Producers invited to advanced genetic training offered by King Ranch Institute at Rapid City – Farm Forum

SDSU College of Agriculture and Biological Sciences

BROOKINGS Using genetic technology to improve cattle herds with an improved payday captivates cattle producers. Those willing to learn will have a unique opportunity to acquire the latest in this specialized technology via a program offered in Rapid City by the King Ranch Institute for Ranch Management in May.

Sessions on Application of Advanced Genetic Technology in Beef Cattle will be offered May 11-12 at the Rushmore Inn and Suites in Rapid City. The South Dakota State University West River Ag Center is co-hosting the lectureships.

This is exactly the information that many producers are looking for, Kristi Cammack, director of the West River Ag Center in Rapid City said. We hear many of our producers are beginning or wanting to use genetic technology to improve their herds. Some question if they are using it correctly; some feel it is information overload.

As the technology develops, those in the industry have gone from reluctance to acceptance. Many have observed others who are using it and are eager to implement the practices. Keeping up with genetic selection and evaluation innovations can be challenging. Cammack sees two groups of cattle people who will learn from the sessions. There are the early adopters who have been trying the technology and the second group are those who are interested but dont know where to start.

The sessions are meant to strengthen the understanding of the genetic principles and help attendees build on the information. Faculty contracted by the King Institute will share how to apply advanced genetic technologies in the real world of seedstock and commercial cattle production.

Instructors will be Bob Weaber, Ph.D., Extension specialist animal sciences and industry from Kansas State University and Matt Spangler, Ph.D., beef genetics Extension specialist in the Animal Science Department, University of Nebraska-Lincoln. Along with the basics, they will look at the application of advanced genetic tools including genomically enhanced expected progeny differences and marker assisted management in genetic advancement.

Cammack expects that the sessions will appeal to both commercial and seed stock producers from across the state, region, and throughout the country. Many in the cattle industry know and respect the King Ranch and the expertise provided by SDSU and its staff.

Information will focus on developing breeding objectives for the herd and determining the economics relative for each operation as that may vary within a region. Owners want to know what will work for them at their location, taking into consideration different feedstuffs and different markets.

The tools have advanced so they are producer friendly. Cammack said the speakers will share knowledge that producers can apply and use in their operation, including an applied understanding of how to use genomic selection tools. Cattle producers will get a lot out of the 1 -day program. Learning will come from Interactive Sire Selection Scenarios where attendees will break out into groups and practice how to pick sires.

We hope the result is that cattle producers will learn to use advanced genetics. Applying these tools, in the correct way, will pay off with improved genetics. Producers will find it advancing herd genetics really pays it forward, Cammack said.

Contact Cammack at 605-394-2236, or email [emailprotected] To see the agenda and make a reservation, go to: http://bit.ly/2peuHmS.

Reservations for rooms: Rushmore Inn and Suites, 605-646-4690 (Group Rate: $79/night for reservations made by April 18; Event name: Beef Cattle).

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Producers invited to advanced genetic training offered by King Ranch Institute at Rapid City - Farm Forum

Dairy genetics importer sees 42 per cent increase in sales – Stuff.co.nz

PAT DEAVOLL

Last updated10:26, April 13 2017

CASEY TRELOAR

Two-month old holstein calf Gigi sold for a quarter of a million dollars in Australia in January. She may be cute, but she is worth every cent.

Importer of US dairy genetics, Christchurch based World Wide Sires New Zealand (WWSNZ) has seen a 42 per cent increase in straw sales over the last year.

General manager Hank Lina said New Zealand farmers were increasingly interested in different genetic options to produce more profitable dairy cows and heifers.

"Farmers are starting to shop around as they are realising that semen is a huge investment, not a commodity," he said.

Ben Curran

Hank Lina: Breeding worth tends to be the currency for dairy breeding in this country but it's not the only way to judge great genetics

This was strikingly demonstrated in January when a two-month-old holstein heifer, Lightning Ridge-CMD Jedi Gigi-Imp-Et (or Gigi for short) was sold for NZ$263,850 at the WWS evolution sale in Victoria, Australia, smashing the previous Australasian record.

READ MORES:Best price heifer! Gigi the A$251,000 calf off to America after breaking record

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Hank Lina: The measure that speaks most loudly to farmers is what they see in the paddock, in the vat and in their bank balance.

*Biochemist explores dairy's genetic brew

Gigi ranked fourth in the world genetic total performance index out of more than a million calves. Her sister Yahoo, which ranked second in Australia in the genetic total performance index, sold for A$37,000 to an Australian breeder.

Gigi's owner, Declan Patten, of Lightning Ridge Holsteins, said the aim was to breed cows that were more efficient by producing more milk while being fed the same amount as ordinary cows.

FIONA HANKS

Owner Declan Patten (front left) with his prized calf Gigi after the record sale.

"We're trying to make a more profitable cow, " he said. "It's also better for the environment."

Lina said WWS was formed in the US 45 years ago and was now one of the largest distributors of dairy genetics around the world. It was owned by two of the largest farmer-owned AI cooperatives in the world Select Sires and Accelerated Genetics - with 51,000 farmer members and sales exceeding 19 million straws.

Lina has worked with Maffra Herd Improvement and NZ Genetics in Australia, has been an AI consultant in Ireland and acting general manager of a large dairy operation in Missouri, US, before returning to New Zealand as a CRV Ambreed regional sales and service manager. He was appointed World Wide Sires' NZ general manager late in 2015.

"WWSNZ has been in New Zealand for at least 30 years so we're part of the industry. I believe now, with the volatility we're seeing in the dairy payout, that the company's genetics have more relevance for Kiwi farmers than ever," he said

"I believe the big player in the genetics market has hedged itself into a one-size-fits-everything position in breeding worth, limiting the amount of choice for New Zealand farmers.

"We're saying there is another way which will help you reduce head count and improve production.

"Breeding worth tends to be the currency for dairy breeding in this country but it's not the only way to judge great genetics.

"Many farmers with moderate-to-high BW herds are saying they're not seeing this translated into milksolids, fertility, longevity or strong, functional conformation. They quite rightly ask why herds producing well over the national average of 370kgMS have low to very low BW.

"Most of our customers produce well over the national average and they focus on what works best for them which, nine times out of 10, is very good type (capacity, legs, feet, udders and moderate stature) transmittable components and fertility.

"BW is a measure of profitability but it's not the only measure. The measure that speaks most loudly to farmers is what they see in the paddock, in the vat and in their bank balance," Lina said.

The company's WWS mating service is a scientific programme which utilises advanced computer technology to improve each cow and take the guess work out of mating.

"The programme is the world's largest and most successful mating programme. We minimise inbreeding, boost fertility, have moderate size cows, and keep things simple," he said.

WWSNZ breeding consultant for North Canterbury Hannah Wentworth said the company imported semen from America to sell to dairy farmers in New Zealand. The majority of the bulls were kept in the US, she said, but the Tahora Holstein Friesian Stud at Tai Tapu, North Canterbury, provided semen to the company.

Wentworth said her job was to help farmers with their genetics.

"I consult with farmers on their breeding programmes and put together breeding guides. I help them to know what bull to use on what particular cow," she said.

"We are a global company. We market in 90 different countries. Last year WWS sold 19.3 million doses in 93 countries."

-Stuff

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Dairy genetics importer sees 42 per cent increase in sales - Stuff.co.nz

Kennewick Man’s Genetics Suggest More Than One Route To North … – KUOW News and Information

Genetic information from Kennewick Man shows the Bering Land Bridge may not have been the only route humans used to migrate to North America more than 10,000 years ago.

A new study published in the Proceedings of the National Academy of Sciences uses genetic data from four skeletons found along the coast of Northern British Columbia and Southeast Alaska. Scientists compared that information to Washingtons Kennewick Man and Montanas Anzick child.

Kennewick Mans only certain relatives come from Washington state and include members of todays Colville Indian Tribe as well as people who lived in Interior British Columbia, but not people who migrated across the Bering Land Bridge.

The Montana remains are linked to indigenous groups from Central and South America, thats one possible migration route, according to Professor Ripan Malhi of the University of Illinois Urbana-Champaign.

Or it could be that there was another movement from northeast Asia later on in time, Malhi said.

Scientists studied the nuclear genome from the ancient skeletons that range in age from 1,500 to 10,000 years old.

The nuclear genome is the vast majority of the DNA that you have in a cell and it provides you information about all of your ancestors, Malhi said.

Other studies previously made use of mitochondrial DNA, but that only shines light on an individuals maternal ancestry. Malhi said this new study provides a more complete picture of ancestry for native people along the Northwest coast of Alaska to Prince Rupert, British Columbia.

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Kennewick Man's Genetics Suggest More Than One Route To North ... - KUOW News and Information

‘Human knockouts’: Genetics in families reveals basic biology and … – News-Medical.net

April 12, 2017 at 8:24 PM

More than 1,800 individuals carrying loss-of-function mutations in both copies of their genes, so-called "human knockouts," are described in the first major study to be published in Nature this week by an international collaboration led by the Perelman School of Medicine at the University of Pennsylvania and colleagues. The program, which has so far sequenced the protein-coding regions of over 10,500 adults living in Pakistan, is illuminating the basic biology and possible therapeutics for several different disorders.

The team has identified more than 1,300 genes completely knocked out in at least one individual. They first turned their attention for deeper analysis to genes involved in cardiovascular and metabolic diseases. One gene in particular, APOC3, which regulates the metabolism of triglyceride-rich lipoproteins in the blood, was missing in several dozen individuals in a small fishing village on the coast of Pakistan where first-cousin marriages are culturally prevalent. These APOC3-knockout individuals had very low triglyceride levels. The researchers challenged their system with a high-fat meal. Compared with family members who were not APOC3 knockouts, the APOC3 knockout family members did not have the usual post-meal rise in plasma triglycerides.

"These are the world's first APOC3 human knockouts that have been identified," said co-first author and the principal investigator of the study, Danish Saleheen, MD, PhD, an assistant professor of Epidemiology and Biostatistics at Penn. "Their genetic makeup has provided unique insights about the biology of APOC3, which may further help in validating APOC3 inhibition as a therapeutic target for cardiometabolic diseases - the leading cause of death globally.

In addition to Penn, the team includes scientists from the Center for Non-Communicable Diseases (CNCD) in Karachi, Pakistan, the Broad Institute of MIT and Harvard, and the University of Cambridge, UK.

Saleheen has been working for over a decade in Pakistan, in collaboration with the CNCD to collect blood samples from all over his country. This Pakistan-based study already includes more than 70,000 participants and the recruitment is rapidly being expanded to include 200,000 people. "We are continuing protein-coding region sequencing studies in the Pakistani population. If we are able to sequence 200,000 participants, we will be able to identify human knockouts for more than 8,000 unique genes." Saleheen said. "These observations provide us with a roadmap, a systematic way to understand the physiological consequences of complete disruption of genes in humans," Saleheen said.

"The Human Genome Project gave us a 'parts' list of 18,000 genes. We are now trying to understand gene function by studying people who naturally lack a 'part,'" said co-senior author Sekar Kathiresan, Director of the Center for Genomic Medicine at Massachusetts General Hospital. "We think that over the next ten to twenty years, with a concerted, systematic effort, it's possible to find humans who naturally lack any one of several thousand genes in the genome and understand what the phenotypic consequences are."

"The project highlights the value of looking at diverse populations, particularly for genetic analyses--you'll find variants in one ethnicity and not another," said co-first author Pradeep Natarajan, an associate scientist at Broad Institute and a postdoctoral research fellow in Kathiresan's lab.

Co-senior author Daniel J. Rader, MD, chair of Genetics at Penn, hopes that future dives into this rich dataset will bring even more novel insights into human biology and point toward new therapeutic targets for treating and preventing disease. "Linking DNA sequencing with deep phenotyping at scale in this population will be an incredible source of new knowledge about how gene alterations influence human health and disease," Rader said. In addition to a continued focus on the biology of heart attacks, type 2 diabetes, and stroke, the team will also be looking for clues for early-onset Parkinson's disease, autism, congenital blindness, and mental retardation, among many other conditions.

Penn scientists are now collaborating with CNCD researchers to conduct deep phenotyping studies in all human knockouts the project identifies. These studies will include detailed physiological and mechanistic studies to understand the biological and pharmacological consequences of both partial and complete disruption of genes in humans.

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'Human knockouts': Genetics in families reveals basic biology and ... - News-Medical.net

Good genetics help make easy-care herd – Western Producer (subscription)

MARWAYNE, Alta. Art Wheat says it feels like Christmas when the bull catalogues start arriving at his farm in eastern Alberta.

I look for cattle that bend the curve, he said, referring to cattle with low birth weights and high weaning rates.

I want lots of weight in the fall because I get paid on pounds.

He, with his partner and kindergarten teacher Kathy Kent, combine forces to operate T-Bone Cattle Co., renting and owning eight quarters of land and calving 300 cows in their commercial herd.

They retain some heifer calves for breeding and steers, selling some of each in fall. As well, they favour low maintenance cows and avoid larger framed animals.

Art is very selective, Kathy said.

We dont want to touch anything if we dont have to.

An easy-care herd begins with good genetics.

This day, son-in-law Justin Hozack is preparing hair samples from his bulls for DNA testing. He and Arts daughter, Dr. Joan Wheat Hozack, have launched their own operation by buying land with Art and acquiring cattle.

Were trying to figure out traits on the bulls, good and bad. Then well know what well use on our calves, said Justin, who has worked on a sheep farm in New Zealand and a cattle farm near Calgary and has taken courses in artificial insemination.

Its early days in the Wheat farm succession plan, but the couple currently resides on an acreage closer to Marwayne and keeps their animals at the family farm.

Arts three daughters pursue careers off the farm. Kate is helping on the farm while doing an instrumentation apprenticeship, while Joan is an orthopedic surgeon in Lloydminster and Jill is a lawyer in Edmonton.

Kathy has two adult children who are not involved in the farm.

Over the years, family and friends have gathered to help with branding and cattle drives.

I like to move my cows slowly, said Art, who uses horses almost exclusively for cattle chores.

These days, Art trails cattle partway to distant pastures and trucks them the rest of the way because of increased traffic and lack of labour.

He shows off a double alley Bud Box handling area that allows for a good flow of cattle into the squeeze chutes and back out to the pens.

Art has his oats and corn custom seeded, harvested and silaged.

I dont have time, said Art, whose cattle graze standing corn in the fall and winter.

Kathy assists with farm chores, which can include checking cows, making ear tags, preparing medications and overseeing meals when large groups gather to help out on the farm or enjoy a barn dance and gymkhana.

The farms origins date back to Arts mothers uncle, who came here from Ireland in 1903. Without children of his own, he passed the farm on to Arts parents, Margaret and Frank, who operated a mixed farm here and raised six children.

When Art started farming, he chose the T-Bone Cattle name because its memorable.

When you hear it, you associate it with cattle and ranching, he said.

Keen to farm from an early age, he prepared by studying farm and ranch production at Olds College and briefly did artificial insemination work on hockey legend Bobby Hulls cattle farm near Winnipeg.

T-Bone maintains a website, http://www.tbonecattleco.com, selling cattle online and young steer calves to a small family feedlot. He previously exported semen from a commercial bull to Ireland.

The family is active in ranch rodeos and cow horse events such as reining, calf (chalk) branding, trailer loading of heifers and penning.

Art said its a way to hone their skills and promote the horses they raise, train and sell. They have 25 brood mares, colts and yearlings, of which eight are used in their operation.

Its all done with horses, we like to keep it that way, said Art, who grew up riding horses.

His daughters were also involved in 4-H light horse and cattle programs.

They knew more about horses than I did, said Art.

Kathy praised 4-H for instilling in participants a strong work ethic and sense of responsibility in caring for stock.

The last two years have been decent for cattle, said Art, who cited BSE, poor cattle prices and drought among the farms many past challenges.

He managed BSE simply by cutting spending.

It set you back, said Art, citing deteriorating vehicles, equipment and corrals as a result of such austerity. No new genetics were introduced, and animals were also kept longer than they should have.

Were still working our way out of it, he said.

Off-farm activities for Art have included sitting on Albertas Livestock Identification Services board, serving as president of a local community pasture and belonging to a grazing group.

Kathy said Art has much knowledge to impart to the next generation.

Its a time in Arts life when hes ready to pass that knowledge on, said Kathy.

That includes a good eye for cattle.

He knows how to read them, work them properly, she said.

The couple plan to be involved with the farm in some way for another five to 10 years, maybe with fewer cattle.

They took a warm weather holiday this winter and think more of that may be in their future.

We may holiday more because Justin is here and we are able to get away, said Kathy.

Its hard to leave this property. Old ranchers are all the same, said Art.

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Good genetics help make easy-care herd - Western Producer (subscription)

Central MA Science Festival on Saturday in Leominster – Sentinel … – Sentinel & Enterprise

LEOMINSTER -- How do bees make honey? What makes a robot move? How are storms created?

Get the answers to those questions and more at the fourth annual Central MA Science Festival on Saturday, April 15, from 10 a.m. to 3 p.m., at the Boys & Girls Club of Fitchburg and Leominster, 365 Lindell Ave.

The Central MA Science Festival is a free event featuring more than 25 interactive science and technology exhibits. This year's lineup of activities and events will inspire the scientist in all of us. Local scientists and educators will offer hands-on activities, including beekeeping, astronomy, robotics, oceanography, aviation, gold mining, holograms, laser obstacle course and embryology.

"This event is an opportunity for our club to share our passion for science, technology, Engineering, art and math (STEAM) with our community and encourage people of all ages and backgrounds to develop their curiosity for science and discovery," said Donata Martin, executive director of the Boys & Girls Clubs of Fitchburg, Leominster and Gardner. "This is a day where kids, adults and families discover new ideas and technology, learn the answer to questions about science and nature, and become inspired."

The Central MA Science Festival is the largest festival of its kind in North Central Massachusetts and is held in affiliation with the Cambridge Science Festival. The festival is sponsored by the Jacqueline Lavallee Trust, Market Basket, Omnova and DCU.

For more information, visit http://www.CentralMAScienceFestival.org.

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Central MA Science Festival on Saturday in Leominster - Sentinel ... - Sentinel & Enterprise

THREE THINGS TO DO | Leominster Champion – Leominster Champion

1: Fourth Annual Central MA Science Festival

How do bees make honey? What makes a robot move? How are storms created? Get the answers to these questions and more at the Fourth Annual Central MA Science Festival, to be held from 10 a.m. to 3 p.m. Saturday, April 15 at the Boys & Girls Club of Fitchburg and Leominster, located at 365 Lindell Ave. in Leominster. The Central MA Science Festival is a free event featuring more than 25 interactive science and technology exhibits. This years lineup of activities and events will inspire the scientist in all of us. Local scientists and educators will offer hands-on activities such as beekeeping, astronomy, robotics, oceanography aviation, gold mining, holograms, a Lazer Obstacle Course and embryology. The Central MA Science Festival is the largest Science Festival in North Central Massachusetts, and is held in affiliation with the Cambridge Science Festival. The festival is sponsored by the Jacqueline Lavallee Trust, Market Basket, Omnova and Digital Federal Credit Union. For more information about the festival, please visit http://www.CentralMAScienceFestival.org.

2: Easter Funday at City Hall

The City of Leominster is sponsoring an Easter Funday from 10 a.m. to 3 p.m. Friday, April 14 at Leominster City Hall. The event will include the Easter Bunny giving out eggs to the kids and taking photos, Debbie Richards doing story time, tables to decorate your own cookie, plant your own plant or make Fruit Loop necklaces, activities from Project Apples, bunnies and chicks from 4-H, a lamb from A Few of Ewe Farm, Lilyfaces with a backdrop taking free photos, and a new Peanuts cutout in which to take photos.

3: Dance2Swing with The Tom Nutile Big Band

Dance2Swing with The Tom Nutile Big Band will be held from 6:45-10:30 p.m. Sunday, April 16 at the Leominster-Fitchburg Lodge of Elks, 134 North Main St. (Route 12), Leominster. A Beginner Group Swing Dance Lesson will be offered at 6:45 p.m., followed by the show at 7:30 p.m. Admission for the band is $14. For more information, call (978) 728-4533 or visit http://www.dance2swing.com.

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THREE THINGS TO DO | Leominster Champion - Leominster Champion

A Whale of a Story (RJS) – Patheos (blog)

No this one isnt about Jonah. Rather it is about the fossil evidence and other evidence for the evolution of whales. Dennis Venema digs into this example in Adam and the Genome. Robert Asher has a chapter on whale evolution in his book Evolution of Belief. (Robert Asher is a paleontologist at Cambridge, specializing in the paleontology of mammals.) Gary Fugle also discusses whale evolution in his excellent book Laying Down Arms to Heal the Creation-Evolution Divide. As it happens some of my colleagues have been deeply involved in the study of whale evolution and we have several examples on display across the street.

Even Charles Darwin knew that whales were mammals. This led him to propose in his first edition of On the Origin of Species that they evolved from land animals perhaps from something like an aquatic bear. This proposal earned him a great deal of ridicule (Dennis quotes a rather acerbic example) and Darwin reduced his discussion of whale evolution in subsequent editions. While the identification of whales as mammals was once a poster child for anti-evolution forces, it has become one of the strongest examples of evolution available with a multitude of transitional fossils, most of them discovered in the last forty years. The whale also captures our imagination. Massive sea-faring mammals.

Darwin picked the wrong land animal, rather than a bear he should have chosen a pig, or a hippopotamus. Whales and porpoises (cetaceans) are even-toed ungulates like both of these mammals. The evidence for evolution of whales from an early even-toed ungulate comes in multiple threads.

(1) The fossil record. A string of intermediate forms have been identified (image above is a Basilosaurus fossil). Many of these fossils retain clear evidence of hind limbs gradually disappearing through the millions of generations. If you click on the image above you can see the hind limbs in the lower right corner. These are rudimentary, perhaps of use in reproduction, but certainly not for locomotion. The ankle bones of these ancient whale precursors have a structure similar to that of even-toed hoofed animals and one distinctive from other mammals.

The whale fin has the same external hydrodynamic structure as fish but the bone structure found in vertebrates, especially mammals with a humerus, ulna, radius, carpals. The whale fin if functionally similar to, but structurally distinct from the fin of a fish.

The fossil record shows a progression of whales with nostrils at various locations along the snout. Dennis notes that The nostrils in Protocetids, are not at the tip of the snout but are shifted back along the skull, and the hind-limb skeleton appears insufficient to bear the full weight of these mammals. Scientists believe these species behaved in a way analogous to modern sea lions: hunting and feeding in the oceans, but hauling themselves out to rest, mate, and bear young. (p. 17)

Robert Asher highlights a less commonly mentioned element of whale evolution; the divergence of toothed and baleen whales. The oldest whales were toothed like their land dwelling ancestors. The Basilosaurus above had some pretty impressive teeth. The baleen whales (filter feeders like the blue whale and the humpback) diverged from this line, likely beginning some forty million years ago or so. Paleontologists have identified a series of fossils exhibiting the development of the baleen and the loss of teeth as well as the gradual development of other features observed in baleen whales.

The features characteristic of todays baleen whales did not appear fully formed all at once. Many fossil species exhibit a mixture of features. Some early ancestors had both teeth and what appears to be the beginning of baleen. There is substantial evidence that whales with a combination of baleen and teeth existed for some ten million years alongside both toothed and baleen whales before going extinct.

The fossil record contains many transitional forms, with more no doubt remaining to be discovered. There isnt a complete linear path from tetrapod to whale, but given the nature of fossilization as a rare event, the number we do have is impressive.

(2) Embryology. The embryos of many whales develop hind limb buds that are reabsorbed, as well as external ear lobes, also reabsorbed. But there is more:

Modern cetaceans have two nostrils on the fronts of their face as embryos, like all mammals do. Over the course of development, the nostrils migrate from this starting location at the top of the head to form a blowhole, with the process complete before birth. And strikingly, modern cetaceans are true tetrapods for a short period as embryos. Cetacean embryos develop forelimbs and hind limbs at the same stage that all mammals do, but later the hind limbs stop developing and regress back into the body wall. Studies have shown that the basic biological machinery for making hind limbs is properly activated in young cetacean embryos, but that a second set of instructions later causes the process to stop and regress. (p. 17-18)

Robert Asher likewise discusses the significant embryological evidence. Concerning the development of baleen, he notes modern baleen whales begin the process of tooth formation prior to birth. Teeth in a minke whale never fully form or break the gums, but they do at least begin to develop and their rudiments can be seen in fetal specimens. (Asher p. 137) Figure 7.4 in his book illustrates the presence of rudimentary teeth in a fetus.

The modifications that result in different species often arise from changes in the signals an embryo receives in development and the timing of these signals. Here is one pathway for the accumulation of modest changes over time.

(3) Genetics. The genome project confirms the connections between whales and other mammals. Whale and dolphin DNA is most similar to the hippopotamus, then cow, sheep, deer and giraffes. All consistent with evolution from an even-toed hoofed precursor. Coming back to baleen, Robert Asher cites a study of three major genes important for the formation of enameled teeth.

DMP I (dentin matrix acidic phosphoprotein), AMBN (ameloblastin) and ENAM (enamelin). DMP I is known to contribute to the development of not only dentine but also other tissues such as bone and cartilage. The AMBN and ENAM proteins appear to express most strongly in the process of enamel formation in developing teeth. (Asher p. 137)

All three genes (DMP I, AMBN, ENAM) are present in baleen whales, but the two enamel-specific ones, AMBN and ENAM, have lost their enamel-producing function. Unlike the sequences in toothed whales (dolphin), even-toed ungulates (hippo, cow, pig, camel), and other mammals (human, mouse, rat, dog), their samples of these genes in modern baleen whales exhibited what are called frameshift mutations. That is, the basic sequences of AMBN and ENAM are present, but are missing critical elements that keep them from finishing what they do in other mammals, namely, synthesize proteins relevant to the formation of tooth enamel. Interestingly, such mutations were not present in the third protein [probably a typo should be gene], DMP I, which is demonstrably involved in processes besides tooth formation, such as bone and cartilage development. (Asher p. 138)

These genetic remnants are entirely consistent with evolution.

Certainly the leap from land animal like Indohyus or Pakicetid requires many concurrent and complementary changes. From feet to fins, nostrils to blow holes, and more. No such change could be made in one large step. The offspring would die. Each difference we see today required a number of modest intermediate changes. Every child resembled its parents. Grandparent, parent, child were all the same species. But over time the changes accumulate and new species appears. The whale is not the same species as its Pakicetid precursor just as Anglo Saxon is not the same as modern English. But as with the evolution of language, the evolution of species is imperceptible from the ground, the perspective of time is required.

If you wish to contact me directly, you may do so at rjs4mail[at]att.net

If interested you can subscribe to a full text feed of my posts at Musings on Science and Theology.

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A Whale of a Story (RJS) - Patheos (blog)

UC appeals US patent board decision on CRISPR-Cas9 – UC Berkeley

The University of California, the University of Vienna and Emmanuelle Charpentier (collectively UC) on Wednesday, April 12, filed an appeal to overturn a decision by the Patent Trial and Appeal Board (PTAB) that terminated the interference between a UC patent application for CRISPR-Cas9 gene-editing technology and the patent applications and issued patents of the Broad Institute, Harvard University and the Massachusetts Institute of Technology (collectively, the Broad).

An interference is a legal proceeding to determine who was the first to invent a given technology. Although UCs patent application and the Broads patents and patent application overlap in scope, the February 15 PTAB decision found that the claims in the interference are separately patentable. Accordingly, the PTAB decided to terminate the interference.

The appeal, filed in the U.S. Court of Appeals for the Federal Circuit in Washington, D.C., seeks to have the PTAB reinstate the interference.

Ultimately, we expect to establish definitively that the team led by Jennifer Doudna and Emmanuelle Charpentier was the first to engineer CRISPR-Cas9 for use in all types of environments, including in non-cellular settings and within plant, animal and even human cells, said Edward Penhoet, a special adviser on CRISPR to the UC president and UC Berkeley chancellor. Penhoet is the associate dean of biology at UC Berkeley and a professor emeritus of molecular and cell biology..

Doudna is a UC Berkeley professor of molecular and cell biology and of chemistry and a Howard Hughes Medical Institute investigator. Charpentier is now director of the Max Planck Institute for Infection Biology in Berlin.

Given the revolutionary nature of the CRISPR-Cas9 technology, UC believes that obtaining a timely confirmation that its scientific team was the first to invent the use of the technology in all environments, including eukaryotic cells, is important for current and potential users of the technology, including academia, industry and the public at large.

In parallel, UC intends to pursue continuing applications in the U.S. and globally to obtain patents claiming the CRISPR-Cas9 technology and its application in non-cellular and cellular settings, including eukaryotic cells. Corresponding patents have already been granted to UC in the United Kingdom, and the European Patent Office has announced that it will grant UCs patent on May 10, 2017.

UCs earliest patent application, which describes the CRISPR-Cas9 genome-editing technology and its use in any type of setting, was filed on May 25, 2012, while the Broads earliest patent application was filed more than six months later, on Dec. 12, 2012.

The law firm of Munger, Tolles & Olson LLP will be handling the appeal, with Don Verrilli, former solicitor general of the United States, as lead counsel.

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UC appeals US patent board decision on CRISPR-Cas9 - UC Berkeley

*13 Reasons Why* and *Grey’s Anatomy* Collide in This Bonkers Theory About Clay Jensen – Glamour

13 REASONS WHY

PHOTO: Beth Dubber/Netflix

13 Reasons Why has been on Netflix for only two weeks, but Reddit's already flooded with fan theories. (It's truthfully astounding fans can even write theories after experiencing the show's gut-wrenching finale. I could barely think after watching the thirteenth episode.) Today's favorite hypothesis connects the Netflix sensation with a show that's been on the air since the Stone Age: Grey's Anatomy. Fans already know the obvious connection between these shows: Kate Walsh (who plays Hannah's mom on 13 Reasons Why) had tenures on both Grey's Anatomy and Private Practice as Dr. Addison Montgomery. But they may not remember the other 13 Reasons Why actor who appeared on Grey's: Dylan Minnette, who plays Clay Jensen. He's the subject of our theory.

In a season four episode of Grey's Anatomy, Minnette plays a young kid named Ryan with hearing disabilities. Dr. Mark Sloan (Eric Dane) takes Ryan's case on and builds him a pair of ears that substantially improves his hearing. Now, 10 years later, Minnette stars as Clay Jensen on 13 Reasons Why, a character whose entire storyline is contingent on him listening intently to Hannah's 13 cassette tapes. The connection is obvious to some Twitter users: Because Dr. Sloan built Ryan/Clay a pair of ears back in the day, he can now hear Hannah's tapes and seek justice for her.

"Meredith Grey helped Clay Jensen get ears so he could listen to tapes left by Addison Montgomery's daughter," one Twitter user wrote.

"Good thing Mark Sloan gave this kid ears so he could listen to Hannah's tapes," wrote another.

Admittedly, this theory is a bit far-fetchedClay and Ryan are two different characters. The fact that hearing is crucial to both of their storylines is coincidental, but you have to love the Internet for making this connection. (It's almost as good as the one about Grey's taking place in the Marvel Universe.) Almost.

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*13 Reasons Why* and *Grey's Anatomy* Collide in This Bonkers Theory About Clay Jensen - Glamour