Biogen and Capsigen Announce Collaboration to Discover and Develop Novel AAV Capsids for Targeted CNS and Neuromuscular Disorders – BioSpace

CAMBRIDGE, Mass. and VANCOUVER, Wash., May 10, 2021 (GLOBE NEWSWIRE) -- Biogen Inc.(Nasdaq: BIIB) and Capsigen Inc. announced today that they have entered into a strategic research collaboration to engineer novel adeno-associated virus (AAV) capsids that have the potential to deliver transformative gene therapies that address the underlying genetic causes of various CNS and neuromuscular disorders.

As a part of the collaboration, Capsigens proprietary TRADE platform and associated technologies will be utilized with the aim to create and identify novel AAV capsids tailored to meet disease-specific transduction profiles. Capsids are the protein coat that protects and facilitates delivery of the virus genetic payload into host cells. The collaboration will leverage Capsigens capsid engineering expertise and Biogens discovery, development, manufacturing and commercialization capabilities with the goal to accelerate delivery of gene therapies to patients in need.

Through this collaboration, we aim to solve key technological challenges in the delivery of gene therapies to target tissues. One of our priorities for technology innovation is the discovery of AAV capsids with improved delivery profiles, said Alfred Sandrock, Jr., M.D., Ph.D., Head of Research and Development at Biogen. We are investing for the long-term by building platform capabilities and advanced manufacturing technologies with the goal of accelerating our efforts in gene therapy.

At Capsigen, we believe the next revolution in gene therapy will be driven by engineered AAV capsids designed to meet disease-specific transduction profiles, said John Bial, Chief Executive Officer. Biogen is a leader in neuroscience, and we are excited for the opportunity to work with them to potentially bring new treatments to patients. This collaboration is consistent with our strategy to work with world-class companies to develop the next generation of gene therapies.

Under the terms of the agreement, Capsigen will apply its vector engineering approaches to develop novel capsids designed to meet highly customized, disease-specific transduction profiles. Biogen will receive an exclusive license under Capsigens proprietary technology for an undisclosed number of CNS and neuromuscular disease targets. Capsigen will receive a $15 million upfront payment and is eligible to receive up to $42 million in potential research milestones and up to an additional $1.25 billion in potential development and commercial payments should the collaboration programs achieve certain developmental milestones and sales thresholds. Capsigen is also eligible to receive royalties on future net sales of products that incorporate capsids resulting from the collaboration.

About Biogen At Biogen, our mission is clear: we are pioneers in neuroscience. Biogen discovers, develops and delivers worldwide innovative therapies for people living with serious neurological and neurodegenerative diseases as well as related therapeutic adjacencies. One of the worlds first global biotechnology companies, Biogen was founded in 1978 by Charles Weissmann, Heinz Schaller, Kenneth Murray and Nobel Prize winners Walter Gilbert and Phillip Sharp. Today Biogen has the leading portfolio of medicines to treat multiple sclerosis, has introduced the first approved treatment for spinal muscular atrophy, commercializes biosimilars of advanced biologics and is focused on advancing research programs in multiple sclerosis and neuroimmunology, Alzheimers disease and dementia, neuromuscular disorders, movement disorders, ophthalmology, neuropsychiatry, immunology, acute neurology and neuropathic pain.

We routinely post information that may be important to investors on our website at http://www.biogen.com. Follow us on social media Twitter, LinkedIn, Facebook, YouTube.

About CapsigenAt Capsigen, were developing the next generation of AAV vectors to fuel the gene therapy needs of the future. Our end-to-end platform employs customized, highly diverse libraries using the most clinically relevant models and routes of administration. Our proprietary TRADE technology eliminates background and employs novel selection strategies to identify only those vectors which are fully functional and meet the disease-specific transduction criteria of interest. The final results are fit-for-purpose vectors designed to deliver the highest level of clinical utility in a rapid and high-throughput manner.

Biogen Safe HarborThis news release contains forward-looking statements, including statements made pursuant to the safe harbor provisions of the Private Securities Litigation Reform Act of 1995, relating to the potential benefits and results that may be achieved through Biogens collaboration with Capsigen; the potential benefits of Capsigens TRADE platform; the potential of Biogens commercial business and pipeline programs; Biogens strategy and plans; the potential treatment of neurological and neurodegenerative diseases; and risks and uncertainties associated with drug development and commercialization. These forward-looking statements may be accompanied by words such as aim, anticipate, believe, could, estimate, expect, forecast, intend, may, plan, potential, possible, will, would and other words and terms of similar meaning. Drug development and commercialization involve a high degree of risk, and only a small number of research and development programs result in commercialization of a product. Results in early-stage clinical trials may not be indicative of full results or results from later stage or larger scale clinical trials and do not ensure regulatory approval. You should not place undue reliance on these statements or the scientific data presented.

These statements involve risks and uncertainties that could cause actual results to differ materially from those reflected in such statements, including without limitation, uncertainty as to whether the anticipated benefits of the collaboration can be achieved; risks of unexpected costs or delays or other unexpected hurdles; uncertainty of success in the development of potential gene therapies, which may be impacted by, among other things, unexpected concerns that may arise from additional data or analysis, the occurrence of adverse safety events, failure to obtain regulatory approvals in certain jurisdictions, failure to protect and enforce data, intellectual property and other proprietary rights and uncertainties relating to intellectual property claims and challenges; the direct and indirect impacts of the ongoing COVID-19 pandemic on Biogens business, results of operations and financial condition; product liability claims; and third party collaboration risks. The foregoing sets forth many, but not all, of the factors that could cause actual results to differ from Biogens expectations in any forward-looking statement. Investors should consider this cautionary statement as well as the risk factors identified in Biogens most recent annual or quarterly report and in other reports Biogen has filed with the U.S. Securities and Exchange Commission. These statements are based on Biogens current beliefs and expectations and speak only as of the date of this news release. Biogen does not undertake any obligation to publicly update any forward-looking statements, whether as a result of new information, future developments or otherwise.

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Biogen and Capsigen Announce Collaboration to Discover and Develop Novel AAV Capsids for Targeted CNS and Neuromuscular Disorders - BioSpace

Soldier-Inspired Innovation Incubator team advances to finals for $500000 xTechBOLT prize – Vanderbilt University News

By Jenna Somers

During battle, many soldiers who become wounded find themselves at the mercy of another soldiers medical training, hoping beyond hope that the soldier administering aid will remember their training well enough to save the wounded soldiers life. Under such duress, recalling the details of medical training could be difficult, and the failure of memory lethal.

But what if there were a way to augment brain function for improved medical learning retention? A transdisciplinary team from Vanderbilt, Soterix Medical and the U.S. Army is collaborating to answer that question. Recently, the team advanced to the finals of the U.S. Army Medical Research and Development Commands xTechBrain Operant Learning TechnologyxTechBOLTprize competition, where they will compete in November with four other teams for the $500,000 first-place prize.

Promoting high-risk, high-reward research in memory retention is the goal of the competition, and the Vanderbilt teams expertise in educational neuroscience, industry innovation and military needs may prove to be the winning combination. Their interdisciplinary collaboration stems from the 2020 Trans-institutional Programs (TIPs) initiative award, Soldier-Inspired Innovation Incubator for Discovering Research-Based Solutions (VRA), which supports research at the School of Engineering, College of Arts and Science, Peabody College, School of MedicineClinical, and Owen Graduate School of Management. As the first university to sign an Educational Partnership Agreement with the Army Futures Command, Vanderbilt is a leader in soldier-inspired innovation, and the work of the xTechBOLT team is the latest example of that leadership.

Led by Katherine Aboud, postdoctoral fellow and National Institutes of Health Outstanding Scholar of Neuroscience, and her mentor, Laurie Cutting, Patricia and Rodes Hart Professor at Peabody College and a member of the Vanderbilt Brain Institute, the team is using high-resolution brain data imaging based on research from Cuttings Education and Brain Science Research Lab to develop an individualized, high-definition non-invasive brain stimulation (HD-NIBS) protocol for accelerated medical learning in the classroom. They will then track how medical learning translates to performance on medical simulation tasks. Specifically, they aim to improve performance on the Expert Field Medical Badge Test, the most failed medical test in the Army.

Over the past two decades, my lab has been using multiple neuroimaging modalities, including diffusion tenser imaging, functional magnetic resonance imaging, and volumetric magnetic resonance imaging, in combination with traditional educational approaches to pioneer neural characterization of learning and learning disorders, particularly in the context of language and individual differences in learning, Cutting said. Of particular interest to the [xTechBOLT competition] proposal is the labs groundbreaking work on the role of executive functions and emotional salience on text-based learning, and the neural predictors of these learning outcomes and processes.

The xTechBOLT competition challenges teams to produce a technology that will promote optimal retention and access to memories. The teams software, BRILLIANCE (for Brain tailoRed stImulation protocoL for acceLerated medIcal performance), will allow any non-scientist to facilitate medical learning retention with the click of a button. The software will interpret high-resolution brain data and send targeting information to Soterix Medicals HD-NIBS technology called High-Definition transcranial Alternating Current Stimulation (HD-tACS).Placed on a persons scalp, electrodes promote communication between multiple areas of the brain. In the present study, electrodes will target brain areas that are responsible for higher order learning. Ultimately, the team plans to commercialize BRILLIANCE as a non-invasive, individualized brain stimulation software for accelerated medical performance.

Abouds pioneering research catalyzed the collaboration between Vanderbilt and Soterix Medical. A couple of years ago, Aboud read about the application of Soterix Medicals technology to remove age-related differences in memory between typical older and younger adults. Wanting to collaborate with Soterix Medical on learning retention, she opened up a line of communication with Abishek Datta, chief technology officer, co-founder and scientist at Soterix Medical. Like Aboud, he recognized that a collaboration between Vanderbilt and Soterix Medical could potentially enhance learning retention not just for soldiers but for people of all backgrounds.

Importantly, our HD-tACS technology is painless and allows unobtrusive pairing with other tasksfeatures that will undoubtedly help in transitioning this technology to an operational setting in the future, Datta said. Our research and development team will work closely with Vanderbilt University and the U.S. Army teams and leverage our decade-long experience in optimized brain stimulation solutions to achieve our goal of accelerating learning.

Following the proof-of-concept phase, the team plans to test BRILLIANCE on 120 soldiers from the 101st Airborne Division at Fort Campbell, Kentucky, who volunteered to participate in the study as members of Vanderbilts Soldier-Inspired Innovation Incubator. Directed by Doug Adams, Daniel F. Flowers Professor of Civil and Environmental Engineering, the Soldier-Inspired Innovation Incubator includes soldiers in design processes to ensure that Vanderbilt research and innovation supports their success in training and on the battlefield.

The software being developed by Katherine Aboud, Laurie Cutting, and their team is combining soldiers insights with Vanderbilts trans-institutional capabilities in the neuroscience of learning and industrys capabilities in brain stimulation to develop a state-of-the-art approach for supporting soldier learning and retention, Adams said. This is exactly the kind of high-impact work that the Soldier-Inspired Incubator TIPs is enabling by acquiring instrumentation that our interdisciplinary teams of researchers can use to explore solution concepts with soldiers to address some of the most challenging problems they face.

Vanderbilt also works with Army personnel on campus, such as Lt. Gen. Gary Cheek, director of the Bass Military Scholars Program, and Lt. Col. and Associate Professor of Military Science and Arts and Science Brandon Hulette, who regularly provide guidance to the Soldier-Inspired Innovation Incubator, including supporting the xTechBOLT prize competition proposal. Additionally, Vanderbilt consultant and former Command Innovation Officer of the Army Futures Command Jay Harrison shared critical insights with the team into the structure of competitions like xTechBOLT and helped shape the final proposal.

I am very excited about our teams cutting-edge work. This mechanism of the xTechBOLT competition allows us to consider a level of scientific and technological innovation that you often cant examine through other mechanisms, Aboud said. Beyond the competition, we could really do a lot of good. If were able to enhance medical learning in a meaningful way, the number of applications of this technology in other educational settings would be incredible. Ultimately, we really want to improve peoples lives by helping our brains learn more effectively.

Contact: Brenda Ellis, 615 343-6314brenda.ellis@vanderbilt.edu

Posted on Friday, May 7, 2021 in 101st Airborne Division, 2021 xTechBOLT competition, BRILLIANCE, Doug Adams, neuroscience, TIPs,Civil and Environmental Engineering, Home Features, News, News Sidebar, Research

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Soldier-Inspired Innovation Incubator team advances to finals for $500000 xTechBOLT prize - Vanderbilt University News

The Link Between Stroke Risk and Infections COVID Included – Baptist Health South Florida

The impact of COVID-19 on a persons risk of a stroke is being intensely researched. But long before the pandemic, it was well-established that viral and bacterial infections can raise a persons stroke risk, in some cases substantially.

Having even common viral or bacterial infections, such as a UTI (urinary tract infection), can be a co-factor in triggering a stroke. The medical literature commonly refers to influenza-like diseases (ILI) when referencing higher stroke risks, especially among adults who already have underlying health issues such as high blood pressure, diabetes, and heart disease.

Felipe De Los Rios, M.D., medical director of the Stroke Program at Baptist Healths Miami Neuroscience Institute.

This risk of increased stroke with COVID-19 is not unique to COVID-19, explains Felipe De Los Rios, M.D., medical director of the Stroke Program at Baptist Healths Miami Neuroscience Institute. Weve seen this before with a lot of different illnesses. Weve seen it with just urinary infections, other respiratory tract infections, influenza or influenza-like illnesses.

Pre-pandemic studies have indicated that even some adults younger than 45 can have a 9-fold higher stroke risk with influenza-like illnesses. Dr. De Los Rios cautions that its difficult to pinpoint a cause for stroke in younger people with few if any comorbidities, or underlying health issues.

It seems likely that there is a stronger association between COVID as it is with influenza-like illnesses but its difficult to say because you have to correct for lots of other factors, says Dr. De Los Rios.

Infection and Other Risk Factors

Stroke can be caused either by a clot obstructing the flow of blood to the brain (called an ischemic stroke the most common) or by a blood vessel rupturing and preventing blood flow to the brain (called a hemorrhagic stroke). Stroke is the No. 5 cause of death and a leading cause of disability in the United States. When a stroke occurs, part of the brain cannot get the blood (and oxygen) it needs, so brain cells die. (May is Stroke Awareness Month).

The top risk factors for stroke are fairly well known: high blood pressure, cigarette smoking, diabetes, high blood cholesterol levels, a diet high in fat (particularly saturated) and salt, and obesity. However, a lesser understood risk factor is infection, which studies have identified as both a potential chronic risk factor and an acute trigger for stroke.

Research presented at the American Stroke Associations International Stroke Conference in 2019 indicated that having a flu-like illness increased the odds of having a stroke by nearly 40 percent over the next 15 days. Several studies have reached similar conclusions long before the COVID pandemic. A separate study in 2019 of over 190,000 stroke patients found that the risk of suffering a stroke was higher in the weeks following any infection that required a trip to an ER or hospitalization. Urinary tract infections (UTIs) showed the strongest link to higher stroke risk.

Infection Pushes Your Body Off Balance

Why do infections increase a persons risk for a stroke? There are many proposed cause-and-effect mechanisms behind the infection-stroke connection, but theres much uncertainty. Researchers suspect a primary mechanism could be excessive inflammation caused by the infection.

Some studies have found that patients with COVID-19 can develop abnormal blood clotting, mostly a result of excessive inflammation. In response to infections, sometimes the body produces an overactive immune response which can lead to increased inflammation. The coronavirus is known to primarily attack the lungs, but it can also affect many other organs, including the blood. This can lead to clot formation.

Dr. De Los Rios says that understanding the impact of an infection on the body comes down to balance. An infection can push your body off balance that is the main point, he says. The more off balance you are, the higher the risk of stroke. Normally, theres this balance in your body between clotting and bleeding so that we dont experience either of them. But if your body is fighting this infection, which is new and may be severe, then your body reacts to it. And in that process of reaction, there can be collateral damage. And part of that collateral damage is a tendency to form clots.

Tags: COVID-19, Miami Neuroscience Institute, National Stroke Awareness Month, stroke

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The Link Between Stroke Risk and Infections COVID Included - Baptist Health South Florida

Four Penn Faculty: Election to the National Academy of Sciences – UPENN Almanac

Four Penn Faculty: Election to the National Academy of Sciences

Four members of the University of Pennsylvania faculty have been elected to the United States National Academy of Sciences (NAS). They join 120 members, 59 of whom are women, the most elected in a single year, and 30 international members, elected by their peers this year to NAS. Recognized for distinguished and continuing achievements in original research, this new class brings the total number of active members to 2,461 and of international members to 511.

Marisa Bartolomei is the Perelman Professor of Cell and Developmental Biology in the department of cell and developmental biology in the Perelman School of Medicine. She is also the co-director of the Penn Epigenetics Institute. Crossing into the disciplines of cell and molecular biology, pharmacology, and neuroscience, Dr. Bartolomei and her lab investigate genomic imprinting in mice. Specifically, they focus on the H19 gene, which is only expressed in maternal alleles, in order to better uncover the mechanisms behind imprinting and the effects of the environment, assisted reproductive technologies, and endocrine disruptors. Her lab also looks into the molecular and genetic systems behind X inactivation in mice. Her research has been published widely in journals including Nature, Nature Biotechnology, Development, and PLoS Genetics.

Michael Kearns is the National Center Professor of Management & Technology in the department of computer and information science in the School of Engineering and Applied Science. He also holds secondary appointments in the School of Arts & Sciences department of economics and the departments of statistics and operations, information and decisions at the Wharton School. He is an expert in machine learning, algorithmic game theory, and microeconomics, and applies both theoretical research and experimental techniques to better understand the social dimensions of new information technology, such as its impact on privacy and fairness. Dr. Kearns is also the founding director of Penns Warren Center for Network and Data Sciences, which draws on researchers from around the University to study some of the most pressing problems of the digital age. Dr. Kearns is also the co-author of The Ethical Algorithm, which shows how seemingly objective data science techniques can produce biased outcomes.

Diana Mutz is the Samuel A. Stouffer Professor of Political Science and Communication in the Annenberg School for Communication. She also serves as director of the Institute for the Study of Citizens and Politics; she is also an affiliate of the Warren Center. She studies political communication, political psychology, and public opinion, and her research focuses on how the American mass public relates to the political world and how people form opinions on issues and candidates. She received a 2017 Carnegie Fellowship and a 2016 Guggenheim Fellowship to pursue research on globalization and public opinion, and in 2011 received the Lifetime Career Achievement Award in Political Communication from the American Political Science Association. In addition to many journal articles, Dr. Mutz is the author of Impersonal Influence: How Perceptions of Mass Collectives Affect Political Attitudes, Hearing the Other Side: Deliberative Versus Participatory Democracy, and In-Your-Face Politics: The Consequences of Uncivil Media.

M. Celeste Simon is the Arthur H. Rubenstein, MB BCh, Professor in the department of cell and developmental biology in the Perelman School of Medicine and the scientific director of The Abramson Family Cancer Research Institute. She and her lab research the metabolism of cancer cells, tumor immunology, metastasis, and how healthy cells and cancer cells respond to a lack of oxygen and nutrients. Her work uses both animal models and cancer patient samples, and her goal is to create techniques to treat various tumors like kidney cancer, soft tissue sarcoma, liver cancer, and pancreatic cancer. Dr. Simon was the recipient of a National Cancer Institute Outstanding Investigator Award in 2017, and she has authored more than 275 articles in journals including Cell, Science, Nature, Cancer Discovery, Nature Genetics, and Cancer Cell.

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Four Penn Faculty: Election to the National Academy of Sciences - UPENN Almanac

Damage to White Matter Linked to Worse Post-Brain Injury Outcomes – Technology Networks

A new University of Iowa study challenges the idea that gray matter (the neurons that form the cerebral cortex) is more important than white matter (the myelin covered axons that physically connect neuronal regions) when it comes to cognitive health and function. The findings may help neurologists better predict the long-term effects of strokes and other forms of traumatic brain injury.

The most unexpected aspect of our findings was that damage to gray matter hubs of the brain that are really interconnected with other regions didn't really tell us much about how poorly people would do on cognitive tests after brain damage. On the other hand, people with damage to the densest white matter connections did much worse on those tests, explains Justin Reber, PhD, a UI postdoctoral research fellow in psychology and first author on the study. This is important because both scientists and clinicians often focus almost exclusively on the role of gray matter. This study is a reminder that connections between brain regions might matter just as much as those regions themselves, if not more so.

The new study, published in PNAS, analyzes brain scans and cognitive function tests from over 500 people with localized areas of brain damage caused by strokes or other forms of brain injury. Looking at the location of the brain damage, also known as lesions, the UI team led by Reber andAaron Boes, MD, PhD, correlated the level of connectedness of the damaged areas with the level of cognitive disability the patient experienced. The findings suggest that damage to highly connected regions of white matter is more predictive of cognitive impairment than damage to highly connected gray matter hubs.

The UI team used these well accepted mathematical models to identify the location of hubs within both gray and white matter from brain imaging of normal healthy individuals. The researchers then used brain scans from patients with brain lesions to find cases where areas of damage coincided with hubs. Using data from multiple cognitive tests for those patients, they were also able to measure the effect hub damage had on cognitive outcomes. Surprisingly, damage to highly connected gray matter hubs did not have a strong association with poor cognitive outcomes. In contrast, damage to dense white matter hubs was strongly linked to impaired cognition.

The brain isn't a blank canvas where all regions are equivalent; a small lesion in one region of the brain may have very minimal impact on cognition, whereas another one may have a huge impact. These findings might help us better predict, based on the location of the damage, which patients are at risk for cognitive impairment after stroke or other brain injury, says Boes, UI professor of pediatrics, neurology, and psychiatry, and a member of the Iowa Neuroscience Institute. It's better to know those things in advance as it gives patients and family members a more realistic prognosis and helps target rehabilitation more effectively.

Reber notes that the study also illustrates the value of working with clinical patients as well as healthy individuals in terms of understanding relationships between brain structure and function.

There is a lot of really excellent research using functional brain imaging with healthy participants or computer simulations that tell us that these gray matter hubs are critical to how the brain works, and that you can use them to predict how well healthy people will perform on cognitive tests. But when we look at how strokes and other brain damage actually affect people, it turns out that you can predict much more from damage to white matter, he says. Research with people who have survived strokes or other brain damage is messy, complicated, and absolutely essential, because it builds a bridge between basic scientific theory and clinical practice, and it can improve both.

I cannot stress enough how grateful we are that these patients have volunteered their time to help us; without them, a lot of important research would be impossible, he adds.

Reference: Reber J, Hwang K, Bowren M, et al. Cognitive impairment after focal brain lesions is better predicted by damage to structural than functional network hubs. PNAS. 2021;118(19). doi:10.1073/pnas.2018784118

This article has been republished from the following materials. Note: material may have been edited for length and content. For further information, please contact the cited source.

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Damage to White Matter Linked to Worse Post-Brain Injury Outcomes - Technology Networks

Los Angeles Area Bioscience Academic Institutions, Researchers, Industry and Investors Converge at LABEST May 25 27, 2021 – BioSpace

UCLA Technology Development Group (UCLA TDG) presents The Los Angeles Bioscience Ecosystem Summit 2021 (LABEST pronounced L-A Best). This event is the premier showcase for bioscience innovation in Los Angeles County. A true collaboration with colleagues from across the county, LABEST presents promising academic research, entrepreneurial faculty investigators, as well as local start- up companies. The goal is to promote awareness of the growing life science entrepreneurial ecosystem in Los Angeles in order to foster partnerships with the biopharma industry.

The pandemic demonstrated the need to quickly translate discoveries into real world products. In this virtual summit we bring together people that make a difference: researchers, hospital CEOs, investors and industry the entire ecosystem needed for drug development and commercialization, said Amir Naiberg, Vice Chancellor, CEO & President, UCLA TDG.

The conference is entirely virtual this year. Throughout the summit, faculty members present the latest scientific breakthroughs, which may lead to the critical therapies of tomorrow. Leading bioscience translational research programs and start-ups will be showcased where Southern California Institutions have significant expertise, pioneering research and resource commitments directed towards developing innovative patient therapies.

LABEST is led by Mark Wisniewski, Senior Director, Bio Pharmaceuticals, UCLA TDG. He adds, We have many leaders who will be providing different perspectives at LABEST on LAs significant progress as a bioscience ecosystem and successful drug development collaborations including Anne Rimoin Professor of Epidemiology who is a keynote speaker, Maria Millan CEO of California Institute of Regenerative Medicine, Arie Belldegrun, Chairman of Bellco Capital, Steven Rosen, Provost and Chief Scientific Officer of the City of Hope and Johnese Spisso, CEO of UCLA Health and President of UCLA Hospital.

LABEST INFORMATION (images on last page) #UCLALABEST2021 @UCLATDG

DATES:Tuesday May 25, Wednesday May 26 and Thursday May 27, 2021

TIME: 9:00AM 5:00PM Pacific Standard Time

LABEST OFFICIAL WEBPAGE https://tdg.ucla.edu/la-best-la-bioscience-ecosystem-summit-2021

REGISTRATION

General Tickets are currently $95 and increase to $125 after May 15th. The cost includes all 3 Days of the LABEST Conference. Registration link: https://tdg.ucla.edu/la-best-la-bioscience-ecosystem-summit-2021

WHERE

This is a completely virtual event. Registered attendees can access the LABEST virtual conference at https://labest2021.vfairs.com/

AGENDA HIGHLIGHTS | View the Latest Agenda Here

KEYNOTE SPEAKERS

CONFERENCE HIGHLIGHTS

LABEST SHORT TALK/PANEL DESCRIPTIONS

Talk/Panel Title

Description

Keynote: Why LA

Eric Esrailian and Gene Sykes

"Why LA": Los Angeles' attraction as a bioscience ecosystem, its exciting growth, competitive advantages, and its future including hosting the 2028 Summer Olympics, LA28.

Keynote: Martin Jarmond

Every player has their part. Teamwork and responsibility are key.

Keynote: Anne Rimoin

COVID-19 and Beyond

How to stop pandemics before they start

Hospital CEOs Sharing Innovations Panel

CEOs of Los Angeles' hospital systems will share their best practices and resulting innovations to address the COVID-19 pandemic and how their collaborative efforts will shape the future of hospital systems and the health of Los Angeles County.

Meet Leaders in the Business of Life Sciences

Biopharma leaders will address scientific innovation, drug development, financing andstartups trends in Los Angeles.

Growth and Retention of Biotech Start-ups in LA

Bioscience CEO will discuss their experiences, decisions, challenges and future opportunities with being located in Los Angeles.

CIRM Strategic Priorities and Opportunities Beyond 2020

With the passage of Prop 14, an additional $5.5 billion dollars have been allocated to fund stem cell research. Leaders in the field will discuss strategy and new opportunities in neuropsychiatric and other disorders.

Immuno-Oncology 2021 and Beyond Panel

After three decades of research, immune-based therapies have become potent new cancer treatments. Recent advances are focused on furthering our understanding of the mechanisms of action and improving access.

Startup Engines: Academic Industry Partnerships

Learn about new partnerships and models of collaboration between academia and industry to advance innovative research into new bioscience startups.

Moving Microbes from Bench to Bedside Panel

An expert-led discussion of the promise of microbial-based treatments for disease while addressing the major obstacles in clinical translation and integrating microbiome-based treatments into the standard of care.

Emerging Therapeutics in Neuroscience Panel

Recent advances in neuroscience will be discussed by a panel of experts seeking to impact these frequently unmet medical needs.

Scaling Gene and Cell Therapies to Reach More Patients Globally Panel

Due to a complex, multi-step treatment journey, there are numerous logistical challenges when it comes to expanding the reach of cell and gene therapies. How can we leverage bio manufacturing speed and scale to unlock the potential of cell and gene therapies and ensure they can get to the patients who need them?

Venture Capital and Syndication In Los Angeles

Learn how prominent Venture Capitalists are focusing on Los Angeles bioscience innovation and the how the increasing availability of capital is generating robust innovative startups in Los Angeles.

Advancing Inclusive Research

In order to enhance the accessibility and affordability of effective therapies, new models for the conduct of clinical trials will be discussed.

Amgen Research & Development/ Academic Strategies

Industry leaders discuss how to strategically work with academia to develop a pipeline for research, development and talent.

Amgen Ventures and Business Development in Los Angeles

How much bioscience business development is really happening in Los Angeles?

How Kite is Building a Global CAR T Franchise Out of LA

Learn how Kite's focus on cell therapy to treat cancer has advanced industry-leading pipeline of chimeric antigen receptor (CAR) and T cell receptor (TCR) product candidates to treat both hematological cancers and solid tumors.

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Los Angeles Area Bioscience Academic Institutions, Researchers, Industry and Investors Converge at LABEST May 25 27, 2021 - BioSpace

Get Out the Vax campaign enters third weekend with 49% vaccinated – The Cincinnati Enquirer

Logo for the Get Out the Vax campaign(Photo: provided)

This weekend is the first of two in May for a full-on Get Out the Vax campaign, where Southwest Ohioand Northern Kentucky health care organizations, community groups and private businesses are encouraging people to get COVID-19 vaccines.

Free public transit will be available again as part of the goal to get 80% of people in the region who qualify for a COVID-19 vaccine inoculated by July 4. As of Wednesday, 49% were vaccinated, according to the Health Collaborative, the region's consortium of health systems.

[Sign up for thefree Coronavirus Watch newsletterto get the latest news in the Cincinnati region]

The campaign was announced on April 6, with two weekends planned for April and May to incentivize and motivate people to get a COVID-19 vaccine. A final campaign weekend is scheduled for May 22-23.

This weekend includes Mother's Day, which campaign officials hope will be incentive enough for many people in the region.

Kaitlyn Clark, a substitute teacher with Fort Thomas Independent Schools, receives her COVID-19 vaccination at St. Elizabeth Training & Education Center, in Erlanger, on Sunday, January 17, 2021.(Photo: Amanda Rossmann, The Enquirer/Amanda Rossmann)

One of the best things to give mom for Mothers Day is a hug, said Kate Schroder, a special adviser for vaccine coordination at the Health Collaborative overseeing the regional campaign, adding that a COVID-19 vaccine can lead to just that.

Check out The Enquirer's vaccine guide for locations and details of the region's vaccine offerings.

People also can goto TestandProtectCincy.comand click on the "Vaccine Info" tab to learn where walk-in vaccines are available. Click on the providers link if you prefer scheduling an appointment.

Schroder said that there are a lot more vaccine clinics in neighborhood events. She also noted people who have trouble with transportationincluding difficulty with using public transit should call 211.

She said still about two-thirds of people in the region are still scheduling appointments, which is why a lot of appointments are available, but more and more, people are walking into vaccination sites.

Cincinnati Health Dept., 3101 Burnet Ave., Corryville; 9 a.m.-2 p.m.; Moderna vaccine.

HealthCare Connection, 1401 Steffen Ave., Lincoln Heights, and 1411 Compton Road, Mount Healthy; 8:30 a.m.-5:30 p.m.;Moderna vaccine.

Mercy Anderson Red Clinic,7502 State Road, Anderson Township;12:30 p.m.-4:30 p.m.;Moderna vaccine.

Price Hill Branch Library, 970 Purcell Ave., East Price Hill;11 a.m.-4 p.m; Johnson & Johnsonvaccine.

Tri Health Baldwin building,625 Eden Park Drive, Mount Auburn, 9 a.m.-3 p.mwith Pfizer vaccine.

TriHealth Bethesda Butler Hospital, 3125 Hamilton-Mason Road, Hamilton;Friday 8 a.m.-2 p.m.; Moderna vaccine.

TriHealth Bethesda North Outpatient Imaging Center, 10494 Montgomery Road, Montgomery; 8 a.m.-6 p.m.;Moderna vaccine.

TriHealth McCullough-Hyde Memorial Hospital, 110 N. Poplar St., Oxford;8 a.m.-2 p.m.; Pfizer vaccine.

TriHealth Western Ridge,6949 Good Samaritan Drive, Colerain Township; 8 a.m.-2 p.m.; Pfizer vaccine.

UCHealth Gardner Neuroscience Institute, 3113 Bellevue Ave. Corryville;9 a.m to 5 p.m.,J&J vaccine.

University of CincinnatiClermont College, 4200 Clermont College Drive, Batavia; 9 a.m.-2:30 p.m.,Pfizer vaccine, sponsored by Clermont County Public Health.

Hartwell Recreation Center, 8725 Vine St.; 10 a.m.-4 p.m.; J&J vaccine, operated by Cincinnati Health Dept,

Mercy Fairfield Medical Office Building, 2960 Mack Road, Suite 100, Fairfield; 8:30 a.m.-4:30 p.m., Moderna vaccine.

Tri Health Baldwin building,625 Eden Park Drive, Mount Auburn, 9 a.m.-3 p.mwith Modernavaccine.

TriHealth Bethesda North Outpatient Imaging Center, 10494 Montgomery Road, Montgomery; 8 a.m.-2 p.m.:Moderna vaccine.

Southern Campbell County Fire Dept., 1050 Race Track Road, Alexandria;9 a.m.-3 p.m.; Moderna vaccine.

TriHealth McCullough-Hyde Memorial Hospital, 110 N. Poplar St., Oxford;8 a.m.-2 p.m.; Pfizer vaccine.

TriHealth Western Ridge,6949 Good Samaritan Drive, Colerain Township; 8 a.m.-2 p.m.; Pfizer vaccine.

UCHealth Gardner Neuroscience Institute, 3113 Bellevue Ave. Corryville;9 a.m to 5 p.m., Pfizervaccine.

TriHealth Bethesda North Outpatient Imaging Center, 10494 Montgomery Road, Montgomery; 8 a.m.-2 p.m.:Moderna vaccine.

Urban League of Greater Southwestern Ohio, 3458 Reading Road, Avondale;11 a.m. - 2 p.m.; Moderna vaccine..

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Originally posted here:
Get Out the Vax campaign enters third weekend with 49% vaccinated - The Cincinnati Enquirer

What Do Mountain Lions Think Of Humans? Find Out At The (Virtual) Pub! – kclu.org

Santa Barbara Natural History Museum is hosting an on-line event which explores how human presence impacts mountain lion behavior.

They are mysterious and reclusive animals, and the Science Pub From Home run by Santa Barbara Natural History Museum is exploring how human behavior impacts mountain lion behavior.

The speaker is UC Santa Cruz Professor Chris Wilmers, who studies mountain lions.

He told KCLU that mountain lions "don't particularly care" for humans.

"For the most part [they] try to avoid us," he said.

"Humans make it incredibly hard to be a mountain lion. We put up barriers like roads which make it very hard for them to move form part of their habitat to another."

Details about how to join the conversation are here.

Original post:
What Do Mountain Lions Think Of Humans? Find Out At The (Virtual) Pub! - kclu.org

Early human impacts and ecosystem reorganization in southern-central Africa – Science Advances

Abstract

Modern Homo sapiens engage in substantial ecosystem modification, but it is difficult to detect the origins or early consequences of these behaviors. Archaeological, geochronological, geomorphological, and paleoenvironmental data from northern Malawi document a changing relationship between forager presence, ecosystem organization, and alluvial fan formation in the Late Pleistocene. Dense concentrations of Middle Stone Age artifacts and alluvial fan systems formed after ca. 92 thousand years ago, within a paleoecological context with no analog in the preceding half-million-year record. Archaeological data and principal coordinates analysis indicate that early anthropogenic fire relaxed seasonal constraints on ignitions, influencing vegetation composition and erosion. This operated in tandem with climate-driven changes in precipitation to culminate in an ecological transition to an early, pre-agricultural anthropogenic landscape.

Modern humans act as powerful agents of ecosystem transformation. They have extensively and intentionally modified their environments for tens of millennia, leading to much debate about when and how the first human-dominated ecosystems arose (1). A growing body of archaeological and ethnographic evidence shows substantial, recursive interactions between foragers and their environments that suggest that these behaviors were fundamental to the evolution of our species (24). Fossil and genetic data indicate that Homo sapiens were present in Africa by ~315 thousand years (ka) ago, and archaeological data show notable increases in the complexity of behavior that took place across the continent within the past ~300- to 200-ka span at the end of the Middle Pleistocene (Chibanian) (5). Since our emergence as a species, humans have come to rely on technological innovation, seasonal scheduling, and complex social cooperation to thrive. These attributes have enabled us to exploit previously uninhabited or extreme environments and resources, so that today humans are the only pan-global animal species (6). Fire has played a key role in this transformation (7).

Biological models suggest that adaptations for cooked food extend back at least 2 million years, but regular archaeological evidence for controlled use of fire does not appear until the end of the Middle Pleistocene (8). A marine core with a dust record drawn from a wide swath of the African continent shows that over the past million years, peaks in elemental carbon occurred after ~400 ka, predominately during shifts from interglacial to glacial conditions, but also during the Holocene (9). This suggests that fire was less common in sub-Saharan Africa before ~400 ka and that by the Holocene, there was a substantial anthropogenic contribution (9). Fire is a tool that has been used by pastoralists to open and maintain grasslands throughout the Holocene (10). However, detecting the contexts and ecological impacts of fire use by Pleistocene early hunter-gatherers is more complex (11).

Fire is known both ethnographically and archaeologically as an engineering tool for resource manipulation, including improvement of subsistence returns or modification of raw materials, with these activities often associated with communal planning and requiring substantial ecological knowledge (2, 12, 13). Landscape-scale fires allow hunter-gatherers to drive game, control pests, and enhance productivity of habitat (2). On-site fire facilitates cooking, warmth, predator defense, and social cohesion (14). However, there is substantial ambiguity regarding the extent to which fires by hunter-gatherers can reconfigure components of a landscape, such as ecological community structure and geomorphology (15, 16).

Understanding the development of human-induced ecological change is problematic without well-dated archaeological and geomorphic data from multiple sites, paired with continuous environmental records. Long lacustrine sedimentary records from the southern African Rift Valley, coupled with the antiquity of the archaeological record in this region, make it a place where anthropogenically induced ecological impacts may be investigated into the Pleistocene. Here, we report the archaeology and geomorphology of an extensively dated Stone Age landscape in southern-central Africa. We then link it to paleoenvironmental data spanning >600 ka to identify the earliest coupled evidence for human behavior and ecosystem transformation in the context of anthropogenic fire.

We provide previously unreported age constraints for the Chitimwe Beds of the Karonga District that lie at the northern end of Lake Malawi in the southern portion of the African Rift Valley (Fig. 1) (17). These beds are composed of lateritic alluvial fan and stream deposits that cover ~83 km2, containing millions of stone artifacts, but do not have preserved organic remains such as bone (Supplementary Text) (18). Our optically stimulated luminescence (OSL) data from terrestrial records (Fig. 2 and tables S1 to S3) revise the age of the Chitimwe Beds to the Late Pleistocene, with the oldest age for both alluvial fan activation and burial of Stone Age sites ca. 92 ka (18, 19). The alluvial and fluvial Chitimwe Beds overlie Plio-Pleistocene Chiwondo Beds of lacustrine and fluvial origin in a low, angular unconformity (17). These sedimentary packages are in fault-bounded wedges along the lake margin. Their configuration indicates interactions between lake level fluctuations and active faulting extending into the Pliocene (17). Although tectonism may have affected regional relief and piedmont slopes over an extended time, fault activity in this region likely slowed since the Middle Pleistocene (20). After ~800 ka until shortly after 100 ka, the hydrology of Lake Malawi became primarily climate driven (21). Therefore, neither is likely the sole explanation for Late Pleistocene alluvial fan formation (22).

(A) Location of sites in Africa (star) relative to modern precipitation; blue is wetter and red is more arid (73); boxed area at left shows location of the MAL05-2A and MAL05-1B/1C cores (purple dots) in Lake Malawi and surrounding region, with the Karonga District highlighted as a green outline and location of Luchamange Beds as a white box. (B) Northern basin of Lake Malawi showing the hillshaded topography, remnant Chitimwe Beds (brown patches), and Malawi Earlier-Middle Stone Age Project (MEMSAP) excavation locations (yellow dots), relative to the MAL05-2A core; CHA, Chaminade; MGD, Mwangandas Village; NGA, Ngara; SS, Sadala South; VIN, Vinthukutu; WW, White Whale.

OSL central age (red lines) and error ranges at 1- (25% gray) for all OSL ages associated with in situ artifact occurrences in Karonga. Ages are shown against the past 125 ka of data for (A) Kernel density estimate of all OSL ages from alluvial fan deposits indicating sedimentation/alluvial fan accumulation (teal), and lake level reconstructions based on eigenvalues of a principal components analysis (PCA) of aquatic fossils and authigenic minerals from the MAL05-1B/1C core (21) (blue). (B) Counts of macrocharcoal per gram normalized by sedimentation rate, from the MAL05-1B/1C core (black, one value near 7000 off scale with asterisk) and MAL05-2A core (gray). (C) Margalefs index of species richness (Dmg) from fossil pollen of the MAL05-1B/1C core. (D) Percentages of fossil pollen from Asteraceae, miombo woodland, and Olea, and (E) percentages of fossil pollen from Poaceae and Podocarpus. All pollen data are from the MAL05-1B/1C core. Numbers at the top refer to individual OSL samples detailed in tables S1 to S3. Differences in data availability and resolution are due to different sampling intervals and material availability in the core. Figure S9 shows the two macrocharcoal records converted to z scores.

Landscape stability after (Chitimwe) fan formation is indicated by formation of laterites and pedogenic carbonates, which cap fan deposits across the study region (Supplementary Text and table S4). The formation of alluvial fans in the Late Pleistocene of the Lake Malawi basin is not restricted to the Karonga region. About 320 km to the southeast in Mozambique, terrestrial cosmogenic nuclide depth profiles of 26Al and 10Be constrain formation of the alluvial, lateritic Luchamange Beds to 119 to 27 ka (23). This broad age constraint is consistent with our OSL chronology for the western Lake Malawi basin and indicates regional alluvial fan expansion in the Late Pleistocene. This is supported by data from lake core records, which suggest a higher sedimentation rate accompanied by increased terrigenous input after ca. 240 ka, with particularly high values at ca. 130 and 85 ka (Supplementary Text) (21).

The earliest evidence for human occupation in the region is tied to the Chitimwe sedimentary deposits identified at ~92 7 ka. This result is based on 605 m3 of excavated sediment from 14 archaeological excavations with subcentimeter spatial control, and 147 m3 of sediment from 46 archaeological test pits with 20-cm vertical and 2-m horizontal control (Supplementary Text and figs. S1 to S3). In addition, we have surveyed 147.5 linear km, emplaced 40 geological test pits, and analyzed over 38,000 artifacts from 60 of these localities (tables S5 and S6) (18). These extensive surveys and excavations show that while hominins, including early modern humans, may have inhabited the region before ~92 ka, depositional aggradation associated with rising and then stabilized Lake Malawi levels did not preserve archaeological evidence until formation of the Chitimwe Beds.

The archaeological data support the inference that during the Late Quaternary, fan expansion and human activities in northern Malawi were substantial, and artifacts were of a type associated elsewhere in Africa with early modern humans. The majority of artifacts were created from quartzite or quartz river cobbles and featured radial, Levallois, platform, and casual core reduction (fig. S4). Morphologically diagnostic artifacts can be predominantly attributable to Levallois-type technologies characteristic of the Middle Stone Age (MSA), known to date from at least ~315 ka in Africa (24). The uppermost Chitimwe Beds, which continue into the Early Holocene, contain sparsely distributed Later Stone Age occurrences, found in association with terminal Pleistocene and Holocene hunter-gatherers across Africa. In contrast, stone tool traditions typically associated with the Early and Middle Pleistocene, such as large cutting tools, are rare. Where these do occur, they are found within MSA-bearing deposits dated to the Late Pleistocene, not an earlier phase of sedimentation (table S4) (18). Although sites are present from ~92 ka, the most well-represented period of both human activity and alluvial fan deposition occurs after ~70 ka, well defined by a cluster of OSL ages (Fig. 2). We confirm this pattern with 25 published and 50 previously unpublished OSL ages (Fig. 2 and tables S1 to S3). These show that of a total of 75 age determinations, 70 were recovered from sediment that postdates ~70 ka. The 40 ages associated with in situ MSA artifacts are shown in Fig. 2, relative to major paleoenvironmental indicators published from the MAL05-1B/1C central basin lake core (25) and previously unpublished charcoal from the MAL05-2A northern basin lake core (adjacent to the fans that produced the OSL ages).

Climate and environmental conditions coeval with MSA human occupation at Lake Malawi were reconstructed using freshly generated data from phytoliths and soil micromorphology from archaeological excavations and published data from fossil pollen, macrocharcoal, aquatic fossils, and authigenic minerals from the Lake Malawi Drilling Project cores (21). The latter two proxies are the primary basis of the reconstruction of relative lake depth dating back over 1200 ka (21) and are matched to pollen and macrocharcoal samples taken from the same places in the core that span the past ~636 ka (25). The longest cores (MAL05-1B and MAL05-1C; 381 and 90 m, respectively) were collected ~100 km southeast of the archaeological project area. A shorter core (MAL05-2A; 41 m) was collected ~25 km east, offshore from the North Rukuru River (Fig. 1). The MAL05-2A core reflects terrigenous paleoenvironmental conditions of the Karonga region, whereas the MAL05-1B/1C cores did not receive direct riverine input from Karonga and thus are more reflective of regional conditions.

Sedimentation rates recorded in the MAL05-1B/1C composite drill core began to increase starting ~240 ka from a long-term average of 0.24 to 0.88 m/ka (fig. S5). The initial increase is associated with changes in orbitally modulated insolation, which drive high amplitude changes in lake level during this interval (25). However, when orbital eccentricity decreased and climate stabilized after 85 ka, sedimentation rates remained high (0.68 m/ka). This is concurrent with the terrestrial OSL record, which shows extensive evidence for alluvial fan expansion after ~92 ka, and congruent with magnetic susceptibility data that show a positive relationship between erosion and fire after 85 ka (Supplementary Text and table S7). Given the error ranges of available geochronological controls, it is not possible to tell whether this set of relationships evolved slowly from a progression of recursive processes or occurred in rapid bursts as tipping points were reached. On the basis of geophysical models of basin evolution, rift extension and associated subsidence have slowed since the Middle Pleistocene (20) and, therefore, are not the primary cause of extensive fan formation processes we have dated to mainly after 92 ka.

Climate has been the dominant control of lake level since the Middle Pleistocene (26). Specifically, uplift in the northern basin closed an existing outlet ca. 800 ka, allowing the lake to deepen until reaching the sill elevation of the modern outlet (21). This outlet, located at the southern end of the lake, provides an upper limit on lake levels during wet intervals (including the present day), but allows the basin to close as lake levels drop during periods of aridity (27). Lake level reconstructions show alternating wet-dry cycles over the past 636 ka. On the basis of evidence from fossil pollen, periods of extreme aridity (>95% decrease in total water volume) linked to lows in summer insolation resulted in the expansion of semidesert vegetation with trees restricted to permanent waterways (27). These (lake) lowstands were associated with pollen spectra showing high proportions of grass (80% or more) and xerophytic herbs (Amaranthaceae) at the expense of tree taxa and low overall species richness (25). In contrast, when the lake was near the modern level, vegetation with strong affinities to Afromontane forest typically expanded to the lakeshore [~500 m above sea level (masl)]. Today, Afromontane forests only occur in small, discontinuous patches above ~1500 masl (25, 28).

The most recent period of extreme aridity occurred from 104 to 86 ka, after which open miombo woodland with substantial grass and herbaceous components became widespread, despite recovery of the lake level to high-stand conditions (27, 28). Afromontane forest taxa, most notably Podocarpus, never recovered after 85 ka to values similar to previous periods of high lake levels (10.7 7.6% after 85 ka versus 29.8 11.8% during analogous lake level before 85 ka). Margalefs index (Dmg) also shows that the past 85 ka has been marked by species richness 43% lower than during previous sustained periods of high lake level (2.3 0.20 versus 4.6 1.21, respectively), for example, in the high lake period between ca. 420 and 345 ka (Supplementary Text and figs. S5 and S6) (25). Pollen samples from the period ca. 88 to 78 ka also contain high percentages of Asteraceae pollen, which can be indicative of vegetation disturbance and is within the error range of the oldest date for human occupation of the area.

We use a climate anomaly approach (29) to analyze paleoecological and paleoclimatic data from the drill cores before and after 85 ka and test the hypothesis that the ecological relations among vegetation, species richness, and precipitation became decoupled from predictions derived from the presumably purely climate-driven baseline pattern of the preceding ~550 ka. This transformed ecological system was influenced by both lake infilling precipitation conditions and fire occurrence, as reflected in a species-poor and novel vegetation assemblage. Only some forest elements recovered after the last arid period, and these included fire-tolerant components of the Afromontane forest such as Olea, and hardy components of tropical seasonal forest such as Celtis (Supplementary Text and fig. S5) (25). To test this hypothesis, we model lake level derived from ostracode and authigenic mineral proxies as the independent variable (21) versus dependent variables such as charcoal and pollen that could have been affected by increased fire frequency (25).

To examine how similar or dissimilar the assemblages were to one another at different times, we conducted a principal coordinates analysis (PCoA) using pollen from Podocarpus (evergreen tree), Poaceae (grasses), Olea (a fire-tolerant component of Afromontane forest), and miombo (the dominant woodland component today). By mapping the PCoA on top of an interpolated surface that represents lake level at the time each assemblage was formed, we examine how pollen assemblages changed relative to precipitation and how this relationship changed after 85 ka (Fig. 3 and fig. S7). Before 85 ka, samples dominated by Poaceae cluster toward drier conditions, while samples dominated by Podocarpus cluster toward wetter conditions. In contrast, samples dating to after 85 ka cluster away from the majority of pre-85-ka samples and have a different average value, showing that their composition is unusual for similar precipitation conditions. Their position in the PCoA reflects the influence of Olea and miombo, both of which are favored under more fire-prone conditions. Of the post-85-ka samples, Podocarpus is only abundant in three successive samples, which occurred just after the onset of this interval between 78 and 79 ka. This suggests that after initial rainfall increase, forests appear to make a brief recovery before eventual collapse.

Each dot represents a single pollen sample at a given point in time, using the age model in the Supplementary Text and fig. S8. Vectors show the direction and gradient of change, with longer vectors representing a stronger trend. The underlying surface represents lake levels as a proxy for precipitation; darker blue is higher. A mean value for the PCoA eigenvalues is provided for the post-85-ka data (red diamond) and all pre-85-ka data from analogous lake levels (yellow diamond). Analogous lake levels are between 0.130- and 0.198- around the mean eigenvalue of the lake level PCA using the entire 636 ka of data.

To investigate the relations among the pollen, lake levels, and charcoal, we used a nonparametric multivariate analysis of variance (NP-MANOVA) to compare the total environment (represented by a data matrix of pollen, lake levels, and charcoal), before and after the transition at 85 ka. We found that variation and covariation found in this data matrix are statistically significantly different before and after 85 ka (Table 1).

DF, degrees of freedom.

Our terrestrial paleoenvironmental data from phytoliths and soils on the western lake margins agree with interpretations based on proxies from the lake. These show that despite high lake levels, the landscape had transitioned to one dominated by open canopy woodland and wooded grassland, much as today (25). All localities analyzed for phytoliths on the western margin of the basin date to after ~45 ka and show substantial arboreal cover that reflect wet conditions. However, they suggest that much of that cover is in the form of open woodlands in cohort with bambusoid and panicoid grasses. On the basis of phytolith data, fire-intolerant palms (Arecaceae) were present exclusively by the lake shoreline and rare or absent from inland archaeological sites (table S8) (30).

In general, wet but open conditions in the later part of the Pleistocene are also inferred from terrestrial paleosols (19). Lagoonal clay and palustrine-pedogenic carbonates from the vicinity of the Mwangandas Village archaeological site date between 40 and 28 cal ka BP (calibrated kiloanni before present) (table S4). Carbonate soil horizons within the Chitimwe Beds are typically nodular calcretes (Bkm) and argillic and carbonate (Btk) horizons, which indicate locations of relative landform stability with slow sedimentation derived from distal alluvial fan progradation by ca. 29 cal ka BP (Supplementary Text). Eroded, indurated laterite soils (petroplinthites) formed on remnants of paleofans are indicative of open landscape conditions (31) with strongly seasonal precipitation (32), illustrating the ongoing legacy of these conditions on the landscape.

Support for the role of fire in this transformation comes from the paired macrocharcoal records from the drill cores, which from the central basin (MAL05-1B/1C) show an overall increase in charcoal influx starting ca. 175 ka. Substantial peaks follow between ca. 135 and 175 ka and 85 and 100 ka, after which time lake levels recover but forest trees and species richness do not (Supplementary Text, Fig. 2, and fig. S5). The relationship between charcoal influx and magnetic susceptibility of lake sediments can also show patterns in long-term fire history (33). Using data from Lyons et al. (34), ongoing erosion of burned landscapes after 85 ka is implied at Lake Malawi by a positive correlation (Spearmans Rs = 0.2542 and P = 0.0002; table S7), whereas older sediments show an inverse relationship (Rs = 0.2509 and P < 0.0001). In the northern basin, the shorter MAL05-2A core has its deepest chronological anchor point with the Youngest Toba Tuff at ~74 to 75 ka (35). Although it lacks the longer-term perspective, it receives input directly from the catchment from which the archaeological data derive. The north basin charcoal record shows a steady increase in terrigenous charcoal input since the Toba crypto-tephra marker, over the period where archaeological evidence is most prevalent (Fig. 2B).

Evidence for anthropogenic fire may reflect intentional use at the landscape scale, widespread populations creating more or larger on-site ignitions, alteration of fuel availability through harvesting of the understory, or a combination of these activities. Modern hunter-gatherers use fire to actively modify foraging returns (2). Their activities increase prey abundances, maintain mosaic landscapes, and increase pyrodiversity and succession stage heterogeneity (13). Fire is also important for on-site activities such as heat, cooking, defense, and socialization (14). Even small differences in the deployment of fire outside of natural lightning strikes can alter patterns of forest succession, fuel availability, and seasonality of ignitions. Reductions in arboreal cover and woody understory have the most potential to enhance erosion, while loss of species diversity in this region is tightly tied to loss of Afromontane forest communities (25).

Human control of fire is well established in the archaeological record from before the start of the MSA (15), but its use as a landscape management tool has only so far been documented in a few Paleolithic contexts. These include in Australia ca. 40 ka (36), Highland New Guinea ca. 45 ka (37), and ca. 50 ka at Niah Cave in lowland Borneo (38). In the Americas, anthropogenic ignitions have been implicated as major factors in the reconfiguration of faunal and floral communities as humans first entered these ecosystems, especially within the past 20 ka (16). These conclusions are necessarily based on correlative evidence, but the argument for a cause-and-effect relationship is strengthened where there is direct overlap of archaeological, geochronological, geomorphic, and paleoenvironmental data. Although marine core data offshore of Africa have previously provided evidence of altered fire regimes over the past ~400 ka (9), here, we provide evidence of anthropogenic impacts that draw from correlated archaeological, paleoenvironmental, and geomorphic datasets.

Identifying anthropogenic fire in the paleoenvironmental record requires evidence of temporal or spatial changes in fire activity and vegetation, demonstration that these changes are not predicted by climate parameters alone, and temporal/spatial coincidence between fire regime changes and changes in the human record (29). Here, the first evidence for extensive MSA occupation and alluvial fan formation in the Lake Malawi basin occurred alongside a major reorganization of regional vegetation that began ca. 85 ka. Charcoal abundances in the MAL05-1B/1C core are reflective of regional trends in charcoal production and sedimentation that show substantial differences after ca. 150 ka when compared to the rest of the 636-ka record (figs. S5, S9, and S10). This transition shows an important contribution of fire for shaping ecosystem composition that cannot be explained by climate alone. In natural fire regimes, lightning ignitions typically occur at the end of the dry season (39). Anthropogenic fires, however, may be ignited at any time if fuels are sufficiently dry. On a site scale, humans can alter fire regimes continuously through collection of firewood from the understory. The net result of anthropogenic fire of any kind is that it has the potential to result in more consumption of woody vegetation, continuously throughout the year, and at a variety of scales.

In South Africa, fire was used in the heat treatment of stone for tool manufacture as early as 164 ka (12) and as a tool for cooking starchy tubers as early as 170 ka (40), taking advantage of resources that thrived in ancient fire-prone landscapes (41). Landscape fires reduce arboreal cover and are crucial tools in maintaining grassland and forest patch environments, which are defining elements of anthropogenically mediated ecosystems (13). If modification of vegetation or prey behavior was the intent of increased anthropogenic burning, then this behavior represents an increase in the complexity with which early modern humans controlled and deployed fire in comparison to earlier hominins and shows a transformed interdependency in our relationship with fire (7). Our analysis offers an additional avenue for understanding how human use of fire changed in the Late Pleistocene and what impacts these changes had on their landscapes and environments.

The expansion of alluvial fans during the Late Quaternary in the Karonga region may be attributable to changes in seasonal burning cycles under higher-than-average rainfall conditions, which resulted in enhanced hillslope erosion. The mechanism through which this occurred was likely by driving watershed-scale responses from fire-induced disturbance with enhanced and sustained denudation in the upper portions of the watersheds, and alluvial fan expansion in the piedmont environments adjacent to Lake Malawi. These responses likely included changes in soil properties to decrease infiltration rates, diminished surface roughness, and enhanced runoff as high precipitation conditions combined with reduced arboreal cover (42). Sediment availability is enhanced initially by the stripping of cover material and over longer time scales potentially by loss of soil strength from heating and from decreased root strength. The stripping of topsoil increased sediment flux, which was accommodated by fan aggradation downstream and accelerated laterite formation on the fans.

Many factors can control the landscape response to changing fire regime, and most of them operate at short time scales (4244). The signal we associate here is manifest at the thousand-year time scale. Analytical and landscape evolution models have shown notable denudation rate changes over thousand-year time scales with recurrent wildfire-induced vegetation disturbances (45, 46). A lack of regional fossil records contemporaneous with the observed changes in charcoal and vegetation records impedes reconstruction of the impacts of human behavior and environmental change on herbivore community composition. However, large grazing herbivores that inhabit landscapes that are more open play a role in maintaining them and in keeping woody vegetation from encroaching (47). Evidence of change across different components of the environment should not be expected to be simultaneous, but rather viewed as a series of cumulative effects that may have occurred over a prolonged period (11). Using a climate anomaly approach (29), we attribute human activity as a key driver in shaping the landscape of northern Malawi over the course of the Late Pleistocene. However, these impacts may be built on an earlier, less visible legacy of human-environment interactions. Charcoal peaks that appear in the paleoenvironmental record before the earliest archaeological dates may include an anthropogenic component that did not result in the same ecological regime change that is documented later in time and that did not involve sedimentation sufficient to confidently indicate human occupation.

Short sediment cores, such as that from the adjacent Lake Masoko basin in Tanzania, or shorter cores within Lake Malawi itself, show changes in the relative pollen abundances of grass to woodland taxa that have been attributed to natural climate variability over the past 45 ka (4850). However, it is only with the longer perspective of the >600-ka pollen record of Lake Malawi, accompanied by the extensively dated archaeological landscape next to it, that it is possible to understand the longer-term associations between climate, vegetation, charcoal, and human activity. Although humans were likely present in the northern Lake Malawi basin before 85 ka, the density of archaeological sites after ca. 85 ka, and especially after 70 ka, indicates that the region was attractive for human occupation after the last major arid period ended. At this time, novel or more intensive/frequent usage of fire by humans apparently combined with natural climate shifts to restructure a >550-ka ecological relationship, ultimately generating an early preagricultural anthropogenic landscape (Fig. 4). Unlike during earlier time periods, the depositional nature of this landscape preserved MSA sites as a function of the recursive relationship between environment (resource distributions), human behavior (activity patterns), and fan activation (sedimentation/site burial).

(A) ca. 400 ka: No detectable human presence. Wet conditions similar to today with high lake level. Diverse, nonfire-tolerant arboreal cover. (B) ca. 100 ka: No archaeological record, but human presence possibly detected by charcoal influx. Extremely arid conditions occur in a desiccated watershed. Commonly exposed bedrock, limited surface sediment. (C) ca. 85 to 60 ka: Lake level is increasing with higher precipitation. Human presence archaeologically detectable after 92 ka and concentrated after 70 ka. Burning of uplands and alluvial fan expansion ensue. Less diverse, fire-tolerant vegetation regime emerges. (D) ca. 40 to 20 ka: Ambient charcoal input in the northern basin increases. Alluvial fan formation continues but begins to abate toward the end of this period. Lake levels remain high and stable relative to the preceding 636-ka record.

The Anthropocene represents the accumulation of niche construction behaviors that have developed over millennia, at a scale unique to modern H. sapiens (1, 51). In the modern context, anthropogenic landscapes persist and have intensified following the introduction of agriculture, but they are extensions, not disconnections, of patterns established during the Pleistocene (52). Data from northern Malawi show that periods of ecological transition can be prolonged, complex, and iterative. Transformations of this scale reflect complex ecological knowledge by early modern humans and illustrate their transition to the globally dominant species we are today.

Site survey and recording of artifact and cobble characteristics on survey tracts followed protocols described in Thompson et al. (53). Test pit emplacement and main site excavation, including micromorphology and phytolith sampling, followed protocols described in Thompson et al. (18) and Wright et al. (19). Our Geographic Information System (GIS) maps based on Malawi geological survey maps of the region show a clear association between the Chitimwe Beds and archaeological sites (fig. S1). Placement of geologic and archaeological test pits in the Karonga region was spaced to capture the broadest representative sample possible (fig. S2). Geomorphic, geochronometric, and archaeological investigations of Karonga involved four main field approaches: pedestrian survey, archaeological test pitting, geological test pitting, and detailed site excavations. Together, these techniques allowed major exposures of the Chitimwe Beds to be sampled in the northern, central, and southern parts of Karonga (fig. S3).

Site survey and recording of artifact and cobble characteristics on pedestrian survey tracts followed protocols described in Thompson et al. (53). This approach had two main goals. The first was to identify localities where artifacts were actively eroding, and then place archaeological test pits upslope at those localities to recover artifacts in situ from buried contexts. The second goal was to formally document the distribution of artifacts, their characteristics, and their relationship to nearby sources of lithic raw material (53). For this work, a crew comprising three people walked at 2- to 3-m spacing for a combined total of 147.5 linear km, transecting across most of the mapped Chitimwe Beds (table S6).

Work concentrated first on the Chitimwe Beds to maximize the sample of observed artifacts, and second on long linear transects from the lakeshore to the uplands that crosscut different sedimentary units. This confirmed the key observation that artifacts located between the western highlands and the lakeshore are exclusively associated with the Chitimwe Beds or more recent Late Pleistocene and Holocene deposits. Artifacts found in other deposits are ex situ and have been relocated from elsewhere on the landscape, as revealed by their abundances, sizes, and degree of weathering.

Archaeological test pit emplacement and main site excavation, including micromorphology and phytolith sampling, followed protocols described in Thompson et al. (18, 54) and Wright et al. (19, 55). The primary aim was to understand the subsurface distribution of artifacts and fan deposits across the larger landscape. Artifacts are typically deeply buried within the Chitimwe Beds in all places except at the margins, where erosion has begun to remove the top part of the deposit. During informal survey, two people walked across Chitimwe Beds that appear as mapped features on Government of Malawi geological maps. As these people encountered the shoulders of Chitimwe Bed deposits, they began to walk along the margins where they could observe artifacts eroding from the deposits. By placing excavations slightly (3 to 8 m) upslope from actively eroding artifacts, excavations could reveal their in situ locations relative to their containing sediments, without the necessity of laterally extensive excavations. Test pits were emplaced so that they would be 200- to 300-m distant from the next-nearest pit and thus capture the variation across Chitimwe Bed deposits and the artifacts they contained. In some cases, test pits revealed localities that later became the sites of full excavations.

All test pits began as 1 2 m squares, oriented north-south, and excavated in 20-cm arbitrary units, unless there was a noticeable change in sediment color, texture, or inclusions. Sedimentologic and pedologic attributes were recorded for all excavated sediment, which was passed uniformly through a 5-mm dry sieve. If deposit depth continued beyond 0.8 to 1 m, then excavation ceased in one of the two square meters and continued in the other, thus creating a step so that the deeper layers could be safely accessed. Excavation then continued until bedrock was reached, at least 40 cm of archaeologically sterile sediment had been reached below a concentration of artifacts, or excavation became too unsafe (deep) to proceed. In some cases, deposit depth required extension of the test pit into a third square meter, with two steps into the trench.

Geologic test pits had previously revealed that the Chitimwe Beds often appear on geologic maps because of a distinctive reddish color, when they include a wide range of stream and river deposits, alluvial fan deposits, and do not always present as red in color (19). Geologic test pits were excavated as simple pits designed to clean off mixed upper sediments to reveal the subsurface stratigraphy of deposits. This was necessary because the Chitimwe Beds erode as parabolic hillslopes with slumped sediments coating the slope and do not typically form clear natural sections or cuts. These excavations thus occurred either at the tops of Chitimwe Beds, where there was an inferred subsurface contact between the Chitimwe Beds and the underlying Pliocene Chiwondo Beds, or where river terrace deposits required dating (55).

Full archaeological excavations proceeded at localities that promised large assemblages of in situ stone artifacts, typically based on test pits or where artifacts could be seen eroding in large quantities from a slope. Artifacts from the main excavations were recovered from sedimentary units that were excavated separately in 1 1 m squares. Units were excavated as spits of either 10 or 5 cm if artifact densities were high. All stone artifacts, fossil bone, and ochre were piece plotted at each main excavation, with no size cutoff. The sieve size was 5 mm. Artifacts were assigned unique barcoded plotted find numbers if they were recovered during excavation, and find numbers within the same series were assigned to sieved finds. Artifacts were labeled with permanent ink, placed in a bag with their specimen label, and bagged together with other artifacts from the same context. After analysis, all artifacts were stored at the Cultural and Museum Centre, Karonga.

All excavation was conducted according to natural layers. These were subdivided into spits, with spit thickness dependent on artifact density (e.g., spit thickness would be high if artifact density was low). Context data (e.g., sediment attributes, context relationships, and observations about disturbances and artifact densities) were recorded in an Access database. All coordinate data (e.g., piece-plotted finds, context elevations, square corners, and samples) are based on Universal Transverse Mercator (UTM) coordinates (WGS 1984, Zone 36S). At main sites, all points were recorded using a Nikon Nivo C-series 5 total station that was established within a local grid oriented as closely as possible to UTM north. The location of the northwest corner of each excavated site and the volume of sediment removed for each are given in table S5.

Profiles of sedimentologic and pedologic features were documented from all excavation units using the U.S. Department of Agriculture classification scheme (56). Sedimentologic units were designated on the basis of grain sizes, angularity, and bedding features. Anomalous inclusions and disturbances relative to the sediment unit were noted. Soil development was determined on the basis of subsurface accumulation of sesquioxides or carbonates in the subsoils. Subaerial weathering (e.g., redox, residual Mn nodule formation) was also commonly documented.

Collection points for OSL samples were determined on the basis of an estimation of which facies were likely to yield the most reliable estimation of sediment burial age. At sample locations, trenches were made to expose authigenic sediment layers. All samples for OSL dating were collected by inserting light-tight steel tubes (approximately 4 cm in diameter and 25 cm in length) into the sediment profiles.

OSL dating measures the size of the population of trapped electrons within crystals such as quartz or feldspar arising from exposure to ionizing radiation. The bulk of this radiation originates from the decay of radioactive isotopes within the environment with a minor additional component in the tropical latitudes coming in the form of cosmic radiation. Trapped electrons are released upon exposure of the crystals to light, which occurs either during transport (the zeroing event) or in the laboratory, where illumination occurs beneath a sensor (for example, a photomuliplier tube or charged couple device camera) that can detect photons emitted when the electrons return to their ground state. Quartz grains measuring between 150 and 250 m were isolated through sieving, acid treatments and density separations, and analyzed either as small aliquots (<100 grains) mounted to the surface of aluminum disks or as single grains held within 300 by 300 mm wells drilled into an aluminum disc. Burial doses were typically estimated using single aliquot regeneration methods (57). In addition to assessment of the radiation dose received by grains, OSL dating also requires estimation of the dose rate through measurements using gamma spectrometry or neutron activation analysis of radionuclide concentrations within the sediments from which the sample was collected, along with determination of a cosmic dose rate by reference to the sample location and burial depth. Final age determination is achieved by dividing the burial dose by the dose rate. However, statistical modeling is required to determine an appropriate burial dose to use when there is a variation in the doses measured for individual grains or groups of grains. Burial doses were calculated here using the Central Age Model, in the case of single aliquot dating, or the finite mixture model in the case of single grain dating (58).

Three separate laboratories performed OSL analysis for this study. Detailed individual methods for each laboratory are presented below. In general, we applied OSL dating using regenerative-dose methods to small aliquots (tens of grains) rather than using single grain analysis. This is because small aliquots of samples had low recuperation ratios (<2%) during regenerative growth experiments and the OSL signals were not saturated at the levels of natural signals. Interlaboratory consistency of age determinations, consistent harmony of results within and between stratigraphic sections tested, and parity with geomorphic interpretations of 14C ages from carbonates were the primary basis of this assessment. Single grain protocols were evaluated or performed at each laboratory, but independently determined to be inappropriate for use in this study. Detailed methods and analytical protocols followed by individual laboratories are provided in Supplementary Materials and Methods.

Lithic artifacts recovered from controlled excavations (BRU-I; CHA-I, CHA-II, and CHA-III; MGD-I, MGD-II, and MGD-III; and SS-I) were analyzed and described according to metric and qualitative characteristics. Weight and maximum dimension were measured for each artifact (weight was measured to 0.1 g using a digital scale; all dimensions measured to 0.01 mm with Mitutoyo digital calipers). All artifacts were also classified according to raw material (quartz, quartzite, chert, and other), grain size (fine, medium, and coarse), grain size homogeneity, color, cortex type and coverage, weathering/edge rounding, and technological class (complete or fragmentary core or flake, flake piece/angular shatter, hammerstone, manuport, and other).

Cores were measured along their maximum length; maximum width; width at 15, 50, and 85% of length; maximum thickness; and thickness at 15, 50, and 85% of length. Measurements were also taken to assess the volumetric attributes of hemispherically organized (radial and Levallois) cores. Both complete and broken cores were classified according to reduction method (single or multiplatform, radial, Levallois, and other), and flake scars were counted at both 15 mm and at 20% of core length. Cores with five or fewer scars 15 mm were classified as casual. Cortex coverage was recorded for the total core surface, and on hemispherically organized cores, the relative cortex coverage was recorded for each side.

Flakes were measured along their maximum length; maximum width; width at 15, 50, and 85% of length; maximum thickness; and thickness at 15, 50, and 85% of length. Fragmentary flakes were described according to the portion preserved (proximal, medial, distal, split right, and split left). Elongation was calculated by dividing maximum length by maximum width. Platform width, thickness, and exterior platform angle were measured on complete flakes and proximal flake fragments, and platforms were classified according to degree of preparation. Cortex coverage and location were recorded on all flakes and fragments. Distal edges were classified according to termination type (feather, hinge, and overshot). On complete flakes, the number and orientation of prior flake scars were recorded. When encountered, retouch location and invasiveness were recorded following the protocol established by Clarkson (59). Refitting programs were initiated for most of the excavated assemblages to assess reduction methods and site depositional integrity.

Lithic artifacts recovered from test pits (CS-TP1-21, SS-TP1-16, and NGA-TP1-8) were described according to a simpler scheme than those from controlled excavations. For each artifact, the following characteristics were recorded: raw material, grain size, cortex coverage, size class, weathering/edge damage, technological component, and preserved portion of fragmentary pieces. Descriptive notes were recorded for diagnostic features of flakes and cores.

Intact blocks of sediment were cut from profiles exposed in excavations and geological trenches. These blocks were stabilized in the field, using either plaster-of-Paris bandages or toilet paper and packaging tape, and transported to the Geoarchaeology Laboratory at the University of Tbingen, Germany. There, the samples were dried at 40C for at least 24 hours. They were then indurated under vacuum, using a mixture of unpromoted polyester resin and styrene at a ratio of 7:3. Methyethylketone peroxide was used as the catalyst, with resin-styrene mixture (3 to 5 ml/liter). Once the resin mixture had gelled, the samples were heated at 40C for at least 24 hours to completely harden the mixture. The hardened samples were cut with a tile saw into chips measuring 6 9 cm, which were glued to a glass slide and ground to a thickness of 30 m. The resulting thin sections were scanned using a flatbed scanner and analyzed under the naked eye and under magnification (50 to 200) using plane-polarized light, cross-polarized light, oblique incident light, and blue-light fluorescence. Terminology and descriptions of the thin sections follow guidelines published by Stoops (60) and Courty et al. (61). Pedogenic carbonate nodules, collected from a depth of >80 cm, were sliced in half so that one half could be impregnated and studied in thin section (4.5 2.6 cm), using standard stereoscopic and petrographic microscopes, as well as cathodoluminescence (CL) microscopy. Control on the type of carbonate was given much care, as pedogenic carbonates form in connection to a stable ground surface, while groundwater carbonates form independently from a ground surface or soil.

Samples were drilled from the cut faces of pedogenic carbonate nodules, which were halved to be used for various analyses. The thin sections were studied by F.S. with standard stereo and petrographic microscopes of the working group for geoarchaeology and with a CL microscope at the working group for experimental mineralogy, both in Tbingen, Germany. Subsamples for radiocarbon dating were drilled with a precision drill from designated areas of ca. 3 mm in diameter in the opposing half of the nodule, avoiding zones with late recrystallization, abundant mineral inclusions, or great variability in calcite crystal sizes. The same protocol could not be followed for samples MEM-5038, MEM-5035, and MEM-5055 A, which were selected from loose sediment samples and too small to be cut in half for thin sectioning. However, corresponding micromorphological samples of the adjacent sediment, including carbonate nodules, were studied in thin section.

We submitted samples for 14C dating to the Center for Applied Isotope Studies (CAIS), at the University of Georgia, Athens, USA. The carbonate samples were reacted with 100% phosphoric acid in evacuated reaction vessels to produce CO2. CO2 samples were cryogenically purified from the other reaction products and catalytically converted to graphite. Graphite 14C/13C ratios were measured using a 0.5-MeV accelerator mass spectrometer. The sample ratios were compared to the ratio measured from the oxalic acid I standard (NBS SRM 4990). Carrara marble (IAEA C1) was used as the background, and travertine (IAEA C2) was used as a secondary standard. The results are presented as percent modern carbon, and the quoted uncalibrated dates are given in radiocarbon years before 1950 (years BP), using the 14C half-life of 5568 years. The error is quoted as 1- and reflects both statistical and experimental errors. The dates have been corrected for isotope fractionation based on the isotope-ratio mass spectrometrymeasured 13C values reported by C. Wissing at the laboratory for Biogeology in Tbingen, Germany, except in the case of UGAMS-35944r, which was measured at CAIS. Sample 6887B was analyzed in duplicate. A second subsample was drilled from the nodule for this purpose (UGAMS-35944r) from the sampling region indicated on the cut surface. All samples were corrected for atmospheric fractionation of 14C to 2- using the southern hemisphere application of the INTCAL20 calibration curve (table S4) (62).

Sample (sediment, 0.7 g) was mixed with 0.1% preboiled solution of sodium hexametaphosphate Na6[(PO3)6] and sonicated (5 min). Orbital shaking took place overnight at 200 rpm. After clay dispersal, 3 N hydrochloric and nitric acids (HCl) (HNO3) plus hydrogen peroxide (H2O2) were added. Then, sodium polytungstate (3Na2WO49WO3H2O) (Poly-Gee) at specific gravity 2.4 (preboiled) separated out phytoliths. This was followed by rinsing and centrifugation of samples at 3000 rpm for 5 min. Aliquots (15 l) were mounted on boiled microscope slides with Entellan New (cover, 20 40 mm = inspected area). System microscopy was performed at 40 (Olympus BX41, Motic BA410E). Classification nomenclature followed the International Code for Phytolith Nomenclature (63). The referential baseline included modern plants from several African ecoregions (64) and local soils (65), as well as archaeological localities in the Malawi basin (19, 66).

The OSL data from the landscape and paleoecological data from the Lake Malawi 1B/1C core were subjected to statistical analyses to examine how they changed before and after ~85 ka. Kernel density estimates (KDEs) of sedimentation were constructed following protocols developed in Vermeesch (67) and Kappler et al. (68) from 72 luminescence ages interpreted as originating from alluvial fan deposits (tables S1 to S3). KDEs provide reliable distributions of age occurrences when standard errors (SEs) overlap or the analytical imprecision of the true age is high (67). For the present analysis, each age was replotted 10,000 times along a normal distribution using the rnorm command in R based on the laboratory generated mean and 1- SE. The KDE was created in the kde1d package in R (69). Bandwidth was set to default, with data-derived parameters developed by Sheather and Jones (70).

To characterize the biotic environment, we used proportions of pollen from Poaceae, Podocarpus, miombo, and Olea. We used lake levels to characterize the abiotic environment. Over the ~636 ka span of the MAL05-1B/1C core for which pollen data are available, there have been several periods when lake level was equivalent to modern conditions. We have defined these analogous conditions by downsampling the published lake level data (21) to fit the pollen sample intervals (25), and then calculating the statistical mean of the principal components analysis (PCA) eigenvalue for all lake level proxies over the past 74 ka to represent modern-like lake conditions. The pollen sampling intervals effectively make this the statistical mean of lake levels between 21.4 and 56.2 ka [0.130- and 0.198- (25)] and enable us to compare recent vegetation composition to its composition during older, analogous precipitation regimes.

To evaluate whether there were differences in the regional environmental structure before and after 85 ka, we conducted a NP-MANOVA (71). However, vegetation and lake level proxies are inherently different data types [pollen proportions (25) and the first principal component of all lake level proxies (21), respectively]. To conduct the MANOVA, these data must be the same type. Pollen, lake level proxies, and macrocharcoal were also sampled at different densities and intervals in the cores. To properly adjust the data so that once a single pollen sample and its age are matched to a single charcoal and lake level sample, we conducted a series of transformations. Because the pollen data were the most sparsely sampled, we used a spline to fit and downsample the lake level and charcoal data to match them. To make the pollen and lake level data equivalent, we conducted a PCoA using R software (72). PCoA is similar to the widely known PCA in that PCoA conducts a decomposition of a data matrix to obtain eigenvalues and their corresponding eigenvectors. The difference is that while PCA decomposes the variance-covariance matrix, PCoA solves for the eigenvalues of a distance matrix of the original data. To create the distance matrix, we used the 2 distance, which is appropriate for proportion data, like pollen. The PCoA results in a set of scores, representing the original data, which can be plotted similar to PCA. In our case, these scores are not only useful for graphic illustration, but as they are normalized and Euclidean, they are identical to the lake level data and maintain all information contained by the original pollen dataset. This procedure allowed us to use the PCoA pollen scores in conjunction with lake level variable in the NP-MANOVA to test whether there was a difference in environment before and after 85 ka. For the Supplementary Materials statistics, biplots of species richness and lake level were constructed using the ggplot2 package of R. Box and whiskers quartiles used the boxplot command in base R.

D. Delvaux, Peri-Tethys Memoir: PeriTethyan Rift/Wrench Basins and Passive Margins, P. A. Ziegler, W. Cavazza, A. H. F. Robertson, S. Crasquin-Soleau, Eds. (Memoirs of the National Museum of Natural History, Paris 2001), pp. 545567.

N. van Breemen, P. Buurman, Soil Formation, N. van Breemen, P. Buurman, Eds. (Springer Netherlands, Dordrecht, 1998), pp. 291312.

C. Whitlock, C. Larsen, Charcoal as a fire proxy, in Tracking Environmental Change Using Lake Sediments: Terrestrial, Algal, and Siliceous Indicators, J. P. Smol, H. J. B. Birks, W. M. Last, R. S. Bradley, K. Alverson, Eds. (Springer Netherlands, 2001), pp. 7597.

P. J. Schoeneberger, D. A. Wysocki, E. C. Benham; Soil Survey Staff, Field Book for Describing and Sampling Soils, Version 3.0 (Natural Resources Conservation Service, National Soil Survey Center, 2012).

G. Stoops, Guidelines for Analysis and Description of Soil and Regolith Thin Sections (Soil Science Society of America, Inc., 2003).

M. A. Courty, P. Goldberg, R. Macphail, Soils and Micromorphology in Archaeology (Cambridge Manuals in Archaeology, Cambridge Univ. Press, 1989).

R Core Team, R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, 2020).

W. R. Van Schumus, Natural radioactivity in crust and mantle, in Global Earth Physics: A Handbook of Physical Constants, T. J. Ahrens, Ed. (American Geophysical Union, 1995), pp. 283291.

M. J. Aitken, An Introduction to Optical Dating: The Dating of Quaternary Sediments by the Use of Photon-Stimulated Luminescence (Oxford Univ. Press, 1998).

A. M. Alonso-Zarza, V. P. Wright, Calcretes, in Carbonates in Continental Settings: Facies, Environments and Processes, Developments in Sedimentology, A. M. Alonso-Zarza, L. H. Tanner, Eds. (Elsevier, 2010), vol. 61, pp. 225267.

G. M. Ashley, D. M. Deocampo, J. Kahmann-Robinson, S. G. Driese, Groundwater-fed wetland sediments and paleosols: Its all about water table, in New Frontiers In Paleopedology And Terrestrial Paleoclimatology, S. G. Driese, L. C. Nordt, Eds. (SEPM Society for Sedimentary Geology, 2013), vol. 104, pp. 4761.

M. N. Machette, Calcic Soils of the Southwestern United States, in Soils and Quaternary Geology of the Southwestern United States: Geological Society of America Special Paper, D. L. Weide, M. L. Faber, Eds. (Geological Society of America, 1985), vol. 203, pp. 121.

A. M. Alonso-Zarza, V. P. Wright, Palustrine carbonates, in Carbonates in Continental Settings: Facies, Environments and Processes, Developments in Sedimentology A. M. Alonso-Zarza, L. H. Tanner, Eds. (Elsevier, 2010), vol. 61, pp. 103131.

A. S. Goudie, Calcrete, in Chemical Sediments and Geomorphology, A. S. Goudie, K. Pye, Eds. (Academic Press, 1983), pp. 93131.

R. J. Schaetzl, S. Anderson, Soil Genesis and Geomorphology (Cambridge Univ. Press, 2005).

V. P. Wright, Calcrete, in Geochemical Sediments and Landscapes, D. J. Nash, S. J. McLaren, Eds. (Blackwell Publishing, 2007), pp. 1045.

G. Taylor, R. A. Eggleton, Regolith Geology and Geomorphology (John Wiley & Sons, Chicester, 2001).

V. P. Wright, Soil Micromorphology: A Basic and Applied Science, L. A. Douglas, Ed. (Elsevier, 1990), pp. 401407.

M. J. Vepraskas, L. P. Wilding, L. R. Drees, Aquic conditions for Soil Taxonomy: Concepts, soil morphology and micromorphology, in Developments in Soil Science, A. J. Ringrose-Voase, G. S. Humphreys, Eds. (Elsevier, 1993), vol. 22, pp. 117131.

M. J. McFarlane, Laterite and Landscape (Academic Press, 1976).

J. E. Delvigne, Atlas of Micromorphology of Mineral Alteration and Weathering (Mineralogical Association of Canada, 1998).

I. Kovda, A. R. Mermut, Vertic features, in Interpretation of Micromorphological Features of Soils and Regoliths, G. Stoops, V. Marcelino, F. Mees, Eds. (Elsevier, 2010), pp. 109127.

Y. Tardy, Petrology of Laterites and Tropical Soils (A. A. Balkema Publishers, 1997).

K. Faegri, J. Iversen, P. E. Kaland, K. Krzywinski, Textbook of Pollen Analysis (Blackburn Press, ed. 4th, 1989).

R. Bonnefille, G. Riollet, Pollens de Savanes dAfrique Orientale (ditions du Centre national de la recherche scientifique, Paris, 1980).

E. C. Grimm, Tilia and Tiliagraph (Illinois State Museum, 1991).

B. M. Campbell, The Miombo in transition: Woodlands and welfare in Africa (Bogor, Indonesia, Center for International Forestry Research, 1996).

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Early human impacts and ecosystem reorganization in southern-central Africa - Science Advances

Early humans used fire to permanently change the landscape – PBS NewsHour

Fields of rust-colored soil, spindly cassava, small farms and villages dot the landscape. Dust and smoke blur the mountains visible beyond massive Lake Malawi. Here in tropical Africa, you cant escape the signs of human presence.

How far back in time would you need to go in this place to discover an entirely natural environment?

Our work has shown that it would be a very long time indeed at least 85,000 years, eight times earlier than the worlds first land transformations via agriculture.

We are part of an interdisciplinary collaboration between archaeologists who study past human behavior, geochronologists who study the timing of landscape change and paleoenvironmental scientists who study ancient environments. By combining evidence from these research specialities, we have identified an instance in the very distant past of early humans bending environments to suit their needs. In doing so, they transformed the landscape around them in ways still visible today.

Crew members excavate artifacts at a site in Karonga, Malawi, where stone tools are buried more than 3 feet (1 meter) below the modern ground surface. Jessica Thompson, CC BY-ND

The dry season is the best time to do archaeological fieldwork here, and finding sites is easy. Most places we dig in these red soils, we find stone artifacts. They are evidence that someone sat and skillfully broke stones to create edges so sharp they can still draw blood. Many of these stone tools can be fit back together, reconstructing a single action by a single person, from tens of thousands of years ago.

Middle Stone Age artifacts, some of which can be fit back together. Sheila Nightingale, CC BY-ND

So far weve recovered more than 45,000 stone artifacts here, buried many feet (1 to 7 meters) below the surface of the ground. The sites we are excavating date to a time ranging from about 315,000 to 30,000 years ago known as the Middle Stone Age. This was also a period in Africa when innovations in human behavior and creativity pop up frequently and earlier than anywhere else in the world.

How did these artifacts get buried? Why are there so many of them? And what were these ancient hunter-gatherers doing as they made them? To answer these questions, we needed to figure out more about what was happening in this place during their time.

The Viphya drill barge on Lake Malawi, where researchers braved waterspouts and lake fly swarms to obtain a long record of past environments. Andy Cohen, CC BY-ND

For a clearer picture of the environments where these early humans lived, we turned to the fossil record preserved in layers of mud at the bottom of Lake Malawi. Over millennia, pollen blown into the water and tiny lake-dwelling organisms became trapped in layers of muck on the lakes floor. Members of our collaborative team extracted a 1,250-foot (380-meter) drill core of mud from a modified barge, then painstakingly tallied the microscopic fossils it contained, layer by layer. They then used them to reconstruct ancient environments across the entire basin.

Today, this region is characterized by bushy, fire-tolerant open woodlands that do not develop a thick and enclosed canopy. Forests that do develop these canopies harbor the richest diversity in vegetation; this ecosystem is now restricted to patches that occur at higher elevations. But these forests once stretched all the way to the lakeshore.

Based on the fossil plant evidence present at various times in the drill cores, we could see that the area around Lake Malawi repeatedly alternated between wet times of forest expansion and dry periods of forest contraction.

As the area underwent cycles of aridity, driven by natural climate change, the lake shrank at times to only 5% of its present volume. When lake levels eventually rose each time, forests encroached on the shoreline. This happened time and time again over the last 636,000 years.

The mud in the core also contains a record of fire history, in the form of tiny fragments of charcoal. Those little flecks told us that around 85,000 years ago, something strange happened around Lake Malawi. Charcoal production spiked, erosion increased and, for the first time in more than half a million years, rainfall did not bring forest recovery.

At the same time this charcoal burst appears in the drill core record, our sites began to show up in the archaeological record eventually becoming so numerous that they formed one continuous landscape littered with stone tools. Another drill core immediately offshore showed that as site numbers increased, more and more charcoal was washing into the lake. Early humans had begun to make their first permanent mark on the landscape.

Many people around the world still rely on fire for warmth, cooking, ritual and socializing including the research crew when doing fieldwork. Jessica Thompson, CC BY-ND

Fire use is a technology that stretches back at least a million years. Using it in such a transformative way is human innovation at its most powerful. Modern hunter-gatherers use fire to warm themselves, cook food and socialize, but many also deploy it as an engineering tool. Based on the wide-scale and permanent transformation of vegetation into more fire-tolerant woodlands, we infer that this was what these ancient hunter-gatherers were doing.

By converting the natural seasonal rhythm of wildfire into something more controlled, people can encourage specific areas of vegetation to grow at different stages. This so-called pyrodiversity establishes miniature habitat patches and diversifies opportunities for foraging, kind of like increasing product selection at a supermarket.

The research team exposes ancient stone tools near Karonga, Malawi. Jessica Thompson, CC BY-ND

Just like today, changing any part of an ecosystem has consequences everywhere else. With the loss of closed forests in ancient Malawi, the vegetation became dominated by more open woodlands that are resilient to fire but these did not contain the same species diversity. This combination of rainfall and reduced tree cover also increased opportunities for erosion, which spread sediments into a thick blanket known as an alluvial fan. It sealed away archaeological sites and created the landscape you can see here today.

Although the spread of farmers through Africa within the last few thousand years brought about more landscape and vegetation transformations, we have found that the legacy of human impacts was already in place tens of thousands of years before. This offers a chance to understand how such impacts can be sustained over very long timescales.

Open woodlands have grown over alluvial fans that formed during the Middle Stone Age. Trenches such as this one at an excavation site show multiple layers of discarded artifacts over a period of tens of thousands of years. Jessica Thompson, CC BY-ND

Most people associate human impacts with a time after the Industrial Revolution, but paleo-scientists have a deeper perspective. With it, researchers like us can see that wherever and whenever humans lived, we must abandon the idea of pristine nature, untouched by any human imprint. However, we can also see how humans shaped their environments in sustainable ways over very long periods, causing ecosystem transformation without collapse.

Seeing the long arc of human influence therefore gives us much to consider about not only our past, but also our future. By establishing long-term ecological patterns, conservation efforts related to fire control, species protection and human food security can be more targeted and effective. People living in the tropics, such as Malawi today, are especially vulnerable to the economic and social impacts of food insecurity brought about by climate change. By studying the deep past, we can establish connections between long-term human presence and the biodiversity that sustains it.

With this knowledge, people can be better equipped to do what humans had already innovated nearly 100,000 years ago in Africa: manage the world around us.

This article is republished from The Conversation under a Creative Commons license. Read the original article.

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Early humans used fire to permanently change the landscape - PBS NewsHour