All posts by medical

Hypoglossal nerve stimulation offers hope for pediatric Down syndrome patients with OSA – News-Medical.Net

While Obstructive Sleep Apnea (OSA) affects about five percent of the general pediatric population, 80 percent of children with Down syndrome experience OSA. Continual OSA results in poor health, including disruptions to cognitive development and functioning, leading physician-researchers from Mass General Brigham to investigate better methods to treat these patients as early as possible to maximize their health outcomes.

In a new case study published April 11 in Pediatrics, they report on a 4-year-old boy with Down syndrome and OSA who underwent a procedure to implant a hypoglossal nerve stimulation device, and experienced improvements thereafter.

Currently, adenoidectomies and tonsillectomies are among first-line treatments for pediatric OSA, however they are not always effective for children with Down syndrome because OSA can recur. Additionally, continuous positive airway pressure (CPAP) treatment, which streams compressed air into airways during sleep, is often not tolerated by children with Down syndrome due to sensory sensitivities.

The hypoglossal nerve stimulation device by Inspire has been an option increasingly used to treat OSA in adults since its 2014 FDA-approval. The device detects when the airway is blocked and sends an electrical pulse to the hypoglossal nerve that controls the tongue, causing it to move forward in the mouth, thereby opening the airway. Positive treatment data in adults first led lead study author Christopher Hartnick, MD, director of Pediatric Otolaryngology at Mass Eye and Ear, to wonder whether the treatment may help his patients with Down syndrome whose lives were impacted by OSA. With Mass General Brigham colleague Brian Skotko, MD, MPP, the Emma Campbell Endowed Chair on Down Syndrome at Massachusetts General Hospital, they organized a clinical trial looking at the safety and effectiveness of the procedure in children between the ages of 10 and 22 with Down syndrome. Results of a 42-patient trial showing the benefits and safety of the procedure were published in 2022, leading to FDA approval for the device for adolescents with Down syndrome over the age of 13 nearly a year later.

These results spurred the researchers to examine whether the procedure could benefit younger children who are impacted by the physical and neurocognitive effects of OSA during pivotal developmental years.

Hartnick and Skotko identified a patient candidate, 4-year-old Theodore "Theo" Scott of Knoxville, Tenn., who had been on CPAP therapy since he was 1 year old.

After Hartnick and his team had extensive discussions about potential risks with colleagues in other medical specialties and Theo's parents, Rachel and Andrew Scott, a surgery took place in May 2023. The surgery was successful without complications, and the procedure was modified to allow for Theo's continued growth.

After one month, Theo experienced an improvement in sleep, and his obstructive apnea-hypopnea index (a measure of apnea severity) decreased by 40 percent. Additional follow-up care will take place for Theo to monitor effects of the procedure on neurocognition and surveillance of the device as he grows.

"The most significant change we have seen is the amount of sleep Theo is now getting, routinely over 10 hours a night versus what we experienced with CPAP where he would pull his mask off up to fifteen times a night. Theo sleeping through the night has also benefitted us as parents since we would need to get up and assist him, and we could each feel the toll poor sleep was taking on our health," Rachel and Andrew Scott said in a statement. "We have also noticed Theo wakes up more easily in the morning and has a longer attention span than before the surgery, and his language development has accelerated from one-word statements to multiple word sentences. This procedure has absolutely been a game-changing intervention in Theo's life and in our family's."

Hartnick and Skotko are currently leading an NIH-sponsored 4-year trial examining the impact of upper airway stimulation on neurocognition and language in young patients with Down syndrome.

Children with Down syndrome are disproportionally affected by obstructive sleep apnea and often don't benefit from traditional interventions, and research shows this impacts their cognitive development and IQ scores. The potential long-term impact on neurocognition was a major driver of our team and the family's shared decision-making to pursue this treatment, and this case suggests it may be a possible option for some families."

Christopher Hartnick, MD,Director of Pediatric Otolaryngology at Mass Eye and Ear

"In our Down Syndrome Program, I see first-hand how frustrated families become when their child with Down syndrome runs out of options to treat significant sleep apnea," said Skotko. "Theo now opens up a new frontier for research and potential clinical care."

Source:

Journal reference:

Wasserman, I.,et al.(2024) Hypoglossal Nerve Stimulation for Obstructive Sleep Apnea in a Young Child With Down Syndrome. Pediatrics. doi.org/10.1542/peds.2023-063330.

Read more from the original source:

Hypoglossal nerve stimulation offers hope for pediatric Down syndrome patients with OSA - News-Medical.Net

Receptor targeting to identify medications for pediatric mental health concerns – Contemporary Pediatrics

In this Contemporary Pediatrics video interview, Joanne M. Howard, MSN, MA, RN, CPNP-PC, PMHS & Anne Craig, MSN, RN, CPNP-PC, of C.S. Mott Children's Hospital, Ann Arbor, Michigan, highlight their session titled "Pediatric Psychopharmacology: Understanding Receptor Targets to Identify Medications That May Work Best for Children and Teens," presented at the 2024 NAPNAP National Conference.

Their session explored psychopharmacologic agents used in the pediatric population, with a focus on their interactions with receptor targets in the brain and body.

"[We wanted to] take a deeper dive into the medication management for pediatric mental health disorders and empower our [colleagues] out there in the community to maybe be more comfortable or knowledgable about managing things like depression, anxiety, aggressive behaviors, or ADHD," said Howard.

"We gave an overview of what neurotransmitters are, and then focused on the neurotransmitters monoamines that are implicated in psychopathology or development of many psychiatric disorders," added Craig. "We wanted to approach it from what [a particular] medication is targeting, what receptors, and how does that translate into a clinical effect."

Click here for more NAPNAP coverage.

Read more:

Receptor targeting to identify medications for pediatric mental health concerns - Contemporary Pediatrics

Efforts to reduce wait times for developmental evaluations – Baylor College of Medicine | BCM

In the state of Texas, there are over 500,000 children and adults with IDD (intellectual or developmental disabilities inclusive of autism spectrum disorder (ASD), intellectual disability, and related conditions). Additionally, thousands more have learning and/or attention difficulties (ADHD, dyslexia, etc.).

Children referred to a developmental-behavioral pediatrician often wait well over a year for a developmental evaluation. This delay in assessment is even more problematic in light of evidence that has demonstrated the importance of early recognition and intervention in achieving optimal outcomes for children with developmental diagnoses such as autism or intellectual disability.

This problem is not unique to Texas. There are just over 700 board-certified developmental-behavioral pediatricians nationally (compared to nearly 3,000 pediatric cardiologists in 2021, for example) and wait times are similar for developmental pediatrics clinics nationwide. This problem does not end after childhood. In fact, even fewer physicians providing primary care for adults have received training in healthcare transition or adult care for individuals with intellectual and developmental disabilities (IDD) and autism.

The Maternal Child Health Bureau (MCHB), a branch of the Health and Resource Services Administration (HRSA), has responded to this workforce crisis by offering a select number of Developmental-Behavioral Pediatrics (DBP) Training Grants to academic medical institutions across the nation. For the first time, Baylor College of Medicine is the recipient of a DBP training grant as of July 2023.

Project directors Dr. Holly Harris, assistant professor of pediatrics in the section of developmental and behavioral pediatrics, and Dr. Jordan Kemere, assistant professor of internal medicine in the section of transition medicine, were awarded just over 1.3 million to be distributed over the 5-year grant cycle. The majority of the activities for the DBP Training Grant are housed at the Meyer Center for Developmental Pediatrics and Autism at Texas Childrens Hospital, in addition to the Transition Medicine Clinic at Baylor and Texas Childrens. DBP trainees and faculty also interface with the Harris Health System to provide developmental evaluations to children at the Pasadena Pediatric and Adolescent Health Center.

The grant objectives are to train the next generation of leaders in DBP, to provide continuing education and technical assistance to providers and agencies caring for individuals with IDD/autism, and ultimately increase access to care.

This funding will allow Baylor to expand its DBP Fellowship program by increasing the number of incoming trainees and by facilitating more robust recruitment activities. The funding also supports a novel one-year Transition Lifespan Fellowship, a nationally unique offering that trains a physician specifically in healthcare transition and lifespan care for individuals with IDD and autism, a priority within the Autism Cares Act of 2019 and HRSA/MCHBs Blueprint for change.

Along with training subspecialists, the grant funding also supports a unique training opportunity for primary care pediatricians (PCPs) interested in honing their skills in developmental assessment. This training enables a pediatrician to confidently diagnose and provide appropriate recommendations for straightforward cases of developmental conditions, such as autism or intellectual disability, in the medical home. Not only are children and families able to work with a provider with whom they have had continuity of care, but they also are able to immediately access appropriate interventions without waiting for a specialist assessment. Thus far, there has been overwhelming interest in this position from primary care pediatricians across the Houston area.

The grant faculty are also planning to conduct needs assessments of local community agencies to determine how to best support individuals in the community who are providing care for individuals with IDD and autism. Surveys with underserved populations, including Spanish-speaking families and transition-aged youth, are also underway. These will allow us to understand the needs of our population better so that we can construct our educational offerings accordingly. The DBP workforce crisis will clearly take time to address, but investigators at Baylor are excited to play a part in moving the needle through education and, ultimately, increased access to care for individuals and families of individuals with IDD.

By Dr. Holly Harris, assistant professor of pediatrics, program director, developmental-behavioral pediatrics fellowship at Texas Childrens Hospital/Baylor College of Medicine and Dr. Kathryn Jordan Kemere, assistant professor of medicine transition medicine at Baylor College of Medicine

See the article here:

Efforts to reduce wait times for developmental evaluations - Baylor College of Medicine | BCM

Nasal oxidative stress mediating the effects of colder temperature exposure on pediatric asthma symptoms | Pediatric … – Nature.com

Barrett, C. et al. Eat or Heat: Fuel Poverty and Childhood Respiratory Health. Lancet Respir. Med. 10, 229 (2022).

Article PubMed Google Scholar

Hyrks-Palmu, H. et al. Cold Weather Increases Respiratory Symptoms and Functional Disability Especially among Patients with Asthma and Allergic Rhinitis. Sci. Rep. 8, 18 (2018).

Article Google Scholar

He, L. et al. Associations between Personal Apparent Temperature Exposures and Asthma Symptoms in Children with Asthma. PLoS One 18, e0293603 (2023).

Article CAS PubMed PubMed Central Google Scholar

Xu, Z. et al. Extreme Temperatures and Emergency Department Admissions for Childhood Asthma in Brisbane, Australia. Occup. Environ. Med. 70, 730735 (2013).

Article PubMed Google Scholar

Chen, Y. et al. Associations between Ambient Temperature and Adult Asthma Hospitalizations in Beijing, China: A Time-Stratified Case-Crossover Study. Respir. Res. 23, 112 (2022).

Article Google Scholar

Cohen, J., Agel, L., Barlow, M., Garfinkel, C. I. & White, I. Linking Arctic Variability and Change with Extreme Winter Weather in the United States. Science 373, 11161121 (2021).

Article PubMed Google Scholar

Nadeem, A., Raj, H. G. & Chhabra, S. K. Increased Oxidative Stress in Acute Exacerbations of Asthma. J. Asthma 42, 4550 (2005).

Article CAS PubMed Google Scholar

Strauss, R. H., McFadden, E. Jr, Ingram, R. Jr, Jaeger, J. J. & Stearns, D. R. Enhancement of Exercise-Induced Asthma by Cold Air. N. Engl. J. Med. 297, 743747 (1977).

Article CAS PubMed Google Scholar

Kaminsky, D. A., Bates, J. H. & Irvin, C. G. Effects of Cool, Dry Air Stimulation on Peripheral Lung Mechanics in Asthma. Am. J. Respir. Crit. Care Med. 162, 179186 (2000).

Article CAS PubMed Google Scholar

Deng, L. et al. High and Low Temperatures Aggravate Airway Inflammation of Asthma: Evidence in a Mouse Model. Environ. Pollut. 256, 113433 (2020).

Article CAS PubMed Google Scholar

Holguin, F. Oxidative Stress in Airway Diseases. Ann. Am. Thorac. Soc. 10, S150S157 (2013).

Article PubMed Google Scholar

DAmato, M. et al. The Impact of Cold on the Respiratory Tract and Its Consequences to Respiratory Health. Clin. Transl. Allergy 8, 18 (2018).

Article Google Scholar

Zeng, M. et al. Local and Systemic Oxidative Stress and Glucocorticoid Receptor Levels in Chronic Obstructive Pulmonary Disease Patients. Can. Respir. J. 20, 3541 (2013).

Article PubMed PubMed Central Google Scholar

He, L. et al. Malondialdehyde in Nasal Fluid: A Biomarker for Monitoring Asthma Control in Relation to Air Pollution Exposure. Environ. Sci. Technol. 54, 1140511413 (2020).

Article CAS PubMed Google Scholar

Cui, X. et al. Association between Bedroom Particulate Matter Filtration and Changes in Airway Pathophysiology in Children with Asthma. JAMA Pediatrics 174, 533542 (2020).

Article PubMed PubMed Central Google Scholar

He, L. et al. Associations of Personal Exposure to Air Pollutants with Airway Mechanics in Children with Asthma. Environ. Int. 138, 105647 (2020).

Article CAS PubMed Google Scholar

Ilyasova, D., Scarbrough, P. & Spasojevic, I. Urinary Biomarkers of Oxidative Status. Clin. Chim. Acta 413, 14461453 (2012).

Article PubMed PubMed Central Google Scholar

Khoubnasabjafari, M., Ansarin, K. & Jouyban, A. Salivary Malondialdehyde as an Oxidative Stress Biomarker in Oral and Systemic Diseases. J. Dent. Res. Dent. Clin. Dent. Prospects 10, 71 (2016).

Article PubMed PubMed Central Google Scholar

Gong, J. et al. Malondialdehyde in Exhaled Breath Condensate and Urine as a Biomarker of Air Pollution Induced Oxidative Stress. J. Exposure Sci. Environ. Epidemiol. 23, 322 (2013).

Article CAS Google Scholar

Valavanidis, A., Vlachogianni, T. & Fiotakis, C. 8-Hydroxy-2-Deoxyguanosine (8-Ohdg): A Critical Biomarker of Oxidative Stress and Carcinogenesis. J. Environ. Sci. Health Part C. 27, 120139 (2009).

Article CAS Google Scholar

He, L. et al. Effects of Personal Air Pollutant Exposure on Oxidative Stress: Potential Confounding by Natural Variation in Melatonin Levels. Int. J. Hyg. Environ. Health 223, 116123 (2020).

Article CAS PubMed Google Scholar

He, L., Liu, X. L. & Zhang, J. J. Simultaneous Quantification of Urinary 6Sulfatoxymelatonin and 8Hydroxy2Deoxyguanosine Using Liquid Chromatography-Tandem Mass Spectrometry. J. Chromatogr. B 1095, 119126 (2018).

Article CAS Google Scholar

Liu, A. H. et al. Development and Cross-Sectional Validation of the Childhood Asthma Control Test. J. Allergy Clin. Immunol. 119, 817825 (2007).

Article PubMed Google Scholar

Koolen, B. et al. Comparing Global Initiative for Asthma (Gina) Criteria with the Childhood Asthma Control Test (C-Act) and Asthma Control Test (Act). Eur. Respir. J. 38, 561566 (2011).

Article CAS PubMed Google Scholar

Schoemann, A. M., Boulton, A. J. & Short, S. D. Determining Power and Sample Size for Simple and Complex Mediation Models. Soc. Psychological Personal. Sci. 8, 379386 (2017).

Article Google Scholar

Cruz, A. A., Naclerio, R. M., Proud, D. & Togias, A. Epithelial Shedding Is Associated with Nasal Reactions to Cold, Dry Air. J. Allergy Clin. Immunol. 117, 13511358 (2006).

Article PubMed Google Scholar

Huang, D. et al. Cold Exposure Impairs Extracellular Vesicle SwarmMediated Nasal Antiviral Immunity. J. Allergy Clin. Immunol. 151, 509525.e508 (2023).

Article CAS PubMed Google Scholar

Lester, S. N. & Li, K. Toll-Like Receptors in Antiviral Innate Immunity. J. Mol. Biol. 426, 12461264 (2014).

Article CAS PubMed Google Scholar

Novak, N., Haberstok, J., Bieber, T. & Allam, J.-P. The Immune Privilege of the Oral Mucosa. Trends Mol. Med. 14, 191198 (2008).

Article CAS PubMed Google Scholar

Lin, Z., Sun, L., Li, L. & Jiang, S. Nasal Mucosa Is Much More Susceptible Than Oral Mucosa to Infection of SarsCov2 Omicron Subvariants: Wearing Nasal Masks Where Facial Masks Cannot Be Used. J. Med. Virol. 95, e28577 (2023).

Article CAS PubMed Google Scholar

Blagojevic, D. P., Grubor-Lajsic, G. N. & Spasic, M. B. Cold Defence Responses: The Role of Oxidative Stress. Front. Biosci. Scholar 3, 416427 (2011).

Article Google Scholar

Saadeh, C., Saadeh, C., Cross, B., Gaylor, M. & Griffith, M. Advantage of Impulse Oscillometry over Spirometry to Diagnose Chronic Obstructive Pulmonary Disease and Monitor Pulmonary Responses to Bronchodilators: An Observational Study. SAGE Open. Medicine 3, 2050312115578957 (2015).

Google Scholar

Guan, W.-j et al. Impulse Oscillometry in Adults with Bronchiectasis. Ann. Am. Thorac. Soc. 12, 657665 (2015).

Article PubMed Google Scholar

Nadeem, A. et al. Proteinase Activated Receptor2Mediated Dual Oxidase2 upRegulation Is Involved in Enhanced Airway Reactivity and Inflammation in a Mouse Model of Allergic Asthma. Immunology 145, 391403 (2015).

Article CAS PubMed PubMed Central Google Scholar

Read the original here:

Nasal oxidative stress mediating the effects of colder temperature exposure on pediatric asthma symptoms | Pediatric ... - Nature.com

Week in review: A new dermatology case study, and a new treatment for severe asthma – Contemporary Pediatrics

Thank you for visiting the Contemporary Pediatrics website. Take a look at some of our top stories from last week (Monday, April 8, to Friday, April 12, 2024), and click on each link to read and watch anything you may have missed.

1.) Young woman with tick bites presents with erythematous papules, headaches, and fatigue

A young woman with no significant past medical history returns from hiking with several white-spotted ticks and experiences erythematous papules, rashes, headaches, and fatigue. Whats the diagnosis?

Click here for the full case, differential diagnosis, and case diagnosis.

2.) FDA approves benralizumab for children aged 6 to 11 years with severe asthma

The FDA approval of benralizumab for patients ages 6 to 11 with asthma follows the conclusions of the phase 3 TATE study. Click here for full FDA approval details.

3.) FDA approves dolutegravir/lamivudine to treat HIV infection in adolescents

The indication is approved for those with no antiretroviral (ARV) treatment history or to replace current ARV regimen in those, "are virologically suppressed (HIV-1 RNA less than 50 copies/mL) on a stable ARV regimen with no history of treatment failure and no known substitutions associated with resistance to the individual components of [dolutegravir/lamivudine]," ViiV stated.

Click here for full approval details.

4.) Does vitamin C among pregnant smokers improve airway function trajectory in offspring?

"Our findings provide evidence for a direct association between maternal smoking during pregnancy and wheeze occurrence," wrote the authors.

Click here for the full article.

5.) Does acetaminophen intake during pregnancy influence childrens risk of neurodevelopmental disorders?

A recently published study in JAMA sought to determine if there is a link between acetaminophen use during pregnancy and childrens risk of developing autism, ADHD, or intellectual disabilities.

Click here for the full article.

Read more:

Week in review: A new dermatology case study, and a new treatment for severe asthma - Contemporary Pediatrics

Close Encounters of Skin and Nerve Cells – The Scientist

A tickly itch, a painful scratch, or the feeling of a refreshing breezethe skin is teaming with nerve endings that drive these sensations. Scientists are getting into the epidermis to explore how skin and nerve cells interact.

Peering through a microscope at skin tissue, researchers struggle to tease apart the intricate connections occurring inside tight bundles of skin and nerve cells.1 However, recent advances in microscopy have helped solve this intractable problem. Published in eLife, Nurcan eyler, a neurologist at the University of Wrzburg, and her colleagues used emerging imaging techniques to discover that nerve fibers not only weave around skin cells but also pass through them.2 The findings intimate a route by which skin cells transmit sensory signals to the nervous system.

The skin is basically the window to the outside, said Kathryn Albers, a neuroscientist at the University of Pittsburgh who was not involved with the work but reviewed the study. Despite this, scientists have long overlooked the role skin cells play in nerve stimulation. eyler hopes that their findings will open new doors for research. I think were at the beginning of changing minds, she said.

A chance discovery made by Christoph Erbacher, then a doctoral student in eylers laboratory, set the project in motion. He had started working on his PhD thesis on a completely different topic, eyler said. However, when Erbacher looked at skin tissue under the microscope, he noticed that nerve fibers did not just grow around skin cells but, to the whole teams surprise, tunneled straight through them. Eager to inspect these interactions in closer detail, the team turned to state-of-the-art imaging strategies that zoom deep inside cells to bring fine structures into view.

Continue reading below...

Structured illumination microscopy, a technique that takes multiple snapshots of a sample under different patterns of light, allowed eyler and her team to acquire super-resolution images of skin tissue. With the help of fluorescent antibodies that bind specifically to nerves, they located nerve tunnels passing through skin cells. Then, to capture the cells interior architecture, they used electron microscopy.3 The combination of the two strategies, called correlative light and electron microscopy (CLEM), allowed the researchers to see which architectural details corresponded to the fluorescently-stained nerve fibers.4

A single snapshot of a cell can only reveal so much. By imaging several layers in a sliver of tissue,the researchers could determine whether a nerve fiber tunneled through a cell rather than over or under it. They scrolled through cross-sections of the cell, starting at the base and moving up. All of a sudden, the fiber appears, and you can very clearly see youre in the middle of the cell, eyler said.

Examining the close-up architectural details afforded by CLEM, the researchers noticed that the tunneling fiber, as thin as one micrometer in width, did not puncture the skin cell membrane and poke into the cytoplasm, like a needle piercing through flesh. Rather, the membrane ensheathes the fiber, like rubber insulation around electrical wires.

Researchers captured nerve fibers (green) tunnelling through skin cells (magenta) using cutting-edge microscopy. Scale bar = 5m

Christoph Erbacher

With a detailed view of skin-nerve connections, the researchers explored whether proteins responsible for transmitting signals accumulate on these tunneling fibers. Using a flurry of fluorescent antibodies to search for such a protein, they found that connexin 43, a protein that normally participates in communication between skin cells, decorated the nerve fibers.5 Connexin 43 aggregates in a ring to generate pores in the cell membrane that allow entry of chemical signals such as calcium ions.6 eylers team also found that the calcium ion level spiked inside the cells when the nerve fibers tunneled through, which suggested that the two cell types communicate.

What started out as a chance observation may have implications for healthcare down the road. This skin-nerve cell link could inform research on nervous system disorders that affect the skin. For example, small fiber neuropathy causes a chronic, persistent burning pain on the skin, and eyler hopes that future studies will reveal whether nerve tunnels play a role in the condition.7 Currently, the few treatment options that exist target the nerves directly, but researchers may one day develop therapies that target the skin cells instead.

Before that can happen, scientists must first scratch deeper to unravel the biology of these nerve tunnels. Albers would like to know how these tunnels entwine with skin cells as they migrate from the base layer to the skin surface. She also wondered if nerve fibers tunnel into other cell types found in skin tissue, such as immune cells, and what that crosstalk between cell types might achieve.

No one tissue exists alone; everything communicates at some level, said Albers.

Continue reading below...

View post:
Close Encounters of Skin and Nerve Cells - The Scientist

Impact of aldehydes on DNA damage and aging – EurekAlert

image:

Histones are crosslinked with DNA (histone-DPC) following formaldehyde exposure, leading to the malfunction of cellular processes such as transcription.

Credit: Reiko Matsushita

A team of researchers at Nagoya University in Japan has discovered that aldehydes are metabolic byproducts associated with premature aging. Published in Nature Cell Biology, their findings reveal insights into premature aging diseases and potential strategies to combat aging in healthy individuals such as controlling exposure to aldehyde-inducing substances including alcohol, pollution, and smoke.

A person's health can be harmed by aldehydes. However, the groups findings suggest these detrimental effects also include aging. The team who made this discovery included Yasuyoshi Oka, Yuka Nakazawa, Mayuko Shimada, and Tomoo Ogi of Nagoya University.

DNA damage is linked with aging phenotypes, said Oka. However, for the first time, we propose a relationship between aldehyde-derived DNA damage and premature aging.

The researchers hypothesized that there might be a link between aldehydes and aging since individuals with premature aging disorders, like AMeD syndrome, exhibit inadequate activity of enzymes, like ALDH2, that break down aldehydes.

For healthy individuals, ALDH2 is also important in our response to alcohol. When a person drinks wine or beer, the liver metabolizes the alcohol into aldehydes so it can be eliminated from the body. The activity of ALDH2 is important for converting the aldehydes into a non-toxic substance.

Aldehydes are harmful because they are highly reactive with DNA and proteins. In the body, they form DNA-protein crosslinks (DPCs) that block important enzymes in typical cell proliferation and maintenance processes, causing these processes to malfunction and the patient to age.

Focusing on DPCs caused by aldehyde, the scientists used a method called DPC-seq to investigate the link between aldehyde accumulation and DNA damage in premature-aging disease patients. In a series of experiments, the researchers discovered that the TCR complex, VCP/p97, and the proteasome are involved in the removal of formaldehyde-induced DPCs in actively transcribed regions. This was confirmed by a mouse model lacking both aldehyde clearance processes and the TCR pathway that showed worse AMeD syndrome symptoms.

These processes are important because they are related to the clearance of aldehydes. It suggests an association between premature aging diseases and aldehyde accumulation.

Professor Ogi is hopeful about the implications of their findings, stating: "By elucidating the mechanism by which DNA damage heals quickly, we have revealed part of the cause of genetic premature aging.

Our research opens up new avenues for understanding the underlying mechanisms of premature aging diseases and offers potential targets for therapeutic intervention, Oka said. By elucidating the role of aldehydes in DNA damage and aging, we are paving the way for future studies aimed at developing novel treatments and interventions."

He continued: The development of therapeutic drugs has not progressed because we have not fully understood the causes of AMeD syndrome and Cockayne syndrome. This study suggests that the patient's pathological condition is related to DPC derived from aldehydes generated within cells. These results are expected to help in the search for compounds that remove aldehydes, thus aiding in the formulation of therapeutic drug candidates.

This research has implications that extend beyond genetic diseases, as their findings suggest that aldehyde-induced DNA damage may play a role in the aging process in healthy individuals too. By pinpointing aldehydes as substances that contribute to aging, this study sheds light on the intricate connection between environmental factors and cellular aging. This may have significant implications for human health and lifespan.

Nature Cell Biology

Endogenous aldehyde-induced DNA-protein crosslinks are resolved by transcription-coupled repair

10-Apr-2024

Disclaimer: AAAS and EurekAlert! are not responsible for the accuracy of news releases posted to EurekAlert! by contributing institutions or for the use of any information through the EurekAlert system.

Here is the original post:
Impact of aldehydes on DNA damage and aging - EurekAlert

OrthoID: Decoding Cellular Conversations with Cutting-Edge Technology – yTech

Summary: OrthoID is a novel strategy developed by an interdisciplinary research team to enhance our understanding of organelle communication within cells. It surmounts issues inherent in traditional methodologies and brings forth new levels of clarity to the study of cellular processes related to health and disease.

Within the realm of cellular biology, the nuanced dialogue between organelles like mitochondria and the endoplasmic reticulum (ER) is critical for maintaining cell health. Disruptions in this dialogue have implications in a host of diseases, making it imperative to understand it in detail. Innovatively engineered, OrthoID has been meticulously crafted to offer us deeper insights into organelle communication.

OrthoID differentiates itself from previous methods by using a synthetic binding pair in conjunction with the classic streptavidin-biotin system. This dual binding scheme unveils previously hidden facets of organelle interaction, enabling researchers to capture a broader array of mediator proteins. The technique has already borne fruit, uncovering novel proteins like LRC59 and illuminating their specific functions within the ER-mitochondria contact sites.

The flexibility of OrthoID is one of its many innovations, allowing scientists to customize their approach to studying various organelle interactions. This adaptability was emphasized by Professor Kimoon Kim of POSTECH, who noted the technologys modular nature that could extend beyond ER-mitochondrial studies. Meanwhile, Professor Kyeng Min Park from Daegu Catholic University School of Medicine highlighted its role as a versatile research instrument with promising applications in both understanding and treating diseases.

Overall, OrthoID is forging a path towards a transformative comprehension of cell mechanics, directly impacting future biomedical research and therapy development. The techniques unique perspective on the protein players in organelle communication is reshaping how scientists approach the intricate cellular landscape, bringing us one step closer to unraveling the mysteries of cellular life.

Industry Overview

The biotechnology and pharmaceutical industry is increasingly focusing on cellular biology as a fundamental aspect of understanding disease and developing new therapies. Organelle communication within cells is particularly pertinent to a range of conditions, including neurodegenerative diseases, cancer, and diabetes. The market for cell biology reagents and technologies is on a persistent growth trajectory, fueled by expanding research in cell and molecular biology. Market forecasts suggest that the global market for these technologies, driven by the need for more precise diagnostic tools and effective therapeutic options, is expected to experience significant growth over the next several years.

Market Forecasts

According to industry forecasts, one can expect the market for cell biology reagents and instruments to reach billions of dollars by the end of the decade. North America and Europe are leading this growth, with Asia-Pacific regions showing the highest growth rates due to increasing investments in biotechnology and healthcare infrastructure.

Industry Issues

Despite the anticipated growth, the industry faces several issues. High costs and technical complexities of advanced technologies can pose barriers to entry for smaller research institutions. Intellectual property rights, stringent regulatory frameworks, and ethical considerations surrounding biomedical research are additional challenges that impact industry dynamics. Furthermore, the reproducibility crisis in biological sciences, referring to the difficulty in replicating and validating research findings, underscores the need for reliable technologies like OrthoID.

OrthoIDs Role in the Industry

The development of OrthoID signifies a substantial advancement in the field. It provides a more discerning and versatile tool for the dissection of organelle communication pathways. As diseases often affect or are affected by cellular processes, mastering the intricacies of cell function with technologies like OrthoID can lead to the discovery of novel therapeutic targets. In the near future, this could facilitate the development of treatments that are more targeted and effective.

With continued research and development, medical scientists and researchers can leverage OrthoIDs detailed insights into organelle communication to overcome diseases that have remained enigmatic thus far. In the ever-evolving landscape of biotechnology, products such as OrthoID that provide novel means of understanding biological systems are invaluable.

For more information on the latest advancements and trends within the biotechnology industry, consider visiting reputable sources like the Nature Publishing Group or the World Health Organization (WHO), which can provide up-to-date news and comprehensive reports.

Micha Rogucki is a pioneering figure in the field of renewable energy, particularly known for his work on solar power innovations. His research and development efforts have significantly advanced solar panel efficiency and sustainability. Roguckis commitment to green energy solutions is also evident in his advocacy for integrating renewable sources into national power grids. His groundbreaking work not only contributes to the scientific community but also plays a crucial role in promoting environmental sustainability and energy independence. Roguckis influence extends beyond academia, impacting industry practices and public policy regarding renewable energy.

Link:
OrthoID: Decoding Cellular Conversations with Cutting-Edge Technology - yTech

Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations – Nature.com

Holdo, R. M., Holt, R. D. & Fryxell, J. M. Opposing rainfall and plant nutritional gradients best explain the wildebeest migration in the Serengeti. Am. Nat. 173, 431445 (2009).

Article PubMed Google Scholar

Estes, R. D. The Gnus World: Serengeti Wildebeest Ecology and Life History. (University of California Press, 2014).

McNaughton, S. J. Serengeti migratory wildebeest: facilitation of energy flow by grazing. Science 191, 9294 (1976).

Article ADS CAS PubMed Google Scholar

McNaughton, S. J. Grazing as an optimization process: grass-ungulate relationships in the Serengeti. Am. Nat. 113, 691703 (1979).

Article Google Scholar

Arctander, P., Johansen, C. & Coutellec-Vreto, M. A. Phylogeography of three closely related African bovids (tribe Alcelaphini). Mol. Biol. Evol. 16, 17241739 (1999).

Article CAS PubMed Google Scholar

Skinner, J. D. & Chimimba, C. T. The Mammals of the Southern African Sub-region (Cambridge University Press, 2013).

Kirkman, A. H. B. Conservation notes. Connochaetes gnou. J. Soc. Pres. Fauna Emp. 35, 50 (1938).

von Richter, W. Past and present distribution of the black wildebeest, Connochaetes gnou Zimmermann (Artiodactyla: Bovidae): with special reference to the history of some herds in South Africa. (Transvaal Museum, 1971).

Grobler, P., van Wyk, A. M., Dalton, D. L., van Vuuren, B. J. & Kotz, A. Assessing introgressive hybridization between blue wildebeest (Connochaetes taurinus) and black wildebeest (Connochaetes gnou) from South Africa. Conserv. Genet. 19, 981993 (2018).

Article Google Scholar

Helm, C. V. Ecological separation of the black and blue wildebeest on Ezemvelo Nature Reserve in the highveld grasslands of South Africa. (University of Pretoria, 2007).

Hassanin, A. et al. Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes. C. R. Biol. 335, 3250 (2012).

Article PubMed Google Scholar

Feder, J. L., Egan, S. P. & Nosil, P. The genomics of speciation-with-gene-flow. Trends Genet. 28, 342350 (2012).

Article CAS PubMed Google Scholar

Said, M. Y. et al. Effects of extreme land fragmentation on wildlife and livestock population abundance and distribution. J. Nat. Conserv. 34, 151164 (2016).

Article Google Scholar

Mukeka, J. M., Ogutu, J. O., Kanga, E. & Rskaft, E. Human-wildlife conflicts and their correlates in Narok County, Kenya. Glob. Ecol. Conserv. 18, e00620 (2019).

Google Scholar

Ogutu, J. O. Changing wildlife populations in Nairobi National Park and adjoining Athi-Kaputiei plains: collapse of the migratory wildebeest. Open Conserv. Biol. J. 7, 1126 (2013).

Article Google Scholar

Lvschal, M. et al. Fencing bodes a rapid collapse of the unique Greater Mara ecosystem. Sci. Rep. 7, 41450 (2017).

Article ADS PubMed PubMed Central Google Scholar

Perkins, J. S. Botswana: fencing out the equity issue. Cattleposts and cattle ranching in the Kalahari Desert. J. Arid Environ. 33, 503517 (1996).

Article ADS Google Scholar

Bolger, D. T., Newmark, W. D., Morrison, T. A. & Doak, D. F. The need for integrative approaches to understand and conserve migratory ungulates. Ecol. Lett. 11, 6377 (2008).

Article PubMed Google Scholar

Sinclair, A. R. E. Mammal population regulation, keystone processes and ecosystem dynamics. Philos. Trans. R. Soc. Lond. B Biol. Sci. 358, 17291740 (2003).

Article CAS PubMed PubMed Central Google Scholar

Fryxell, J. M., Greever, J. & Sinclair, A. R. E. Why are migratory ungulates so abundant? Am. Nat. 13, 781798 (1988).

Semmens, D. J., Diffendorfer, J. E., Lpez-Hoffman, L. & Shapiro, C. D. Accounting for the ecosystem services of migratory species: Quantifying migration support and spatial subsidies. Ecol. Econ. 70, 22362242 (2011).

Article Google Scholar

Lpez-Hoffman, L. et al. Ecosystem services from transborder migratory species: implications for conservation governance. Annu. Rev. Environ. Resour. 42, 509539 (2017).

Article Google Scholar

Kauffman, M. J. et al. Mapping out a future for ungulate migrations. Science 372, 566569 (2021).

Article ADS CAS PubMed Google Scholar

Harris, G., Thirgood, S., Hopcraft, J. G. C., Cromsight, J. & Berger, J. Global decline in aggregated migrations of large terrestrial mammals. Endanger. Species Res. 7, 5576 (2009).

Article Google Scholar

Xu, Y. et al. Loss of functional connectivity in migration networks induces population decline in migratory birds. Ecol. Appl. 29, e01960 (2019).

Article PubMed PubMed Central Google Scholar

Lohmann, K. J. Animal migration research takes wing. Curr. Biol. 28, 952955 (2018).

Article Google Scholar

Fudickar, A. M., Jahn, A. E. & Ketterson, E. D. Animal migration: an overview of one of natures great spectacles. Annu. Rev. Ecol. Evol. Syst. 52, 479497 (2021).

Article Google Scholar

Futuyma, D. & Kirkpatrick, M. Evolution (Sinauer, 2017).

Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 16551664 (2009).

Article CAS PubMed PubMed Central Google Scholar

Garcia-Erill, G. & Albrechtsen, A. Evaluation of model fit of inferred admixture proportions. Mol. Ecol. Resour. 20, 936949 (2020).

Article CAS PubMed Google Scholar

Li, H. & Durbin, R. Inference of human population history from individual whole-genome sequences. Nature 475, 493496 (2011).

Article CAS PubMed PubMed Central Google Scholar

Boitard, S., Rodrguez, W., Jay, F., Mona, S. & Austerlitz, F. Inferring population size history from large samples of genome-wide molecular data - an approximate Bayesian computation approach. PLoS Genet. 12, e1005877 (2016).

Article PubMed PubMed Central Google Scholar

Quinn, L. et al. Colonialism in South Africa leaves a lasting legacy of reduced genetic diversity in Cape buffalo. Mol. Ecol. 32, 18601874 (2023).

Article PubMed Google Scholar

Wang, X. et al. Persistent gene flow suggests an absence of reproductive isolation in an African antelope speciation model. bioRxiv https://doi.org/10.1101/2022.12.08.519574 (2022).

Malinsky, M., Matschiner, M. & Svardal, H. Dsuite - Fast D-statistics and related admixture evidence from VCF files. Mol. Ecol. Resour. 21, 584595 (2021).

Article PubMed Google Scholar

Patterson, N. et al. Ancient admixture in human history. Genetics 192, 10651093 (2012).

Article PubMed PubMed Central Google Scholar

Martin, S. H. & Amos, W. Signatures of introgression across the allele frequency spectrum. Mol. Biol. Evol. 38, 716726 (2021).

Article CAS PubMed Google Scholar

Liang, M. & Nielsen, R. The lengths of admixture tracts. Genetics 197, 953967 (2014).

Article PubMed PubMed Central Google Scholar

Excoffier, L. et al. fastsimcoal2: demographic inference under complex evolutionary scenarios. Bioinformatics 37, 48824885 (2021).

Article CAS PubMed PubMed Central Google Scholar

Vozdova, M. et al. A comparative study of meiotic recombination in cattle (Bos taurus) and three wildebeest species (Connochaetes gnou, C. taurinus taurinus and C. t. albojubatus). Cytogenet. Genome Res. 140, 3645 (2013).

Article CAS PubMed Google Scholar

Donnelly, M. P. et al. A global view of the OCA2-HERC2 region and pigmentation. Hum. Genet. 131, 683696 (2012).

Article CAS PubMed Google Scholar

Pieragostini, E., Alloggio, I. & Petazzi, F. Insights into hemoglobin polymorphism and related functional effects on hematological pattern in mediterranean cattle, goat and sheep. Diversity 2, 679700 (2010).

Article CAS Google Scholar

Petkova, D., Novembre, J. & Stephens, M. Visualizing spatial population structure with estimated effective migration surfaces. Nat. Genet. 48, 94100 (2016).

Article CAS PubMed Google Scholar

Estes, R. & East, R. Status of the wildebeest (Connochaetes taurinus) in the wild 1967-2005 (Wildlife Conservation Society, 2009).

Lorenzen, E. D., De Neergaard, R., Arctander, P. & Siegismund, H. R. Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob). Mol. Ecol. 16, 32413252 (2007).

Article CAS PubMed Google Scholar

Pedersen, C.-E. T. et al. A southern African origin and cryptic structure in the highly mobile plains zebra. Nat. Ecol. Evol. 2, 491498 (2018).

Article PubMed Google Scholar

Bertola, L. D. et al. Whole genome sequencing and the application of a SNP panel reveal primary evolutionary lineages and genomic variation in the lion (Panthera leo). BMC Genom. 23, 321 (2022).

Article CAS Google Scholar

Garcia-Erill, G. et al. Warthog genomes resolve an evolutionary conundrum and reveal introgression of disease resistance genes. Mol. Biol. Evol. 39, msac134 (2022).

Balboa, R. F. et al. African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival. Nat. Commun. 15, 172 (2024).

Article ADS CAS PubMed PubMed Central Google Scholar

Ackermann, R. R., Brink, J. S., Vrahimis, S. & De Klerk, B. Hybrid wildebeest (Artiodactyla: Bovidae) provide further evidence for shared signatures of admixture in mammalian crania. S. Afr. J. Sci. 106, 15 (2010).

Article Google Scholar

Todesco, M. et al. Hybridization and extinction. Evol. Appl. 9, 892908 (2016).

Article CAS PubMed PubMed Central Google Scholar

Grobler, J. P. et al. Management of hybridization in an endemic species: decision making in the face of imperfect information in the case of the black wildebeestConnochaetes gnou. Eur. J. Wildl. Res. 57, 9971006 (2011).

Article Google Scholar

Grobler, J. P. et al. The genetic status of an isolated black wildebeest (Connochaetes gnou) population from the Abe Bailey Nature Reserve, South Africa: Microsatellite data on a putative past hybridization with blue wildebeest (C. taurinus). Mamm. Biol. 70, 3545 (2005).

Article Google Scholar

Currat, M., Ruedi, M., Petit, R. J. & Excoffier, L. The hidden side of invasions: massive introgression by local genes. Evolution 62, 19081920 (2008).

PubMed Google Scholar

Oswald, J. A. et al. Evolutionary dynamics of hybridization and introgression following the recent colonization of Glossy Ibis (Aves: Plegadis falcinellus) into the New World. Mol. Ecol. 28, 16751691 (2019).

Article PubMed Google Scholar

See the article here:
Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations - Nature.com

A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global … – Nature.com

Weischenfeldt, J., Symmons, O., Spitz, F. & Korbel, J. O. Phenotypic impact of genomic structural variation: insights from and for human disease. Nat. Rev. Genet. 14, 125138 (2013).

Article CAS PubMed Google Scholar

Alonge, M. et al. Major impacts of widespread structural variation on gene expression and crop improvement in tomato. Cell 182, 145161 e23 (2020).

Article CAS PubMed PubMed Central Google Scholar

Jiao, W. B. & Schneeberger, K. Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics. Nat. Commun. 11, 989 (2020).

Article CAS PubMed PubMed Central Google Scholar

Lian, Q. et al. The megabase-scale crossover landscape is largely independent of sequence divergence. Nat. Commun. 13, 3828 (2022).

Article CAS PubMed PubMed Central Google Scholar

Zapata, L. et al. Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms. Proc. Natl Acad. Sci. USA 113, E4052E4060 (2016).

Article CAS PubMed PubMed Central Google Scholar

Capilla-Perez, L. et al. The synaptonemal complex imposes crossover interference and heterochiasmy in Arabidopsis. Proc. Natl Acad. Sci. USA 118, e2023613118 (2021).

Article CAS PubMed PubMed Central Google Scholar

Durand, S. et al. Joint control of meiotic crossover patterning by the synaptonemal complex and HEI10 dosage. Nat. Commun. 13, 5999 (2022).

Article CAS PubMed PubMed Central Google Scholar

Schmidt, C. et al. Changing local recombination patterns in Arabidopsis by CRISPR/Cas mediated chromosome engineering. Nat. Commun. 11, 4418 (2020).

Article CAS PubMed PubMed Central Google Scholar

Lowry, D. B. & Willis, J. H. A widespread chromosomal inversion polymorphism contributes to a major life-history transition, local adaptation, and reproductive isolation. PLoS Biol. 8, e1000500 (2010).

Article PubMed PubMed Central Google Scholar

Lamichhaney, S. et al. Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax). Nat. Genet. 48, 8488 (2016).

Article CAS PubMed Google Scholar

Harringmeyer, O. S. & Hoekstra, H. E. Chromosomal inversion polymorphisms shape the genomic landscape of deer mice. Nat. Ecol. Evol. 6, 19651979 (2022).

Article PubMed PubMed Central Google Scholar

Tong, X. et al. High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation. Nat. Commun. 13, 5619 (2022).

Article CAS PubMed PubMed Central Google Scholar

Goel, M., Sun, H., Jiao, W. B. & Schneeberger, K. SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies. Genome Biol. 20, 277 (2019).

Article PubMed PubMed Central Google Scholar

Nattestad, M. & Schatz, M. C. Assemblytics: a web analytics tool for the detection of variants from an assembly. Bioinformatics 32, 30213023 (2016).

Article CAS PubMed PubMed Central Google Scholar

Bayer, P. E., Golicz, A. A., Scheben, A., Batley, J. & Edwards, D. Plant pan-genomes are the new reference. Nat. Plants 6, 914920 (2020).

Article PubMed Google Scholar

De Coster, W., Weissensteiner, M. H. & Sedlazeck, F. J. Towards population-scale long-read sequencing. Nat. Rev. Genet. 22, 572587 (2021).

Article PubMed PubMed Central Google Scholar

Della Coletta, R., Qiu, Y., Ou, S., Hufford, M. B. & Hirsch, C. N. How the pan-genome is changing crop genomics and improvement. Genome Biol. 22, 3 (2021).

Article PubMed PubMed Central Google Scholar

Jayakodi, M., Schreiber, M., Stein, N. & Mascher, M. Building pan-genome infrastructures for crop plants and their use in association genetics. DNA Res. 28, dsaa030 (2021).

Article PubMed PubMed Central Google Scholar

Liu, Y. et al. Pan-genome of wild and cultivated soybeans. Cell 182, 162176 e13 (2020).

Article CAS PubMed Google Scholar

Gao, L. et al. The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor. Nat. Genet. 51, 10441051 (2019).

Article CAS PubMed Google Scholar

Zhou, Y. et al. Graph pangenome captures missing heritability and empowers tomato breeding. Nature 606, 527534 (2022).

Article CAS PubMed PubMed Central Google Scholar

Tang, D. et al. Genome evolution and diversity of wild and cultivated potatoes. Nature 606, 535541 (2022).

Article CAS PubMed PubMed Central Google Scholar

Shang, L. et al. A super pan-genomic landscape of rice. Cell Res. 32, 878896 (2022).

Article CAS PubMed PubMed Central Google Scholar

Zhang, F. et al. Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes. Genome Res. 32, 853863 (2022).

PubMed PubMed Central Google Scholar

Qin, P. et al. Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations. Cell 184, 35423558 e16 (2021).

Article CAS PubMed Google Scholar

Hufford, M. B. et al. De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science 373, 655662 (2021).

Article CAS PubMed PubMed Central Google Scholar

Jayakodi, M. et al. The barley pan-genome reveals the hidden legacy of mutation breeding. Nature 588, 284289 (2020).

Article CAS PubMed PubMed Central Google Scholar

Walkowiak, S. et al. Multiple wheat genomes reveal global variation in modern breeding. Nature 588, 277283 (2020).

Article CAS PubMed PubMed Central Google Scholar

Sun, X. et al. Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication. Nat. Genet. 52, 14231432 (2020).

Article CAS PubMed PubMed Central Google Scholar

Liao, W. W. et al. A draft human pangenome reference. Nature 617, 312324 (2023).

Article CAS PubMed PubMed Central Google Scholar

Vollger, M. R. et al. Increased mutation and gene conversion within human segmental duplications. Nature 617, 325334 (2023).

Article CAS PubMed PubMed Central Google Scholar

Initiative, A. G. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796815 (2000).

Article Google Scholar

Cao, J. et al. Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat. Genet. 43, 956963 (2011).

Article CAS PubMed Google Scholar

Gan, X. et al. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477, 419423 (2011).

Article CAS PubMed PubMed Central Google Scholar

The 1001 Genomes Consortium. 1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana. Cell 166, 481491 (2016).

Durvasula, A. et al. African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA 114, 52135218 (2017).

Article CAS PubMed PubMed Central Google Scholar

Zou, Y. P. et al. Adaptation of Arabidopsis thaliana to the Yangtze River basin. Genome Biol. 18, 239 (2017).

Article PubMed PubMed Central Google Scholar

Goktay, M., Fulgione, A. & Hancock, A. M. A new catalog of structural variants in 1,301 A. thaliana lines from Africa, Eurasia, and North America reveals a signature of balancing selection at defense response genes. Mol. Biol. Evol. 38, 14981511 (2021).

Article PubMed Google Scholar

Horton, M. W. et al. Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nat. Genet. 44, 212216 (2012).

Article CAS PubMed PubMed Central Google Scholar

Frachon, L. et al. Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time. Nat. Ecol. Evol. 1, 15511561 (2017).

Article PubMed Google Scholar

Fransz, P. et al. Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant J. 88, 159178 (2016).

Article CAS PubMed PubMed Central Google Scholar

Barragan, A. C. et al. A truncated singleton NLR causes hybrid necrosis in Arabidopsis thaliana. Mol. Biol. Evol. 38, 557574 (2021).

Article CAS PubMed Google Scholar

Michael, T. P. et al. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nat. Commun. 9, 541 (2018).

Article PubMed PubMed Central Google Scholar

Pucker, B. et al. A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set. PLoS ONE 14, e0216233 (2019).

Article CAS PubMed PubMed Central Google Scholar

Rabanal, F. A. et al. Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes. Nucleic Acids Res. 50, 1230912327 (2022).

Article CAS PubMed PubMed Central Google Scholar

Kang, M. et al. The pan-genome and local adaptation of Arabidopsis thaliana. Nat. Commun. 14, 6259 (2023).

Article CAS PubMed PubMed Central Google Scholar

Hagmann, J. et al. Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage. PLoS Genet. 11, e1004920 (2015).

Article PubMed PubMed Central Google Scholar

Anastasio, A. E. et al. Source verification of mis-identified Arabidopsis thaliana accessions. Plant J. 67, 554566 (2011).

Article CAS PubMed Google Scholar

Simon, M. et al. DNA fingerprinting and new tools for fine-scale discrimination of Arabidopsis thaliana accessions. Plant J. 69, 10941101 (2012).

Article CAS PubMed Google Scholar

Long, Q. et al. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nat. Genet. 45, 884890 (2013).

Article CAS PubMed PubMed Central Google Scholar

Sun, H., Ding, J., Piednoel, M. & Schneeberger, K. findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. Bioinformatics 34, 550557 (2018).

See more here:
A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global ... - Nature.com