testing in a public setting.

The article prompted a representative from the United Arab Emirates Ministry of Interior to contact Newscripts via email. Since August, the note says, scent-detecting dogs have been sniffing out COVID-19 at airports, including in the busy hub of Dubai. Instead of taking saliva samples, which might be infectious, medical assistants at the UAE airports take sweat samples for dogs to sniff, which the representative says are completely safe for both the dogs and the medical assistants who are administering the test. In late September, COVID-19-detecting doggos started working at Helsinkis airport, where they are also sniffing swipes from passengers skin rather than the passengers themselves.

It still isnt clear exactly what combination of metabolites and scent molecules gives people infected with SARS-CoV-2 their distinctive scent. But Newscripts hopes that researchers can find that elusive eau de COVID-19. Until that is figured out, were glad these pooch sleuths are helping out and we hope these good puppers get lots of treats at the end of a tough day at the office. That always works for the Newscripts gang.

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Biochemistry to boost garlic breath and canine COVID-19 detection - Chemical & Engineering News

Li-Jun Ma Receives Joint Genome Institute Award for Fungi Research – UMass News and Media Relations

Professor Li-Jun Ma, biochemistry and molecular biology, has received support from the U.S. Department of Energys Joint Genome Institute (JGI) Community Science Program (CSP) to conduct in-depth research on a group of soil fungi, Fusaria, that are economically important because they devastate crops not only food but biofuel feedstocks. This is a collaborative project between principal investigator Ma and co-principal investigator Robert Proctor, a research microbiologist at the USDA Agricultural Research Services National Center for Agricultural Utilization.

Ma says that two of the top 10 plant pathogens are in the Fusariumfamily, based on a ranking by many molecular plant pathologists. For these new investigations, she will collaborate with Igor Grigoriev and his team at the Joint Genome Institute and Lawrence Berkeley National Laboratory. Other collaborators include evolutionary biologist David Geiser,director of the Fusarium Research Center at Penn State University; Kerry ODonnell, an expert on taxonomy and biological diversity of Fusarium; and Daren Brown, who has more than 20 years of experience in Fusarium research.

She says of the honor and opportunity, This is an exciting project. Im honored by this award and I always appreciate the consistent and reliable support from JGI to the research community.

The JGI CSP program provides the scientific community with access to high-throughput, high-quality sequencing, DNA synthesis, metabolomics and analysis capabilities that they might not otherwise have access to. For this project, JGI will allocate technical infrastructure support, such as characterizing 124 fungal samples via next-generation, long-read DNA and RNA sequencing techniques, according to the institute.

DOE also points out that because of their associations with plants, Fusariumspecies (fusaria) can profoundly impact bioenergy production and global carbon cycling. The great genetic diversity of the genus is also reflected in their genomes and there is a great interest in understanding the dynamics of Fusariumgenomes and their impacts on the host-plant interactions.

This funded project has two major components. One is to produce 50 high-quality genome assemblies that span the diversity in the genus. Im happy that the scope of the project covers the whole genus. Further, the scientists will also explore the functional impact of genome dynamics on Fusarium-plant interactions by investigating 96 transcription factors identified in Fusarium oxysporum using DNA affinity purified sequencing (DAP-seq) and single cell RNAseq of three carefully selected samples. I am excited by the opportunity to address some knowledge gaps using functional data to probe host-fungal interactions, Ma says.

This project is based on a system developed at the Ma lab enabling the dissection of interaction between Fusarium and plants in both harmful and beneficent ways. Ma explains that another facet of this work will involve isolating individual plant cells and sequencing each cell separately, which is a cutting-edge and highly informative technique not easily used in non-human biology studies. Through network analysis, researchers will be able to capture the action and characterize patterns of temporal and spatial fungal-plant interactions. One goal of this research is to seek ways to intervene to prevent the plants death, specifically to prevent the loss of plant-based biofuel feedstocks.

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Li-Jun Ma Receives Joint Genome Institute Award for Fungi Research - UMass News and Media Relations

Dust off the crystal ball: It’s time for STAT’s 2020 Nobel Prize predictions – STAT

The mistake Nobel Prize prognosticators yours truly included make is to look through the greatest hits of biochemistry, biology, and medicine (the areas STAT covers) nuclear hormone receptors! microRNAs! and figure (as last years prediction story did) one of those is due and deserving. The trouble is, as MITs Phillip Sharp, who shared the 1993 medicine Nobel, told me, There is just a lot of good science that will never get recognized.

So focusing on the greatest hits to forecast the science winners who will be announced next week is too simplistic. Theyre all contenders, but the smart money looks for other criteria. Like toggling between discoveries of what cells and molecules do and inventions of techniques that reveal what they do, or between disciplines, or (for medicine) between something that directly cures patients and something about the wonders of living cells.

By that criteria, it might be a techniques turn, since the last such winner in medicine was for turning adult cells into stem cells, in 2012. Could this be the year for optogenetics, which allows brain scientists to control genetically modified neurons with light? I dont think optogenetics has made a big enough impact outside of neuroscience yet, said cancer biologist Jason Sheltzer of Cold Spring Harbor Laboratory, who dabbles in Nobel predictions, but who knows.

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The last Nobel for DNA sequencing was way back in 1980, he pointed out, and since then we have seen the complete sequencing of the human genome, one of humanitys towering achievements. (Sheltzer correctly predicted 2018s medicine Nobel for immuno-oncology pioneer James Allison. The Human Genome Project could win it for the officials who led it, like Francis Collins of the National Institutes of Health and Eric Lander of the Broad Institute. Would Craig Venter, who led a competing private effort, make it to Stockholm, too? Let the betting commence!

Just to be clear, science Nobels arent chosen all that, well, scientifically. For medicine, a five-member Nobel Committee for Physiology or Medicine at Swedens Karolinska Institute sifts nominations and selects candidates. The 50-member Nobel Assembly votes, this year on Oct. 5. So you can get head-scratchers from, say, 20-18-12 or similarly split votes if, say, genetics fanciers split their votes among two contenders. (If you want to know if that happened, hang on until 2070: Nobel records are secret and sealed for 50 years.) For chemistry, chosen on Oct. 7 this year, the five-member Nobel Committee of the Royal Swedish Academy of Sciences likewise sifts nominations and recommends finalists to the academy for a vote.

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Besides invention and discovery switching off in the medicine Nobel, there certainly seems to be periodicity in terms of disciplines taking turns, said David Pendlebury of data company Clarivate Analytics. He has made 54 correct Nobel predictions (usually in the wrong year, but in 29 cases within just two) since 2002 by analyzing how often a scientists key papers are cited by peers and awarded predictive prizes like the Lasker or Gairdner awards.

Neuroscience won the medicine Nobel in 2000, 2004, 2014, and 2017, immunology in 2008, 2011, and 2018, for instance. Infectious disease and cancer win every decade or two, and so are probably also-rans for 2020. Thats why STAT said last year that the 2018 medicine award for immuno-oncology made cancer an unlikely 2019 winner. Yet William Kaelin, Peter Ratcliffe, and Gregg Semenza won for discovering how cells sense and adapt to oxygen availability, through gene regulation, which is tangentially related to cancer. Go figure.

For the medicine prize, periodicity also applies to toggling between super-basic molecular biology and stuff that actually cures people (not year by year, but generally). Last years award for how cells sense changing oxygen levels was pretty abstruse and might shape this years choice.

Prizes with a more clinical focus have been 2003 (MRI), 2005 (H. pylori and ulcers), 2008 (HIV), 2015 (roundworm and malaria therapy), and 2018 (immuno-oncology), [so] maybe a clinical type of prize this year, [such as] hepatitis C treatment, brain stimulation for Parkinsons, cochlear implant, statins Pendlebury said. We wouldnt be surprised at a hep C win for Charles Rice of Rockefeller University and Ralf Bartenschlager of Heidelberg University (2016 Lasker winners) for the super-basic discoveries that led to drugs that cure the viral disease.

Like Pendlebury, Sheltzer believes in predictive prizes. I looked back at the last 20 years of Nobel Prizes in medicine/physiology, he said. Eighty-three percent of them had won at least one of three prizes before the Nobel: the Lasker, the Gairdner, or the Horwitz Prize. Of the five people who have recently won all three, only one works in a field so far ignored by the Nobel committees, he said: Yale School of Medicines Arthur Horwich, a pioneer of protein folding and chaperone proteins. In addition to the Gairdner in 2004, Horwitz in 2008, and Lasker in 2011, he received the $3 million Breakthrough Prize in 2019. So thats guess #1, Sheltzer said.

Unless Weve had a few [medicine] awards that you could classify as cell biology recently oxygen sensing in 2019, autophagy in 2016, even immune regulation is kinda cell biological, Sheltzer acknowledged. So I think a genetics award is more likely than one to Horwich, whose discoveries about how cells fold the proteins they synthesize are central to the understanding of life. STATs nickel says look no further than the 2015 Lasker Basic Medical Research Award: It honored Evelyn Witkin of Rutgers and Stephen Elledge of Harvard for discovering how DNA repairs itself after being damaged.

Might David Allis of Rockefeller and Michael Grunstein of UCLA finally get the call to Stockholm? They discovered one way genes are activated (through proteins called histones). Theyve shared a 2018 Lasker and a 2016 Gruber Prize in Genetics, and basically launched the hot field of epigenetics. I think a prize related to epigenetic control of transcription by DNA and histone modifications could be in order, Kaelin told STAT.

For physiology or medicine, Pendlebury likes Pamela Bjorkman of Caltech and Jack Strominger of Harvard for determining the structure and function of major histocompatibility complex (MHC) proteins, a landmark discovery that has contributed to drug and vaccine development, as well as Yusuke Nakamura of the University of Tokyo for genome-wide association studies that led to personalized approaches to cancer treatment (personally, we doubt this is cancers year again), and Huda Zoghbi of Baylor College of Medicine for work on the origin of neurological disorders.

In chemistry, Pendlebury likes Moungi Bawendi of MIT, Christopher Murray of the University of Pennsylvania, and Taeghwan Hyeon of Seoul National University for synthesizing nanocrystals, a cool new way to deliver drugs, and Makoto Fujita of the University of Tokyo for discovering supramolecular chemistry, in which lab-made molecules self-assemble by emulating how nature makes them. That has some overlap with Frances Arnolds 2018 Nobel for chemistry, so were skeptical, but who knows?

Lets address the elephant in the Nobel anteroom, and the chatter that the revolutionary genome editing technique CRISPR will win for chemistry. (Its value in medicine is still TBD, but its stellar biochemistry.)

The discovery of the CRISPR-Cas9 system is certainly worthy of a Nobel Prize, Kaelin said. I suspect the challenge here will be to get the attribution right. Perhaps there could be a chemistry prize for the basic mechanism and a medicine prize for application to somatic gene editing in human cells.

By attribution, he means, who gets CRISPR credit? Only three people can share a Nobel. But CRISPR has more mothers and fathers than that. Jennifer Doudna of the University of California, Berkeley, and her collaborator Emmanuelle Charpentier have won a slew of predictive prizes for their work turning a bacterial immune system into a DNA editor, but dark horse Virginijus iknys of Vilnius University shared the 2018 $1 million Kavli Prize in nanoscience for his CRISPR work. And Feng Zhang of the Broad Institute is more widely cited than the above three, Pendlebury said, a marker of what colleagues think.

CRISPR citations built up more to Feng Zheng et al. than to Doudna and Charpentier, but I dont think that matters as much as judgments about priority claim, Pendlebury said. There are more than three to credit and I do think that is problematic. Bad feelings are not something the Nobel Assembly wants to generate, I am sure.

CRISPR will win, said CSHLs Sheltzer. Its a question of when, not if. Zhang/Doudna/Charpentier/Horvath/Barrangou shared the Gairdner. Pick 2 or 3 of them?

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Dust off the crystal ball: It's time for STAT's 2020 Nobel Prize predictions - STAT